BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0492.0002.p (495 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9KFY9.1 Q9KFY9_BACHD BH0327 protein 274 2e-71 C5BIW8.1 C5BIW8_9GAMM CRISPR-associated RAMP protein, Cmr1 family 208 1e-51 C1TQB5.1 C1TQB5_9BACT CRISPR-associated protein, Cmr1 family 171 2e-40 B1I5K8.1 B1I5K8_DESAP CRISPR-associated RAMP protein, Cmr1 family 155 1e-35 A5D0Z2.1 A5D0Z2_PELTS Uncharacterized protein 140 2e-31 >Q9KFY9.1 Q9KFY9_BACHD BH0327 protein Length = 458 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 179/479 (37%), Positives = 264/479 (55%), Gaps = 65/479 (13%) Query: 14 LDLVIKDIQESRKKVPEDRFNITIVTPMFGGGSKPGFTDSAFPIRSASIRGHLRFWWRAT 73 L+ + ++E K E NI+I+T MFGGG+K G D P+RS SIRG+LRFWWRAT Sbjct: 15 LEETLNTLKERADKTKES-LNISIITHMFGGGTKAGQVDKEIPVRSTSIRGNLRFWWRAT 73 Query: 74 RGAAFESVTELRQREVEIFGDSHSPSRVKISVHIFNKTEPEKGKEHSASI----NNETPK 129 RGA + +V L++ E +IFGD++ PS VKISV E G A I NN Sbjct: 74 RGAMYPNVKSLKEAEAKIFGDTNRPSAVKISV-------SETGDAKWAPILERKNNRRLH 126 Query: 130 RTVRLPRYAVFPF-----DKNNPGSNMQQFELTIRYTPRLPKQADTLENGSKPFLNVEQL 184 ++ +Y +FPF DK+ ++ + +T L ++N +N+ Sbjct: 127 SSLSKYKYVLFPFEDRKRDKHQDHTDYLNTDSPYTFTLHLEYIQFEVDN-----INI--- 178 Query: 185 RKEITPALWAWINFGGLGSRTRRGCGSLYCKDFAPERTSTHPK-YEDWFHGKVADYELEL 243 R E+ ALWAWINFGGLG+RTRRGCGSLYCK F+P + + P+ + WF +V Y++++ Sbjct: 179 RDEVHAALWAWINFGGLGARTRRGCGSLYCKSFSPPKDTQTPEALKQWFADRVKKYKIKV 238 Query: 244 DTQLEKKEWPTLSRSVIIQEYERDMIS---AWNDVIKLYHNFRSQPNNTYIYSKPPKYER 300 D+ +KEWPTL + + I+ ++S AW V+ Y FR N K R Sbjct: 239 DST-SRKEWPTL-QQIFIKSSNSKLLSPLQAWQFVVFHYSQFRGLSNG--------KRGR 288 Query: 301 SLWPEADSLRRGTGMSXXXXMSEEDHKKPSPFKKQEF-FSFPRAQLGLPIIFQFKQDEYL 359 S WPE DS+R T M+EEDHK +K++ +FPRAQ GLP+IFQF + Sbjct: 289 SHWPEPDSIRHMT------RMAEEDHKTSVTIEKEDANIAFPRAQFGLPVIFQFHSKDR- 341 Query: 360 KKRYSNFREPYNMQLAPKDKSRLASPLITKALARSDKRGVGIIVKLNQPRLSELELKVIE 419 ++P+ L P+ K RLAS LI KA+ S++ I+V LNQP + E+EL +++ Sbjct: 342 -------QDPFPTILKPRGKDRLASRLIIKAVGVSERSAFPIVVTLNQPEIEEVELSLMK 394 Query: 420 NKEDKRKRSPRDFAHIESIEELVAHKPIREKDIY--KELSYPGSPMKQGQKSAIQAFLE 476 + + ++ E E+L +K ++D+ K L+Y PMK+ SA++AF++ Sbjct: 395 EVKTEEQK--------EVKEQLDKYKGKLKRDVVYPKNLNYQKYPMKEST-SAVEAFIK 444 >C5BIW8.1 C5BIW8_9GAMM CRISPR-associated RAMP protein, Cmr1 