BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0044.p (471 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJ30.1 B3KJ30_9BACI Primosomal protein N' 806 0.0 B1DHL6.1 B1DHL6_9BACL Primosomal protein N' 662 0.0 C0ZFZ9.1 C0ZFZ9_BREBN Primosomal protein N' 562 e-158 A6CPT3.1 A6CPT3_9BACI Primosome assembly protein PriA 558 e-157 Q2B790.1 Q2B790_9BACI Primosome assembly protein PriA 556 e-156 >B3KJ30.1 B3KJ30_9BACI Primosomal protein N' Length = 842 Score = 806 bits (2081), Expect = 0.0, Method: Compositional matrix adjust. Identities = 379/470 (80%), Positives = 417/470 (88%) Query: 2 GERYDEWRKIREGKASVAVGARSAVFAPFVSLGLIIMDEEHESSYKQEENPKYHARDVAV 61 GERYDEWRKIREG+ASV VGARSAVFAPF LGLIIMDEEHESSYKQEE PKYHARDVA+ Sbjct: 373 GERYDEWRKIREGRASVVVGARSAVFAPFDRLGLIIMDEEHESSYKQEETPKYHARDVAI 432 Query: 62 RRAEQAGAAVILGSATPSLESYHAARSQSDIHFSPVLLHMPSRALGNELPKVHVTDMREE 121 RA GAAVILGSATPSLESYHAARSQ+ F+P LL MPSRALGN+LP V V DMREE Sbjct: 433 HRASLTGAAVILGSATPSLESYHAARSQAQDDFAPHLLEMPSRALGNQLPAVQVVDMREE 492 Query: 122 LKEGNRSMFSRRLHAALESRLERGEQTVLLLNRRGFSTFVMCRSCGYVAGCPDCDISLTY 181 L+EGNRSMFSR LHAA+ +RLERGEQTVLLLNRRG+STFVMCRSCGYVAGCP+CDISLTY Sbjct: 493 LREGNRSMFSRSLHAAISARLERGEQTVLLLNRRGYSTFVMCRSCGYVAGCPECDISLTY 552 Query: 182 HSRSDNLRCHYCGHAEPAPKLCPECGSEHIRFFGTGTQRVEEELGKLFPGIRVIRMDVDT 241 H +S+NLRCHYCG+A AP++CP+CGSEHIR+FGTGTQRVEEEL KLFPGIRVIRMDVDT Sbjct: 553 HQKSNNLRCHYCGYAAQAPEVCPDCGSEHIRYFGTGTQRVEEELAKLFPGIRVIRMDVDT 612 Query: 242 TTEKGSHEKLLNQFRDKKADVLLGTQMVAKGLDFPDVTLVGVITADSALNLPDFRAAEKT 301 TTEKGSHEKLL QFRDKK DVLLGTQMVAKGLDFPDVTLVGVITADSALNLPDFRAAEKT Sbjct: 613 TTEKGSHEKLLKQFRDKKGDVLLGTQMVAKGLDFPDVTLVGVITADSALNLPDFRAAEKT 672 Query: 302 FQLLTQVAGRAGRHQLPGEVVVQSYTPEHYSIVHASGHDYHSFVREELKHRRELHYPPYC 361 FQLLTQVAGRAGRHQLPGEVV+QSYTPEHYSI+HAS HDY SFV++ELKHR+ LHYPPYC Sbjct: 673 FQLLTQVAGRAGRHQLPGEVVIQSYTPEHYSIIHASSHDYLSFVKDELKHRKALHYPPYC 732 Query: 362 RLILVTLSHEQLPVLLRLAENYALNLQGKARQLRWFGXXXXXXXXXXXXXGPVASPLPRL 421 RLILVTLSHEQLP+L+RLAEN+A ++ ++ + WFG GPVASP+PRL Sbjct: 733 RLILVTLSHEQLPLLVRLAENFAAAIKSESDRRGWFGSLDRFDASALDILGPVASPIPRL 792 Query: 422 KGRYRFQCIIKWRGSIDAIGLARQVAEELEDSVRDTGLQISLDVDPQMLM 471 K RYRFQC+IKWRG++DA+ L R VAE+L+DS RD LQIS+DVDPQMLM Sbjct: 793 KNRYRFQCMIKWRGTMDAVSLVRSVAEKLQDSARDGKLQISIDVDPQMLM 842 >B1DHL6.1 B1DHL6_9BACL Primosomal protein N' Length = 833 Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/470 (68%), Positives = 370/470 (78%) Query: 2 GERYDEWRKIREGKASVAVGARSAVFAPFVSLGLIIMDEEHESSYKQEENPKYHARDVAV 61 GERYDEWRKIR + VA+GARSA+FAPF +GLII+DEEHESSYKQEE+PKYHARDVAV Sbjct: 364 GERYDEWRKIRSRRVQVAIGARSAIFAPFERIGLIIIDEEHESSYKQEESPKYHARDVAV 423 Query: 62 RRAEQAGAAVILGSATPSLESYHAARSQSDIHFSPVLLHMPSRALGNELPKVHVTDMREE 121 RRA Q GAAV+LGSATPSLES+ AA Q LL MP R +P V V DMR E Sbjct: 424 RRARQHGAAVVLGSATPSLESFAAASRQPAPGKESALLPMPERVGSRPMPPVQVIDMRGE 483 Query: 122 LKEGNRSMFSRRLHAALESRLERGEQTVLLLNRRGFSTFVMCRSCGYVAGCPDCDISLTY 