BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0492.0007.p (271 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9KFY6.1 Q9KFY6_BACHD BH0332 protein 229 2e-58 C1TQC0.1 C1TQC0_9BACT CRISPR-associated RAMP protein, Cmr6 family 150 2e-34 B7A6X1.1 B7A6X1_THEAQ CRISPR-associated RAMP protein, Cmr6 family 145 3e-33 C5BIW3.1 C5BIW3_9GAMM CRISPR-associated RAMP protein, Cmr6 family 142 5e-32 Q53W04.1 Q53W04_THET8 Putative uncharacterized protein TTHB165 135 3e-30 >Q9KFY6.1 Q9KFY6_BACHD BH0332 protein Length = 248 Score = 229 bits (585), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 126/263 (47%), Positives = 161/263 (61%), Gaps = 18/263 (6%) Query: 1 LNAYLAITKQEASNKGSKLYRVVNGDLQNTKGEFYRQLIKEYQADW-KQSCIWYEQRYEH 59 +NAYL +TK + S K S L + + D + K F+ Q I ++ W ++ WY+QRY Sbjct: 1 MNAYLTLTKYKGSQKKSDLLKQI--DNPDGKSAFFEQAILDFGNYWGTKNVSWYKQRYAA 58 Query: 60 YSTKLHDTLGDSRCIEFEMASISPLLIGHGGVSALETSLMLHRIYGVPYIPGSAIKGVTA 119 Y + + F + S PL+IG G S LET L LH IYG+PY+PGS IKGVTA Sbjct: 59 YEGHIKSS--SDTNTSFFLKSSFPLIIGQGNPSILETHLTLHPIYGIPYLPGSLIKGVTA 116 Query: 120 NYCHCMLGAENPAFLSDGEYYEALFGSQDQAGYINYEDAWVTPATAESALIDDVMTPHHQ 179 +YCH +LG E+ F EY LFGSQ+QAG I+Y DA TP + ++ L DV+TPHHQ Sbjct: 117 HYCHQVLGKEDSKFKQGEEYALVLFGSQEQAGAIHYHDALPTPKSIKNCLSLDVITPHHQ 176 Query: 180 NYNSIQLQRTDQQKASAPRDDDDPVPLPFLAVNASFRFLLTCPSDRVEKEDARQWLNIAQ 239 +YN Q APRDDD PVP+PFL V A FR +L+C E +WLNIAQ Sbjct: 177 SYN--------QGLNQAPRDDDSPVPVPFLTVKADFRVILSC-----EDLAYAEWLNIAQ 223 Query: 240 EIVSHALQYEGIGGKTNAGYGRM 262 +IVSHA+ GIGGKTNAGYG+M Sbjct: 224 KIVSHAVTEMGIGGKTNAGYGKM 246 >C1TQC0.1 C1TQC0_9BACT CRISPR-associated RAMP protein, Cmr6 family Length = 357 Score = 150 bits (378), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/181 (41%), Positives = 110/181 (60%), Gaps = 16/181 (8%) Query: 84 LLIGHGGVSALETSLMLHRIYGVPYIPGSAIKGVTANYCHCMLGAENPAFLSDGEYYEAL 143 L+ G GG S ET L LH YG P IPGS+IKGV A+YCH + G + +F GE + + Sbjct: 87 LVCGLGGASPTETGLTLHHTYGTPVIPGSSIKGVAAHYCHKIWGEADDSFKEGGEAHSVI 146 Query: 144 FGSQDQAGYINYEDAWVTPATAESALIDDVMTPHHQNYNSIQLQRTDQQKASAPRDDDDP 203 FG+ + G+I + DA + P + + D+MTPHHQ+Y + SAP D D P Sbjct: 147 FGTTEDQGHIIFHDALIEPLGRK--VCRDIMTPHHQDYYG-------DKGGSAPTDFDSP 197 Query: 204 VPLPFLAVNASFRFLLTC--PSDRVEKEDARQWLNIAQEIVSHALQYEGIGGKTNAGYGR 261 VP+ FL+V+ SF+ ++ C PS E+ ++WL +A E+V AL G+GGKT++GYG+ Sbjct: 198 VPVSFLSVSGSFQVVIECDDPS-----EEGQEWLRLATELVKEALDKWGVGGKTSSGYGK 252 Query: 262 M 262 + Sbjct: 253 L 253 >B7A6X1.1 B7A6X1_THEAQ CRISPR-associated RAMP protein, Cmr6 family Length = 354 Score = 145 bits (367), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 81/194 (41%), Positives = 112/194 (57%), Gaps = 15/194 (7%) Query: 77 EMASISPLLIGHGGVSALETSLMLHRIYGVPYIPGSAIKGVTANYCHCMLGAE----NPA 132 E ++S L++G GG LETSL LHR YGVPYIPGSA+KG+ + Y H L E + A Sbjct: 82 