family Length = 473 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 165/491 (33%), Positives = 233/491 (47%), Gaps = 105/491 (21%) Query: 29 PEDRFNITIVTPMFGGGSKPGFTDSAFPIRSASIRGHLRFWWRATRGAAFESVTELRQRE 88 P+ R+NI +VTPMFGGG + D + IR SIRGHLRFWWRATRGA F+++ LR+RE Sbjct: 26 PQWRYNIQVVTPMFGGGVEARVLDPSQLIRGTSIRGHLRFWWRATRGAKFDNLASLRERE 85 Query: 89 VEIFGDSHSPSRVKISVHIFNKTEPEKGKEHSASINNETPKRT----------VRLPRYA 138 I+GD+ +PSRV++ V + N EP+ ++ I N+ +RT RY Sbjct: 86 AAIWGDTDTPSRVQLQVRLLNSDEPKPVLKY---IKNQKGRRTPDWAEPFKANTDAARYI 142 Query: 139 VFPFDKNNPGSN--------MQQFELTIRYTPRLPKQADTLENGSKPFLNVEQLRKEITP 190 FPF + + +F+L + ++P P Q + EN LR E+ Sbjct: 143 AFPFIGKSDQEDSLPDEFLPFAEFQLALSFSP--PVQPGSEEN---------SLRNEVEA 191 Query: 191 ALWAWINFGGLGSRTRRGCGSLYCKDFAPERTSTHPKYEDWFHGKVADYELELDTQLEKK 250 ALWAW+NFGGLG+RTRRG GSL C F+P+ P+ W K+ Y + L +++ Sbjct: 192 ALWAWVNFGGLGARTRRGFGSLSCAVFSPQ----SPEIPQWLEEKLNSYGILLG---QER 244 Query: 251 EWPTLSRSVIIQEYERDMISAWNDVIKLYHNFRSQPNNTYIYS-KPPKYER--------- 300 WPTL + D +AW + + FR ++ S K K+ R Sbjct: 245 PWPTL-KDFFYSARGADNCTAWLNAVHPLKLFR---QGEFVKSGKGNKHRRKSSADMVGR 300 Query: 301 -----SLWPEADSLRRGTGMSXXXXMSEEDHKKPSPFKKQEFFSFPRAQLGLPIIFQFKQ 355 SLWPEA+++R +++ SP +FPRA GLPII QFKQ Sbjct: 301 DGSNHSLWPEANAIR-------TILKKARYYRESSPNN-----AFPRAAFGLPIITQFKQ 348 Query: 356 DEYLKKRYSNFREPYNMQLAP----KDKSRLASPLITKALARSDKRGVG------IIVKL 405 N + +L P + + R+ASPLITK+L G G IV+L Sbjct: 349 ---------NNDDISGTELYPIVNDEPRGRMASPLITKSLNMCPPSGGGSEQGYPFIVRL 399 Query: 406 NQPRLSELELKVIENKEDKRKRSPRDFAHIESIEELVAHKPIREKDIYKELSYPGSPMKQ 465 + S L L+ E K + E I+ + + I D + YP SPM Sbjct: 400 STALPSGLGLRKTEEK------------NPEVIDAPLDKRAIVNPDFTQ---YPDSPMDS 444 Query: 466 GQ-KSAIQAFL 475 SAI+AFL Sbjct: 445 ASGGSAIEAFL 455 >C1TQB5.1 C1TQB5_9BACT CRISPR-associated protein, Cmr1 family Length = 423 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 124/372 (33%), Positives = 177/372 (47%), Gaps = 58/372 (15%) Query: 30 EDRFNITIVTPMFGGGSKPGFTDSAFPIRSASIRGHLRFWWRATRGAAFESVTELRQREV 89 E+ + I++VTPMFGGG K G D P+R +IRGHLRFWWRAT G F S EL RE Sbjct: 22 EETYRISVVTPMFGGGVKAGEVDGKHPVRGTAIRGHLRFWWRATCGRKFSSSQELYHRES 81 Query: 90 EIFGDSHSPSRVKISVHIFNKTEPEKGKEHSASINNETPKRTVRLPRYAVFPFDKNNPGS 149 +I+GD+ S V+ISV E + N P++ YA+F +N G Sbjct: 82 