BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0045.p (379 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJ30.1 B3KJ30_9BACI Primosomal protein N' 356 2e-96 B1DHL6.1 B1DHL6_9BACL Primosomal protein N' 245 5e-63 A4IM45.1 A4IM45_GEOTN Primosomal protein N 203 3e-50 B4BJ96.1 B4BJ96_9BACI Primosomal protein N' 203 3e-50 C3J056.1 C3J056_9BACI Primosomal protein N' 202 5e-50 >B3KJ30.1 B3KJ30_9BACI Primosomal protein N' Length = 842 Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 181/322 (56%), Positives = 226/322 (70%), Gaps = 1/322 (0%) Query: 1 MEIAKVIVDVPVRSTDRPFDYLIPDPLKLWIEVGSRVAVPFGHRTVQGFVVSLESGETGT 60 ME+A+VIVDVP + TDRPFDYLIP+ L+ W+EVGSRV VPFGHRT+QGFVVSL Sbjct: 1 MEMARVIVDVPSKDTDRPFDYLIPEELRPWVEVGSRVGVPFGHRTLQGFVVSLHPRPEMD 60 Query: 61 VSGMKPIQXXXXXXXXXXXXXXXXGDWMSQRYACRRISALQAMLPTALKGKAERLITLGD 120 + MKPIQ G+WM +RYACR ISALQ+MLPTALKGKAER I+LG+ Sbjct: 61 TAKMKPIQEVLDVMPPLSPELIELGEWMKERYACRYISALQSMLPTALKGKAERYISLGE 120 Query: 121 AADEGNTTADELFPLFLETDLEENRISEFVRRHGEVSMKLLTRTFPQAAETVKFMLRRGV 180 + + LF L E++LE+ I FV + GEVS++ LTR FP AA TVK ++ RG Sbjct: 121 PDAGLSDESGGLFALLPESELEQE-IIRFVSQRGEVSLQQLTRAFPDAAATVKALIGRGR 179 Query: 181 LAESQSIKDKMGKKKLKAVDLAIGLAAARESLAGFPARSARQKEVLSFLIDMEAMLPMPM 240 L+E Q IKDK+ KK +KAV+LA+ A +LA FP ++ RQKEVL ++++ME LP+ Sbjct: 180 LSEFQQIKDKLQKKTMKAVELAVSSEEAHVALASFPVKAQRQKEVLQYIVEMEDFLPISQ 239 Query: 241 KDILSILQVTAGTVKALEDKGFIEISEIEVYRDPYRGRDFKPSTPLPLTNEQETVYNRIA 300 KD+L L VTAGTVKAL DKG I + ++EV+RDPYRGR F PS PL LT EQ+ VY I Sbjct: 240 KDLLQTLGVTAGTVKALADKGLITLEDVEVFRDPYRGRHFTPSAPLALTPEQQAVYRSIV 299 Query: 301 ATVDEQRHEVFLLHGVTGSGKT 322 +DE++H FLLHGVTGSGKT Sbjct: 300 RKLDERKHGAFLLHGVTGSGKT 321 >B1DHL6.1 B1DHL6_9BACL Primosomal protein N' Length = 833 Score = 245 bits (626), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 142/323 (43%), Positives = 195/323 (60%), Gaps = 15/323 (4%) Query: 3 IAKVIVDVPVRSTDRPFDYLIPDPLKLWIEVGSRVAVPFGHRTVQGFVVSLESGETGTVS 62 IAKVIVDVP R TDRPFDY +P ++ WIEVGSRV VPFG R +QGFV+ L ET V Sbjct: 2 IAKVIVDVPSRQTDRPFDYKVPPGMENWIEVGSRVGVPFGPRVLQGFVIEL--AETADVD 59 Query: 63 GMK--PIQXXXXXXXXXXXXXXXXGDWMSQRYACRRISALQAMLPTALKGKAERLITLGD 120 MK + WMS +Y C +ALQAM+P ALKGKAER I+L D Sbjct: 60 PMKLKAVSELLDPVPPLLPDLIELAKWMSDKYCCSWTTALQAMIPAALKGKAERYISLND 119 Query: 121 AADEGNTTADELFPLFLETDLEENRISEFVRRHGEVSMKLLTRTFPQAAETVKFMLRRGV 180 D TA++ + T L + ++ R ++ ++ L + +P+ +K LR G+ Sbjct: 120 