EAETLSRLVVGLGGEGVLETSLTLHRTYGVPYIPGSALKGLASRYAHLYLEGEAWRRDLA 141 Query: 133 FLSDGEYYEALFGSQDQAGYINYEDAWVTPATAESALIDDVMTPHHQNYNSIQLQRTDQQ 192 GE ALFG+ ++ G + + DA P E L D++ PHH Y + Sbjct: 142 NFQRGEAQAALFGTTEEQGLVVFFDALPLPGKWE--LHPDILNPHHPAYY--------RG 191 Query: 193 KASAPRDDDDPVPLPFLAVNASFRFLLTCPSDRVEKEDARQWLNIAQEIVSHALQYEGIG 252 + P D D P P+PFL+V +F L P+ V++E AR WL A +I++ AL+ EG+G Sbjct: 192 EGEPPADWDSPTPVPFLSVTGTF-LLALAPAPGVDREAARPWLRAAWQILAWALREEGVG 250 Query: 253 GKTNAGYGRMLQAD 266 KT++GYGRM A+ Sbjct: 251 AKTSSGYGRMALAE 264 >C5BIW3.1 C5BIW3_9GAMM CRISPR-associated RAMP protein, Cmr6 family Length = 360 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 72/198 (36%), Positives = 115/198 (58%), Gaps = 16/198 (8%) Query: 70 DSRCIEFEMASISPLLIGHGGVSALETSLMLHRIYGVPYIPGSAIKGVTANYCHCMLGAE 129 ++ C++ ++ +IS ++IG G S LET L LH YGVP IPG+A+KG+ A++ + + Sbjct: 82 ENSCVD-DVETISRMIIGLGSDSVLETGLSLHHTYGVPIIPGTALKGLAAHFAASVWKND 140 Query: 130 NPAFLSDGEYYEALFGSQDQAGYINYEDAWVTPATAE---SALIDDVMTPHHQNYNSIQL 186 P + GEY+ +FGS AG + + D W+ P E L+DD++TPHH +Y + Sbjct: 141 EPEWDIGGEYHTIVFGSSASAGNLVFHDGWIQPQCVEQEHKGLLDDILTPHHSDYYT--- 197 Query: 187 QRTDQQKASAPRDDDDPVPL-PFLAVNASFRFLLTCPSDRVEKEDARQWLNIAQEIVSHA 245 +AP D DDP P FL+V +FR ++C E+ R W + +++ A Sbjct: 198 -----SGNAAPTDFDDPNPANSFLSVAGTFRIAISCEDT---SENGRAWCKLTMQLLRSA 249 Query: 246 LQYEGIGGKTNAGYGRML 263 L+ G+GGKT++GYGR++ Sbjct: 250 LEQWGVGGKTSSGYGRLI 267 >Q53W04.1 Q53W04_THET8 Putative uncharacterized protein TTHB165 Length = 348 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 76/191 (39%), Positives = 108/191 (56%), Gaps = 17/191 (8%) Query: 77 EMASISPLLIGHGGVSALETSLMLHRIYGVPYIPGSAIKGVTANYCHCMLGAE----NPA 132 E ++S L++G GG LET+L LHR YGVPYIPGSA+KG+ + Y H L E + A Sbjct: 75 EARTLSRLVVGLGGEGVLETALTLHRAYGVPYIPGSALKGLASRYAHLYLEGEAWRRDLA 134 Query: 133 FLSDGEYYEALFGSQDQAGYINYEDAWVTPATAESALIDDVMTPHHQN-YNSIQLQRTDQ 191 GE LFG+ ++ G + + DA P + L D++ PHH + Y S++ Sbjct: 135 RFHRGEAQAGLFGTTEEQGLVVFWDA--LPLPGKWKLHPDILNPHHPDYYGSVK------ 186 Query: 192 QKASAPRDDDDPVPLPFLAVNASFRFLLTCPSDRVEKEDARQWLNIAQEIVSHALQYEGI 251 + P D D P P+PFL+ +F L P+ V E+A WL A I++ AL+ EG+ Sbjct: 187 ---APPADWDGPKPVPFLSATGTF-LLALSPAPGVSPEEAGPWLRAAWRILAWALREEGV 242 Query: 252 GGKTNAGYGRM 262 G KT++GYGRM Sbjct: 243 GAKTSSGYGRM 253 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,664,826,581 Number of extensions: 68393833 Number of successful extensions: 153301 Number of sequences better than 1.0e-05: 59 Number of HSP's gapped: 153194 Number of HSP's successfully gapped: 60 Length of query: 271 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 138 Effective length of database: 1,807,701,208 Effective search space: 249462766704 Effective search space used: 249462766704 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)