QIWGDTEKASPVRISVSKHTSIETKAVDR----FKNFGPEQ------YALFSAKQN--GQ 129 Query: 150 NMQQFELTIRYTPRLPKQADTLENGSKPFLNVEQLRKEITPALWAWINFGGLGSRTRRGC 209 + L+ P D ++ K +R E+ AL AW++FGG+GSRTRRG Sbjct: 130 EVATEGLSFDLNVSAPDYIDGYQDIKKTTPIKVSVRDEVLCALRAWLSFGGIGSRTRRGL 189 Query: 210 GSLYCKDFAPERTSTHPKYEDWFHGKVADYELELDTQLEKKEWPTLSRSVIIQEYERDMI 269 G+L+ ED+ ++D + SV+I + + Sbjct: 190 GALH--------NDGTDLGEDYLSNCLSD---------------GVFASVLISNPKGGAM 226 Query: 270 SAWNDVIKLYHNFRSQ---------PNNTYIYSKPPKYERSLWPEADSLRRGTGMSXXXX 320 +AW D +++Y +FR NN + P R+ WPEAD++R TG S Sbjct: 227 AAWRDSVEVYRSFRQGFRGAIHEKVLNNGKVLHVP---GRTFWPEADAIRDITGCSTPK- 282 Query: 321 MSEEDHKKP-SPFKKQEFFSFPRAQLGLPIIFQFKQDEYLKKRYSNFREPYNMQLAPKDK 379 H +P P + SFPRA LGLPIIFQF + K R + R+P + P Sbjct: 283 -----HSEPIVPNVARR--SFPRAHLGLPIIFQFVDGD--KNRARSDRDPSPTTIKPSGA 333 Query: 380 SRLASPLITKAL 391 R++SP+IT+ + Sbjct: 334 ERMSSPIITRPI 345 >B1I5K8.1 B1I5K8_DESAP CRISPR-associated RAMP protein, Cmr1 family Length = 452 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 128/410 (31%), Positives = 192/410 (46%), Gaps = 58/410 (14%) Query: 37 IVTPMFGGGSKPGFTDSAFPIRSASIRGHLRFWWRATRGAAFES-VTELRQREVEIFGDS 95 ++TP+FGGG +PG TD IR IRG LRFWWRA RG F + +++ E E++G + Sbjct: 43 LITPLFGGGVEPGETDPVTVIRGPEIRGQLRFWWRACRGGRFNGDLAAMKEAEDELWGAA 102 Query: 96 HS-----PSRVKISVHIFNKTEPEKGKEHSASINN---ETPKRTVR-----LPRYAVFPF 142 + PS+V+I + I E + E A + + + PK V+ P YA FP Sbjct: 103 STERKPMPSQVEIMISIEQSGESKHPFEVVAGLVDGRKDQPKPKVKANEIVAPAYAAFPL 162 Query: 143 DKNNPGSNMQQFELTIRYTPRLPKQADTLENGSKPFLNVEQLRKEITPALWAWINFGGLG 202 + M+ + ++ K TL+ E+ R+E+ ALWAW FGG+G Sbjct: 163 QPSE--KEMRAGGIGMQTKTVRTKVCFTLK-----ITYPEKRREEVEAALWAWETFGGIG 215 Query: 203 SRTRRGCGS--LYCKDFAPERTSTHPKYEDWFHGKVADYELELDTQLEKKEWP------T 254 +RTRRG G+ L D P S + E A L + WP + Sbjct: 216 ARTRRGFGASKLVSVDGKPVTPSRANEVE-------AKIRKGLQKHVVSGTWPASVPHLS 268 Query: 255 LSRSVIIQEYERDMISAWNDVIKLYHNFRSQPNNTYIYSKPPKYERSLWPEADSLRRGTG 314 L+ + + D I+AW ++K +FR + Y + P + RS WPE D +RR T Sbjct: 269 LNPRMKVTGRRSDPIAAWEYLVKCLRDFR---QSRYPGASPRQPGRSQWPEPDEIRRLT- 324 Query: 315 MSXXXXMSEEDHKKPSPFKKQEFFSFPRAQLGLPIIFQFKQDEYLKKRYSNFREPYNMQL 374 + + S +K FPRA GLPI+F FK ++ +PY+ L Sbjct: 325 ----DRRCDRHARSLSTVRK-----FPRAAFGLPIVFHFKDEK--------IGDPYDTIL 367 Query: 