DPD---YTAED----YGLTALLPEEMLTWIGRQKQLKLETLQQRYPEQTAAIKEALRDGL 172 Query: 181 LAESQSIKDKMGKKKLKAVDLAIGLAAARESLAGFPARSARQKEVLSFLIDM-EAMLPMP 239 L E SI+D++ +K+ V AAARE+LA FPAR+ +Q+E+L+F+++ EAM P Sbjct: 173 LQEQTSIRDRLAIRKVLTVFPPDDEAAAREALANFPARAGKQRELLAFMLERGEAM---P 229 Query: 240 MKDILSILQVTAGTVKALEDKGFIEISEIEVYRDPYRGRDFKPSTPLPLTNEQETVYNRI 299 ++ +L+ + +V+AL DKG + + E+E RDPY GRDF+ + PLPL Q+ VY RI Sbjct: 230 LQALLAEAGGSPASVRALADKGLLGLHEVEQERDPYAGRDFERTVPLPLMPGQQDVYERI 289 Query: 300 AATVDEQRHEVFLLHGVTGSGKT 322 A TV +V LLHGVTGSGKT Sbjct: 290 AGTVSRGEPQVLLLHGVTGSGKT 312 >A4IM45.1 A4IM45_GEOTN Primosomal protein N Length = 801 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 130/323 (40%), Positives = 184/323 (56%), Gaps = 26/323 (8%) Query: 1 MEIAKVIVDVPVRSTDRPFDYLIPDPLKLWIEVGSRVAVPFGHRTVQGFVVSLESGETGT 60 M++A VIVDVP R TDRPFDYLIP+ + I+ G RV VPFG R +QGFV+ ++ + Sbjct: 1 MKVASVIVDVPTRQTDRPFDYLIPERWRGIIQPGMRVTVPFGARRLQGFVIGVK--DHSE 58 Query: 61 VSGMKPIQXXXXXXXXXXXXXXXXGDWMSQRYACRRISALQAMLPTALKGKAERLITLGD 120 + +KPI+ G ++++ C ISA QAMLP A++ K E+L+ L D Sbjct: 59 IKQLKPIEHVLDVVPVLNEELLDLGRYLTETTLCFAISAYQAMLPAAMRAKYEKLLRLTD 118 Query: 121 AADEGNTTADELFPLFLETDLEENRISEFVRRHGEVSMK-LLTRTFPQAAETVKFMLRRG 179 D+L PLF NR+ EV+ K + T +AA+ +++G Sbjct: 119 ERKR-EALPDDLKPLF------ANRV--------EVAWKDVETAGLWRAAQRA---VQQG 160 Query: 180 VLAESQSIKDKMGKKKLKAVDLAIGLAAARESLAGFPARSARQKEVLSFLIDMEAMLPMP 239 VL +K+K GKK +K V LA+ A+++LA PAR QK+VLSFL++ E +P+ Sbjct: 161 VLEAVYEVKEKAGKKTVKHVVLAVPAEQAKDALAALPAR---QKDVLSFLLEKEEAVPV- 216 Query: 240 MKDILSILQVTAGTVKALEDKGFIEISEIEVYRDPYRGRDFKPSTPLPLTNEQETVYNRI 299 + + L V++ +KAL KG I +S++EVYRDPY R F+PS P LT Q I Sbjct: 217 -AKLQAALGVSSAPLKALVGKGLIAMSDVEVYRDPYEHRTFQPSEPPTLTQAQTKALAAI 275 Query: 300 AATVDEQRHEVFLLHGVTGSGKT 322 A+V + H FLL+GVTGSGKT Sbjct: 276 TASVRAREHRTFLLYGVTGSGKT 298 >B4BJ96.1 B4BJ96_9BACI Primosomal protein N' Length = 620 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 130/323 (40%), Positives = 184/323 (56%), Gaps = 26/323 (8%) Query: 1 MEIAKVIVDVPVRSTDRPFDYLIPDPLKLWIEVGSRVAVPFGHRTVQGFVVSLESGETGT 60 M++A VIVDVP R TDRPFDYLIP+ + I+ G RV VPFG R +QGFV+ ++ + Sbjct: 1 MKVASVIVDVPTRQTDRPFDYLIPERWRGIIQPGMRVTVPFGARRLQGFVIGVK--DHSE 58 Query: 61 VSGMKPIQXXXXXXXXXXXXXXXXGDWMSQRYACRRISALQAMLPTALKGKAERLITLGD 120 + +KPI+ G ++++ C ISA QAMLP A++ K E+L+ L D Sbjct: 59 IKQLKPIEHVLDVVPVLNEELLDLGRYLTETTLCFAISAYQAMLPAAMRAKYEKLLRLTD 118 Query: 121 AADEGNTTADELFPLFLETDLEENRISEFVRRHGEVSMK-LLTRTFPQAAETVKFMLRRG 