BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0492.0006.p
         (124 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q9RC62.1 Q9RC62_BACHD Putative uncharacterized protein                104   3e-21
B1I5K6.1 B1I5K6_DESAP CRISPR-associated protein, Cmr5 family           57   4e-07
A2V338.1 A2V338_SHEPU CRISPR-associated protein, Cmr5 family           57   6e-07
A9AVY5.1 A9AVY5_HERA2 CRISPR-associated protein, Cmr5 family           57   6e-07
C1XVM6.1 C1XVM6_9DEIN CRISPR-associated protein, Cmr5 family           56   9e-07

>Q9RC62.1 Q9RC62_BACHD Putative uncharacterized protein
          Length = 125

 Score =  104 bits (259), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 75/119 (63%), Gaps = 11/119 (9%)

Query: 1   MKSAAHTYAEKAMQSIRSVEADPDCNNKDYGRLCLLFPSMVQVNGLRLTVAFFQSKGKSQ 60
           MKS    YA  A+QSI+ +E   +     +G LC  FPSMV++NGLRLTVAF++S  K +
Sbjct: 1   MKSLDAHYANIALQSIQELEKSDEAFKTSFGSLCHQFPSMVRLNGLRLTVAFYES--KKE 58

Query: 61  KTLHQRYLQDLAAAVGSAAWETGLSTNDM----MDYRDLTRHVLQAAVWFKRYAEAILK 115
            T H RYL  L AA+G       +S ND+     +YR +T   L+A++WFKRYAEAILK
Sbjct: 59  NTAHARYLAGLKAALG-----VSISANDIPERGAEYRRMTEQALRASIWFKRYAEAILK 112


>B1I5K6.1 B1I5K6_DESAP CRISPR-associated protein, Cmr5 family
          Length = 125

 Score = 57.4 bits (137), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 64/122 (52%), Gaps = 8/122 (6%)

Query: 1   MKSAAHTYAEKAMQSIRSV--EADPDCNNKDYGRLCLLFPSMVQVNGLRLTVAFFQSK-G 57
           M++    YA K  + +  V  E   D +N +YG L    P  V+  GL   +AF +++ G
Sbjct: 1   MQTRNQEYAAKIFEQVMQVRDELGKDGSN-NYGSLAHRLPVFVRTAGLAQALAFVEARDG 59

Query: 58  KSQKTLHQRYLQDLAAAVGSAAWETGLSTNDMMDYRDLTRHVLQAAVWFKRYAEAILKVE 117
            + + L    L+D+AA V          T ++ +Y  LTR+VL A  W+KR+A+++L VE
Sbjct: 60  AAGRKL----LRDIAAVVNEEELLARSRTAELPEYMLLTRNVLAALAWYKRFAQSVLGVE 115

Query: 118 AA 119
           A 
Sbjct: 116 AG 117


>A2V338.1 A2V338_SHEPU CRISPR-associated protein, Cmr5 family
          Length = 142

 Score = 57.0 bits (136), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 60/130 (46%), Gaps = 15/130 (11%)

Query: 1   MKSAAHTYAEKAMQSIRSVE-ADPDCNNKDYGRLCLLFPSMVQVNGLRLTVAFFQSKGKS 59
           M+  +   A  A Q I++ +  + D +NK+Y  L    PSM+  NGL  T  FF +K + 
Sbjct: 1   MQPRSQIVATAAYQRIKARKLENSDKDNKNYATLVHKLPSMILQNGLAQTTGFFLAKNED 60

Query: 60  QKTLHQRYLQD-----------LAAAVGSAAWETGLSTNDMMDYRDLTRHVLQAAVWFKR 108
               HQ  L+D           LA      A    +  +D+     +TR  L+ A W +R
Sbjct: 61  H---HQALLEDLTQVFKQVDAKLANIANGEALHGEIIQSDLHQIMRMTREALEIAGWLRR 117

Query: 109 YAEAILKVEA 118
           Y + +LK++A
Sbjct: 118 YVQGVLKIDA 127


>A9AVY5.1 A9AVY5_HERA2 CRISPR-associated protein, Cmr5 family
          Length = 136

 Score = 57.0 bits (136), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 6/98 (6%)

Query: 30  YGRLCLLFPSMVQVNGLRLTVAFFQSKGKSQKTLHQRYLQDLAAAVGSAAWETGLS---T 86
           YG L    P M++  GL   + F  ++ K+++   +++L+DLA  +G    +  L    T
Sbjct: 35  YGNLAFTLPIMIRSAGLVQALHFASTRKKAEQ---KQFLEDLADVLGYQNTQELLDQSRT 91

Query: 87  NDMMDYRDLTRHVLQAAVWFKRYAEAILKVEAADGLDS 124
             + +Y  LTR  L   VWFKR+A++IL +EA++  +S
Sbjct: 92  AQITEYMRLTRQTLAVLVWFKRFAQSILDLEASEATES 129


>C1XVM6.1 C1XVM6_9DEIN CRISPR-associated protein, Cmr5 family
          Length = 129

 Score = 56.2 bits (134), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 8/117 (6%)

Query: 10  EKAMQSIRSVE-ADPDCNNKDYGRLCLLFPSMVQVNGLRLTVAFFQSK----GKSQKTLH 64
           ++A++ + S+E ADP+   + YG LC  FP MV  +GL   VAF   K    GK  +  H
Sbjct: 11  QRALELVSSLERADPEVK-RIYGGLCHSFPVMVLQSGLCQAVAFSADKASGDGKRAQA-H 68

Query: 65  QRYLQDLAAAVG-SAAWETGLSTNDMMDYRDLTRHVLQAAVWFKRYAEAILKVEAAD 120
           Q  L+ L   +G        L +     Y   TR VL+A V+FKR+A ++L+V+A +
Sbjct: 69  QHLLEHLGEMLGVRGKLLEALQSAPTPVYMHHTRRVLEAWVYFKRFAVSVLQVQAGE 125


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.129    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 667,843,485
Number of extensions: 21129067
Number of successful extensions: 45633
Number of sequences better than 1.0e-05: 12
Number of HSP's gapped: 45634
Number of HSP's successfully gapped: 12
Length of query: 124
Length of database: 3,060,696,203
Length adjustment: 90
Effective length of query: 34
Effective length of database: 2,212,804,853
Effective search space: 75235365002
Effective search space used: 75235365002
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)