375 APKDKSRLASPLITKALARSDKRGVGIIVKLNQPRLSELELKVIENKEDK 424 +D RLASPLI + LA +D VG+ V L ++ L +I K+++ Sbjct: 368 QGRDYERLASPLILRPLACADG-AVGLAVVLEGTGVTVLPDSLILRKKEE 416 >A5D0Z2.1 A5D0Z2_PELTS Uncharacterized protein Length = 444 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 126/419 (30%), Positives = 187/419 (44%), Gaps = 70/419 (16%) Query: 37 IVTPMFGGGSKPGFTDSAFPIRSASIRGHLRFWWRATRGAAFE-SVTELRQREVEIFGDS 95 ++TP+FGGG PG D +R IRG LRFWWRA RG F ++ E+R+ E +++G + Sbjct: 37 LITPLFGGGVNPGEADPITVVRGTEIRGQLRFWWRACRGGRFNGNLAEMREAEDKLWGAT 96 Query: 96 HS-----PSRVKISVHIFNKTEPEKGKEHSASINNETP------KRTVRLPRYAVFPFDK 144 + PS+V + + ++ E E+ E A P K +V LP YA FP Sbjct: 97 STEKKALPSQVDVVLLTWHAGESEQPFEVVADNRTGRPKPRLKAKESVALP-YAAFP--- 152 Query: 145 NNPGSNMQQFELTIRYTPRLPKQADTLENGSKPFLNV---EQLRKEITPALWAWINFGGL 201 +Q E IR + + T+ L + ++ ++E+ ALWAW FGG+ Sbjct: 153 ------LQPSEEEIRAG-GIGMKTKTVRTNVSFTLKITYPDKQQQEVEAALWAWETFGGV 205 Query: 202 GSRTRRGCGSLYCKDFAPERTSTHPKYEDWFHGKVADYELELDTQLEK----KEWP---- 253 G+RTRRG G+L + T P A E E+ LEK WP Sbjct: 206 GARTRRGFGALKLVSVD-GKPITQP--------GAAQIEAEIRQALEKHVMSGMWPDGVP 256 Query: 254 --TLSRSVIIQEYERDMISAWNDVIKLYHNFRSQPNNTYIYSKPPKYERSLWPEADSLRR 311 +L + I + +AW+ +I+ NFR + P + RS WPE D +RR Sbjct: 257 HLSLEPQMKITGRHAEPKAAWDYLIRHLRNFRQSRSG----GSPRQSGRSRWPEPDEIRR 312 Query: 312 GTGMSXXXXMSEEDHKKPSPFKKQEFFSFPRAQLGLPIIFQFKQDEYLKKRYSNFREPYN 371 TG H P FPRA GLP++F FK + +P + Sbjct: 313 LTGCQCSR------HAVPL----SNIGKFPRAAFGLPVVFHFKD--------RDAGDPCD 354 Query: 372 MQL--APKDKSRLASPLITKALARSDKRGVGIIVKLNQPRLSELELKVIENKEDKRKRS 428 +L +D RLASPLI + LA D VG+ + L + + ++ KE+ + S Sbjct: 355 TKLTCGEQDCDRLASPLILRPLACRDG-AVGLAMVLEGTGVGMVPGGLVLEKEEGSEES 412 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.134 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,129,140,306 Number of extensions: 135741675 Number of successful extensions: 293463 Number of sequences better than 1.0e-05: 27 Number of HSP's gapped: 293416 Number of HSP's successfully gapped: 28 Length of query: 495 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 355 Effective length of database: 1,741,754,103 Effective search space: 618322706565 Effective search space used: 618322706565 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)