179 D+L PLF NR+ EV+ K + T +AA+ +++G Sbjct: 119 ERKR-EALPDDLKPLF------ANRV--------EVAWKDVETAGLWRAAQRA---VQQG 160 Query: 180 VLAESQSIKDKMGKKKLKAVDLAIGLAAARESLAGFPARSARQKEVLSFLIDMEAMLPMP 239 VL +K+K GKK +K V LA+ A+++LA PAR QK+VLSFL++ E +P+ Sbjct: 161 VLEAVYEVKEKAGKKTVKHVVLAVPAEQAKDALAALPAR---QKDVLSFLLEKEEAVPV- 216 Query: 240 MKDILSILQVTAGTVKALEDKGFIEISEIEVYRDPYRGRDFKPSTPLPLTNEQETVYNRI 299 + + L V++ +KAL KG I +S++EVYRDPY R F+PS P LT Q I Sbjct: 217 -AKLQAALGVSSAPLKALVGKGLIAMSDVEVYRDPYEHRTFQPSEPPTLTQAQTKALAAI 275 Query: 300 AATVDEQRHEVFLLHGVTGSGKT 322 A+V + H FLL+GVTGSGKT Sbjct: 276 TASVRAREHRTFLLYGVTGSGKT 298 >C3J056.1 C3J056_9BACI Primosomal protein N' Length = 801 Score = 202 bits (514), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 130/322 (40%), Positives = 179/322 (55%), Gaps = 24/322 (7%) Query: 1 MEIAKVIVDVPVRSTDRPFDYLIPDPLKLWIEVGSRVAVPFGHRTVQGFVVSLESGETGT 60 M++A VIVDVP R TDRPFDY IP+ + I+ G RV VPFG R +QGFVV ++ + Sbjct: 1 MKVASVIVDVPSRQTDRPFDYWIPERWQGVIQPGMRVTVPFGARRLQGFVVDVK--DHSD 58 Query: 61 VSGMKPIQXXXXXXXXXXXXXXXXGDWMSQRYACRRISALQAMLPTALKGKAERLITLGD 120 + +KPI+ G ++++ C ISA QAMLP A++ K E+ + L D Sbjct: 59 IKQLKPIEHVLDVVPVLNEELLDLGRYLTETTLCFAISAYQAMLPAAMRAKYEKTLRLTD 118 Query: 121 AADEGNTTADELFPLFLETDLEENRISEFVRRHGEVSMKLLTRTFPQAAETVKFMLRRGV 180 G DE+ PLF R + EV L R +A +++GV Sbjct: 119 EEKRGRLP-DEVKPLF------AGRTEAPWK---EVEAAGLWRAAQKA-------VQQGV 161 Query: 181 LAESQSIKDKMGKKKLKAVDLAIGLAAARESLAGFPARSARQKEVLSFLIDMEAMLPMPM 240 L +K+K GKK +K LAI A++ L PAR QKEVLSFL +E P+ Sbjct: 162 LEAVYKVKEKAGKKTVKHAALAIPSEQAKQELGSLPAR---QKEVLSFL--LEKGEAAPV 216 Query: 241 KDILSILQVTAGTVKALEDKGFIEISEIEVYRDPYRGRDFKPSTPLPLTNEQETVYNRIA 300 ++ ++L V++ +KAL DKGF+ ++++EVYRDPY R F+PS P LT QE +IA Sbjct: 217 AELQAVLGVSSAPLKALVDKGFVVLNDVEVYRDPYEHRTFQPSEPPALTRAQEAALAKIA 276 Query: 301 ATVDEQRHEVFLLHGVTGSGKT 322 A+V H FLL+GVTGSGKT Sbjct: 277 ASVRAGEHRTFLLYGVTGSGKT 298 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,923,370,352 Number of extensions: 69247348 Number of successful extensions: 199861 Number of sequences better than 1.0e-05: 385 Number of HSP's gapped: 199295 Number of HSP's successfully gapped: 404 Length of query: 379 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 242 Effective length of database: 1,770,017,148 Effective search space: 428344149816 Effective search space used: 428344149816 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)