BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0493.0006.p (427 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3GW82.1 C3GW82_BACTU Putative uncharacterized protein 426 e-117 A7Z0X4.1 A7Z0X4_BACA2 YfiM 357 1e-96 Q97MM5.1 Q97MM5_CLOAB Predicted permease 267 1e-69 A7GKC4.1 A7GKC4_BACCN ABC-2 type transporter 117 3e-24 C3HCR1.1 C3HCR1_BACTU ABC-2 type transporter 108 1e-21 >C3GW82.1 C3GW82_BACTU Putative uncharacterized protein Length = 404 Score = 426 bits (1095), Expect = e-117, Method: Compositional matrix adjust. Identities = 213/367 (58%), Positives = 269/367 (73%), Gaps = 7/367 (1%) Query: 16 TKNKTFYXXXXXXXXXXXXXXGTVFSDSSSKIKTFNVAFYNADKGSSEGTXXXXXSLGNV 75 TKNK FY GTVFSDS SK++ F+VAFYNAD SLG+V Sbjct: 18 TKNKLFYLKLILFPSILILILGTVFSDSDSKVEAFDVAFYNADADDQ-------ISLGDV 70 Query: 76 LRDNVFKQEDLKQIVNLKETTSYKQGKQLLQDGKAAVFVYVPETFTKTAMNNEKTDIVLM 135 L+D FKQ++LK+I+NLK+ +Y +GK+L+++G+ A FVYVP+ FT+ MN+EKT+I L+ Sbjct: 71 LKDKAFKQDNLKEIINLKDVKNYDEGKRLIKEGEVAAFVYVPKGFTRAVMNDEKTNIDLI 130 Query: 136 GDNDKPLDKEIVATILDRFNASVRTMNVEQRTILQSISSTGNIPKDKIEKVMSQISGNKQ 195 G+ +K ++K IV T+LD F+ SV+TM+VEQ+ I++ + + N KDK+EKV++ + N Sbjct: 131 GNKNKKINKNIVETVLDSFSRSVKTMSVEQKEIVKQMHAANNTSKDKVEKVINHLLNNND 190 Query: 196 LSLKIPVVPTNKDAVPIDAMQYYSIAMVVMFSIMTAFVLVHSIVDEKQNHTLFRIKSTPT 255 +S++I TN + V ID+MQYYSIAMVVMFSIMTAFVLVH IVDE+QNHTLFRIKSTPT Sbjct: 191 ISVEIDKTATNNNTVSIDSMQYYSIAMVVMFSIMTAFVLVHGIVDERQNHTLFRIKSTPT 250 Query: 256 LNIQYVLGKLFGXXXXXXXXXXXXXXXXXXXFQMKWGNPLELLVITIVYAFAIGSIILLW 315 LNIQYVLGKL G FQM WGN ++ +IT VYAFAIGS+IL W Sbjct: 251 LNIQYVLGKLIGIIFAILMQMAAVIFISRIIFQMNWGNLFDIFIITTVYAFAIGSVILFW 310 Query: 316 GFTAKDHVTVSSLASPVLYIFSFLGGSFITKSGLPDSLRVIQEIIPNGKAINSYLKVCQG 375 GFTAKDHV+VSS+ASP+LYIFSFLGGSFI+K+ LPDSLRVIQEIIPNGKAIN YLKV QG Sbjct: 311 GFTAKDHVSVSSMASPILYIFSFLGGSFISKNSLPDSLRVIQEIIPNGKAINCYLKVKQG 370 Query: 376 VGLSGMY 382 +G +Y Sbjct: 371 LGFENIY 377 >A7Z0X4.1 A7Z0X4_BACA2 YfiM Length = 395 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 182/363 (50%), Positives = 239/363 (65%), Gaps = 15/363 (4%) Query: 19 KTFYXXXXXXXXXXXXXXGTVFSDSSSKIKTFNVAFYNADKGSSEGTXXXXXSLGNVLRD 78 K+FY GTVF SK+K F AFYNAD S SLG+VL++ Sbjct: 19 KSFYIKLILFPALMIFILGTVF-HGDSKVKPFQTAFYNADHAES--------SLGDVLKN 69 Query: 79 NVFKQEDLKQIVNLKETTSYKQGKQLLQDGKAAVFVYVPETFTKTAMNNEKTDIVLMGDN 138 +V KQ DL + +K+ SY++GKQL++ GK +VFVYVP+ F K A +NEKT I ++ D Sbjct: 70 DVLKQTDL---IRVKDIGSYQEGKQLVKSGKVSVFVYVPKGFAKAAEHNEKTSIKVISDQ 126 Query: 139 DKPLDKEIVATILDRFNASVRTMNVEQRTILQSISSTGNIPKDKIEKVMSQISGNKQLSL 198 ++ +IV + D F V+ E++ +L+ +G++ K K++S +SG ++ ++ Sbjct: 127 QGSVNGDIVEMMADSFVTRVKAEISEEKAVLKQ---SGHLSKGDASKIISGLSGEREQAV 183 Query: 199 KIPVVPTNKDAVPIDAMQYYSIAMVVMFSIMTAFVLVHSIVDEKQNHTLFRIKSTPTLNI 258 IP A PIDAMQYYSIAMVVMFSIMTAF L+H IV+E+Q HTLFRIKS P L I Sbjct: 184 TIPKQSAGNHAAPIDAMQYYSIAMVVMFSIMTAFALIHGIVEERQQHTLFRIKSMPVLRI 243 Query: 259 QYVLGKLFGXXXXXXXXXXXXXXXXXXXFQMKWGNPLELLVITIVYAFAIGSIILLWGFT 318 QYV GKL G +Q+KWGN E+L++TIVY+FAIGSI+LLWGFT Sbjct: 244 QYVAGKLLGIMLAILMQMAAVIIASSILYQVKWGNLFEILLVTIVYSFAIGSIVLLWGFT 303 Query: 319 AKDHVTVSSLASPVLYIFSFLGGSFITKSGLPDSLRVIQEIIPNGKAINSYLKVCQGVGL 378 AK+H TVSS+A+P+LY FSFLGGSFI K GLPDSL+++QE+IPNGKAINSY+ V Q GL Sbjct: 304 AKNHETVSSMAAPILYGFSFLGGSFIAKDGLPDSLKIVQELIPNGKAINSYVSVTQHAGL 363 Query: 379 SGM 381 SG+ Sbjct: 364 SGI 366 >Q97MM5.1 Q97MM5_CLOAB Predicted permease Length = 420 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 140/336 (41%), Positives = 204/336 (60%), Gaps = 6/336 (1%) Query: 47 IKTFNVAFYNADKGSSEGTXXXXXSLGNVLRDNVFKQEDLKQIVNLKETTSYKQGKQLLQ 106 +K FNVA+Y+AD G ++ L DNVF+ +D+K+I+NLK+ SY + K+L+ Sbjct: 47 LKVFNVAYYSADTGYQS------LNVSKNLSDNVFENKDIKKIINLKKVRSYAEAKELVS 100 Query: 107 DGKAAVFVYVPETFTKTAMNNEKTDIVLMGDNDKPLDKEIVATILDRFNASVRTMNVEQR 166 +G A+ VYVP FTK +N +I ++GDN+K D IV TI++ FN ++ T+ EQ Sbjct: 101 NGTASALVYVPTNFTKDYLNGNNVEISVVGDNNKINDVSIVKTIVNSFNENISTIRAEQN 160 Query: 167 TILQSISSTGNIPKDKIEKVMSQISGNKQLSLKIPVVPTNKDAVPIDAMQYYSIAMVVMF 226 + + + + + I+K++ I +S KI V + P++ MQY AMVVMF Sbjct: 161 EVEAEVKNKAFLKQVDIDKLIKSIENTNGISAKISKVASKSGVKPLNIMQYEIFAMVVMF 220 Query: 227 SIMTAFVLVHSIVDEKQNHTLFRIKSTPTLNIQYVLGKLFGXXXXXXXXXXXXXXXXXXX 286 SI+TAF L +IV +K N+T+ RIKST T N QY+L K+ G Sbjct: 221 SIITAFELTQNIVSDKLNNTMNRIKSTSTSNFQYILSKIIGMVIAIIVQMVTVMVISSVV 280 Query: 287 FQMKWGNPLELLVITIVYAFAIGSIILLWGFTAKDHVTVSSLASPVLYIFSFLGGSFITK 346 F++K+ N +++IT+VY FAIGSI++ G AKDH+ VSS+ SP+++ FSFLGGS K Sbjct: 281 FRVKYDNIPGIILITVVYGFAIGSIVVCAGLFAKDHMAVSSVMSPIVWGFSFLGGSLFDK 340 Query: 347 SGLPDSLRVIQEIIPNGKAINSYLKVCQGVGLSGMY 382 + PD L IQ IIPNGKAIN YL+VC+G + +Y Sbjct: 341 NNFPDVLACIQRIIPNGKAINCYLEVCEGNSIGFIY 376 >A7GKC4.1 A7GKC4_BACCN ABC-2 type transporter Length = 398 Score = 117 bits (292), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/318 (25%), Positives = 150/318 (47%), Gaps = 17/318 (5%) Query: 73 GNVLRDNVFKQEDLKQIVNLKETTSYKQGKQLLQDGKAAVFVYVPETFTKTAMNNEKTDI 132 G +LR ++ + +++++ + ++ TS + + LL+ K V V +P +++ + Sbjct: 64 GEMLRKDILQSKEIEKDIKVEMVTSQSELEDLLKKQKIDVGVIIPSGWSEQIEEGTLKEA 123 Query: 133 VLMGDNDKPLDKEIVATILDRFNASVRTMNVEQRTILQSISSTGNIPKDKIEKVMSQISG 192 LM + K + +I +++ F +T+ V + ++ ++ + PK+ IE++ ++S Sbjct: 124 KLMTNPAKGIQAKIAESVIRSFTEQAQTIAVSTQVVITELAKSQ--PKN-IEQIAKEVST 180 Query: 193 NKQLSLKIPVVPTNKDAVP--------IDAMQYYSIAMVVMFSIMTAFVLVHSIVDEKQN 244 N Q V +++D V + AMQYY+ AMVVMF + V SI+ E++ Sbjct: 181 NLQ-----TVATSDRDEVEKGTIGKKTVTAMQYYAAAMVVMFLLFNITVGAKSIITERRT 235 Query: 245 HTLFRIKSTPTLNIQYVLGKLFGXXXXXXXXXXXXXXXXXXXFQMKWG-NPLELLVITIV 303 TL R+ STPT + +LGK FG F + WG N +++ + Sbjct: 236 ETLARLFSTPTSSFSILLGKFFGTLLFSLIQFGVFVLATHYVFHVNWGENIFQMITVGTS 295 Query: 304 YAFAIGSIILLWGFTAKDHVTVSSLASPVLYIFSFLGGSFITKSGLPDSLRVIQEIIPNG 363 YA + + +L + T + + + + LGGS + PDSL+ I I PN Sbjct: 296 YAICVSGLSMLIAAWIHEEKTADLMGGIGVQLLALLGGSMLPLYAFPDSLQTIAHIAPNK 355 Query: 364 KAINSYLKVCQGVGLSGM 381 A+ S+L + G S + Sbjct: 356 WALTSFLNIMSGTSWSTL 373 >C3HCR1.1 C3HCR1_BACTU ABC-2 type transporter Length = 398 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 75/313 (23%), Positives = 147/313 (46%), Gaps = 17/313 (5%) Query: 72 LGNVLRDNVFKQEDLKQIVNLKETTSYKQGKQLLQDGKAAVFVYVPETFTKTAMNNEKTD 131 +V + +V + ++LK V +K S + + +L++ K V + +P +++ + + + Sbjct: 63 FADVFQKDVLQSKELKDDVKVKIVNSQGKLEDMLKEKKIDVGIVIPNKWSEQVQDGKLKE 122 Query: 132 IVLMGDNDKPLDKEIVATILDRFNASVRTMNVEQRTILQSISSTGNIPKDKIEKVMSQIS 191 ++ D K + +I +I+ F+ V+T+ V +++ ++ N + +E+V ++S Sbjct: 123 PKVLIDPSKDIQAKIAESIIQSFSERVQTVAVSTKSV---VTELANSQHNNVEEVAKEVS 179 Query: 192 GNKQLSLKIPVVPTNKDAVP--------IDAMQYYSIAMVVMFSIMTAFVLVHSIVDEKQ 243 G+ Q V + D + + AMQYY+ AM+VMF + V S+V E++ Sbjct: 180 GDLQ-----TVATSGTDNIEKGTIGKKTVVAMQYYAAAMLVMFLLYNITVGAKSVVAEQR 234 Query: 244 NHTLFRIKSTPTLNIQYVLGKLFGXXXXXXXXXXXXXXXXXXXFQMKWGNPL-ELLVITI 302 TL R+ STPT + + GK G F ++WG L +++ + I Sbjct: 235 TETLARLFSTPTSSFSILFGKFLGTLLFACIQFGMFIVATHFMFHVEWGGDLSQIIAVGI 294 Query: 303 VYAFAIGSIILLWGFTAKDHVTVSSLASPVLYIFSFLGGSFITKSGLPDSLRVIQEIIPN 362 YA + + +L + T + + I + LGGS + PD+L+ I + PN Sbjct: 295 SYAICVSGLSMLIAAFIHEEKTADVMGGIGIQILAILGGSMLPIYVFPDTLQTIANVAPN 354 Query: 363 GKAINSYLKVCQG 375 A+ S+L + G Sbjct: 355 KWALTSFLNIMSG 367 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.133 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,945,983,713 Number of extensions: 70350146 Number of successful extensions: 179365 Number of sequences better than 1.0e-05: 43 Number of HSP's gapped: 179477 Number of HSP's successfully gapped: 43 Length of query: 427 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 288 Effective length of database: 1,751,175,118 Effective search space: 504338433984 Effective search space used: 504338433984 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)