BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0493.0003.p (231 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3GW84.1 C3GW84_BACTU Thioesterase II-like protein 305 3e-81 C1FRI1.1 C1FRI1_CLOBJ Linear gramicidin dehydrogenase LgrE EC=1.... 275 2e-72 C3HSY1.1 C3HSY1_BACTU Thioesterase II-like protein 256 1e-66 C3FB41.1 C3FB41_BACTU Thioesterase II-like protein 256 1e-66 C3H9Z7.1 C3H9Z7_BACTU Thioesterase II-like protein 256 1e-66 >C3GW84.1 C3GW84_BACTU Thioesterase II-like protein Length = 231 Score = 305 bits (780), Expect = 3e-81, Method: Compositional matrix adjust. Identities = 139/231 (60%), Positives = 184/231 (79%), Gaps = 1/231 (0%) Query: 1 MKFLFCLPYAGGSGSIYYKWSTLLSDTIQLCPIELKGRGKRIHEVFYEDIDEAVNDIYVQ 60 MK LFCLPYAGGS SIYYKW+ + D+++L PIELKGRG RI+E FYEDI+EAV+DIY Sbjct: 1 MKTLFCLPYAGGSSSIYYKWNKYIGDSLELYPIELKGRGARINEAFYEDINEAVDDIYDL 60 Query: 61 LKDKIDQHEYAIFGHSMGSRLAYKLYYKIDKMNNRKPKHIFFSGCGAPNIPRRKSMLHSL 120 +KDKI + EYA+FGHSMG RLAYKLY+KI++M N+KPKHIFFS CG P+I ++ M+H+L Sbjct: 61 IKDKISEGEYALFGHSMGGRLAYKLYHKIEQMKNKKPKHIFFSACGVPSIKKKTGMIHTL 120 Query: 121 PDPLFIQRIMEMGGTPEEFVTNKDLQKLCLPILRNDFRILEKDRYTEHEQKLGCDISILS 180 PD +F++ IM +GGT EE + NKDL+ L +PI+RNDFRILEKD+ + K+ CDI++LS Sbjct: 121 PDDVFLKEIMRLGGTSEELLYNKDLRDLYIPIIRNDFRILEKDKEVKKSNKIDCDITVLS 180 Query: 181 GNKD-TLSAEAIVSWKNYTDRQCKLYMFEGNHFYINHHADDITAIINQTLN 230 G++D T+S EA W NYT+ +CK+ F+G+HF+INHH +IT II + L+ Sbjct: 181 GDEDNTISTEATRLWANYTNGECKIIRFKGDHFFINHHGLEITEIIKKMLH 231 >C1FRI1.1 C1FRI1_CLOBJ Linear gramicidin dehydrogenase LgrE EC=1.1.-.- Length = 238 Score = 275 bits (704), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 129/228 (56%), Positives = 174/228 (76%) Query: 4 LFCLPYAGGSGSIYYKWSTLLSDTIQLCPIELKGRGKRIHEVFYEDIDEAVNDIYVQLKD 63 LFCLPYAGGS +IYYKW L+ +I+L PIELKGRGKR +E+FYE IDEAV DI +KD Sbjct: 3 LFCLPYAGGSEAIYYKWKKYLNPSIELSPIELKGRGKRYNEIFYETIDEAVEDILKNIKD 62 Query: 64 KIDQHEYAIFGHSMGSRLAYKLYYKIDKMNNRKPKHIFFSGCGAPNIPRRKSMLHSLPDP 123 +I ++YAI+GHSMGS LAY+LYYKI K RKP HIFFSG APNI R+K +++LPD Sbjct: 63 RIIDNDYAIYGHSMGSLLAYELYYKIKKQKLRKPIHIFFSGYKAPNIIRKKENIYTLPDY 122 Query: 124 LFIQRIMEMGGTPEEFVTNKDLQKLCLPILRNDFRILEKDRYTEHEQKLGCDISILSGNK 183 FI++++E+GGTPEE NK+L + +PI+RNDF+ILE Y + E K+ CD+SIL+G + Sbjct: 123 DFIKKVIELGGTPEELSNNKELLDIFIPIIRNDFKILENYNYEKKEDKIECDVSILNGKQ 182 Query: 184 DTLSAEAIVSWKNYTDRQCKLYMFEGNHFYINHHADDITAIINQTLNE 231 D+++ E I++WK + + K+Y FEG+HF+IN++ +I +IIN TL E Sbjct: 183 DSINLEEILAWKKHVGKGFKVYSFEGDHFFINNNVKNINSIINSTLIE 230 >C3HSY1.1 C3HSY1_BACTU Thioesterase II-like protein Length = 240 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 118/229 (51%), Positives = 167/229 (72%) Query: 3 FLFCLPYAGGSGSIYYKWSTLLSDTIQLCPIELKGRGKRIHEVFYEDIDEAVNDIYVQLK 62 LFCLPYAGGS ++YYKWS LS +I+LCP+ LKGRGKR +E FY ++EAV+DI+ ++ Sbjct: 2 LLFCLPYAGGSEALYYKWSDYLSPSIKLCPVLLKGRGKRFNEPFYNSLEEAVDDIFNNIQ 61 Query: 63 DKIDQHEYAIFGHSMGSRLAYKLYYKIDKMNNRKPKHIFFSGCGAPNIPRRKSMLHSLPD 122 KI + +YAI+GHSMGS LAY+LYYKI M +KPKHIFFSG AP+ +K + ++LP Sbjct: 62 GKIGEEDYAIYGHSMGSLLAYELYYKIIGMGLKKPKHIFFSGYKAPSEREKKEITYNLPK 121 Query: 123 PLFIQRIMEMGGTPEEFVTNKDLQKLCLPILRNDFRILEKDRYTEHEQKLGCDISILSGN 182 F R++E+GGTPEE + N++L + +P+L++DF+I+E Y E K+ CDI++L+G Sbjct: 122 NEFKNRVIELGGTPEELIRNEELFEFFIPLLKHDFKIVETYEYKEKADKITCDITVLNGT 181 Query: 183 KDTLSAEAIVSWKNYTDRQCKLYMFEGNHFYINHHADDITAIINQTLNE 231 +D +S + I+ WK +T K+Y EGNHF+IN++ + IT IIN TL E Sbjct: 182 EDLISLKGIIGWKKHTCGNFKIYNLEGNHFFINNNVEKITTIINDTLTE 230 >C3FB41.1 C3FB41_BACTU Thioesterase II-like protein Length = 240 Score = 256 bits (654), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 118/229 (51%), Positives = 167/229 (72%) Query: 3 FLFCLPYAGGSGSIYYKWSTLLSDTIQLCPIELKGRGKRIHEVFYEDIDEAVNDIYVQLK 62 LFCLPYAGGS ++YYKWS LS +I+LCP+ LKGRGKR +E FY ++EAV+DI+ ++ Sbjct: 2 LLFCLPYAGGSEALYYKWSDYLSPSIKLCPVLLKGRGKRFNEPFYNSLEEAVDDIFNNIQ 61 Query: 63 DKIDQHEYAIFGHSMGSRLAYKLYYKIDKMNNRKPKHIFFSGCGAPNIPRRKSMLHSLPD 122 KI + +YAI+GHSMGS LAY+LYYKI M +KPKHIFFSG AP+ +K + ++LP Sbjct: 62 GKIGEEDYAIYGHSMGSLLAYELYYKIIGMGLKKPKHIFFSGYKAPSEREKKEITYNLPK 121 Query: 123 PLFIQRIMEMGGTPEEFVTNKDLQKLCLPILRNDFRILEKDRYTEHEQKLGCDISILSGN 182 F R++E+GGTPEE + N++L + +P+L++DF+I+E Y E K+ CDI++L+G Sbjct: 122 NEFKNRVIELGGTPEELIRNEELFEFFIPLLKHDFKIVETYEYKEKADKITCDITVLNGT 181 Query: 183 KDTLSAEAIVSWKNYTDRQCKLYMFEGNHFYINHHADDITAIINQTLNE 231 +D +S + I+ WK +T K+Y EGNHF+IN++ + IT IIN TL E Sbjct: 182 EDLISLKGIIGWKKHTCGNFKIYNLEGNHFFINNNVEKITTIINDTLTE 230 >C3H9Z7.1 C3H9Z7_BACTU Thioesterase II-like protein Length = 232 Score = 256 bits (653), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 117/228 (51%), Positives = 167/228 (73%) Query: 4 LFCLPYAGGSGSIYYKWSTLLSDTIQLCPIELKGRGKRIHEVFYEDIDEAVNDIYVQLKD 63 LFCLPYAGGS ++YYKW L+ +I LCP+ LKGRGKR +E FY ++EAV+DI+ ++D Sbjct: 2 LFCLPYAGGSEALYYKWGDYLTPSINLCPVLLKGRGKRFNEPFYNSLEEAVDDIFDNIRD 61 Query: 64 KIDQHEYAIFGHSMGSRLAYKLYYKIDKMNNRKPKHIFFSGCGAPNIPRRKSMLHSLPDP 123 KI + +YAI+GHSMGS LAY+LYYKI M +KPKHIFFSG AP+ +K + ++LP+ Sbjct: 62 KIGEEDYAIYGHSMGSLLAYELYYKIIGMGFKKPKHIFFSGYKAPSEREKKEITYNLPNN 121 Query: 124 LFIQRIMEMGGTPEEFVTNKDLQKLCLPILRNDFRILEKDRYTEHEQKLGCDISILSGNK 183 F R++E+GGTPEE + N++L + +P+L++DF+I+E Y E K+ CDI++L+G + Sbjct: 122 EFKNRVIELGGTPEELIRNEELFEFFIPLLKHDFKIVETYEYKEKADKITCDITVLNGTE 181 Query: 184 DTLSAEAIVSWKNYTDRQCKLYMFEGNHFYINHHADDITAIINQTLNE 231 D +S + I+ WK +T K+Y EGNHF+IN++ + IT IIN TL E Sbjct: 182 DLISLKGIIGWKKHTCGNFKIYNLEGNHFFINNNVEKITTIINDTLTE 229 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.140 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,484,475,568 Number of extensions: 63184062 Number of successful extensions: 146206 Number of sequences better than 1.0e-05: 784 Number of HSP's gapped: 144502 Number of HSP's successfully gapped: 785 Length of query: 231 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 100 Effective length of database: 1,826,543,238 Effective search space: 182654323800 Effective search space used: 182654323800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)