181 L++GNRSMFSR+LHAAL RLERGEQ+VLLLNRRG+STFVMCRSCGY A CP CDISLTY Sbjct: 484 LQDGNRSMFSRKLHAALADRLERGEQSVLLLNRRGYSTFVMCRSCGYTAACPHCDISLTY 543 Query: 182 HSRSDNLRCHYCGHAEPAPKLCPECGSEHIRFFGTGTQRVEEELGKLFPGIRVIRMDVDT 241 H +S LRCHYCGHAE APK CP C SEHIR+FGTGTQRVEEEL KLFPGIRVIRMDVDT Sbjct: 544 HQKSRALRCHYCGHAELAPKECPSCSSEHIRYFGTGTQRVEEELAKLFPGIRVIRMDVDT 603 Query: 242 TTEKGSHEKLLNQFRDKKADVLLGTQMVAKGLDFPDVTLVGVITADSALNLPDFRAAEKT 301 T+EK SHEKLL QF ++KADVLLGTQMVAKGLDFP VTLVGVI AD++LNLPDFR+AE+T Sbjct: 604 TSEKHSHEKLLKQFGERKADVLLGTQMVAKGLDFPYVTLVGVIAADTSLNLPDFRSAERT 663 Query: 302 FQLLTQVAGRAGRHQLPGEVVVQSYTPEHYSIVHASGHDYHSFVREELKHRRELHYPPYC 361 FQLLTQVAGRAGRH LPGEV++Q+Y+PEHY+I+ A HDY +FVREELKHR + YPPYC Sbjct: 664 FQLLTQVAGRAGRHHLPGEVIIQTYSPEHYAILTAQHHDYAAFVREELKHRSVMGYPPYC 723 Query: 362 RLILVTLSHEQLPVLLRLAENYALNLQGKARQLRWFGXXXXXXXXXXXXXGPVASPLPRL 421 RL+LVT+SHEQLP+L ++E +A L+G A G GPVASP+ R+ Sbjct: 724 RLVLVTMSHEQLPLLSSVSEQFAERLRGLASDEGVLGPLEGGLPRAMDILGPVASPISRM 783 Query: 422 KGRYRFQCIIKWRGSIDAIGLARQVAEELEDSVRDTGLQISLDVDPQMLM 471 K RYRFQC+IK+RG+ID L R + + +Q S+DVDPQ+++ Sbjct: 784 KDRYRFQCVIKYRGNIDIPALLRHAMAPFVEGSQAKLVQFSIDVDPQVIL 833 >C0ZFZ9.1 C0ZFZ9_BREBN Primosomal protein N' Length = 811 Score = 562 bits (1448), Expect = e-158, Method: Compositional matrix adjust. Identities = 272/471 (57%), Positives = 341/471 (72%), Gaps = 20/471 (4%) Query: 2 GERYDEWRKIREGKASVAVGARSAVFAPFVSLGLIIMDEEHESSYKQEENPKYHARDVAV 61 GER+DEWRKI + V VGARSA+FAPF ++GLI++DEEHESSYKQEE P+YHAR+VA+ Sbjct: 360 GERFDEWRKIIRKQVKVVVGARSAIFAPFRNVGLIVIDEEHESSYKQEETPRYHAREVAL 419 Query: 62 RRAEQAGAAVILGSATPSLESYH-AARSQSDIHFSPVLLHMPSRALGNELPKVHVTDMRE 120 RA++ +++GSATP+LE+Y A R + + LL MP R +P+VHV DMRE Sbjct: 420 WRAKENQGVLVMGSATPALETYALATRGRYE------LLRMPERVGNRPMPEVHVVDMRE 473 Query: 121 ELKEGNRSMFSRRLHAALESRLERGEQTVLLLNRRGFSTFVMCRSCGYVAGCPDCDISLT 180 EL+ NRSMFSR+LH + RL + EQ V+ LNRRGFSTFVMCRSCGY C CDISLT Sbjct: 474 ELQAQNRSMFSRKLHEMIADRLAKEEQMVIFLNRRGFSTFVMCRSCGYTMRCIHCDISLT 533 Query: 181 YHSRSDNLRCHYCGHAEPAPKLCPECGSEHIRFFGTGTQRVEEELGKLFPGIRVIRMDVD 240 YH + RCHYCG+ PK CPEC SEHIRFFGTGTQ+VE EL KLFPGIRVIRMDVD Sbjct: 534 YHKSNHTARCHYCGYTIAQPKHCPECQSEHIRFFGTGTQKVEAELAKLFPGIRVIRMDVD 593 Query: 241 TTTEKGSHEKLLNQFRDKKADVLLGTQMVAKGLDFPDVTLVGVITADSALNLPDFRAAEK 300 TT+ KGSHE+LLN+FR + DVLLGTQM+AKGLDFP VTL G+I AD++L+LPDFRAAEK Sbjct: 594 TTSRKGSHEELLNKFRSGQGDVLLGTQMIAKGLDFPRVTLAGIIAADTSLHLPDFRAAEK 653 Query: 301 TFQLLTQVAGRAGRHQLPGEVVVQSYTPEHYSIVHASGHDYHSFVREELKHRRELHYPPY 360 TFQLLTQV GRAGRH+L G+VV+Q+YTPEHYSIVHA+ HDY +F ++E+ RR YPPY Sbjct: 654 TFQLLTQVGGRAGRHELDGDVVIQTYTPEHYSIVHATKHDYPAFYQDEMMQRRRTGYPPY 713 Query: 361 CRLILVTLSHEQLPVLLRLAENYALNLQGKARQLRWFGXXXXXXXXXXXXXGPVASPLPR 420 RL+L+T SHE++PV++R A A L+ + Q GPVASP+ R Sbjct: 714 FRLVLITFSHEEVPVVIRGAHTMADYLRQRLAQ-------------TTILLGPVASPIAR 760 Query: 421 LKGRYRFQCIIKWRGSIDAIGLARQVAEELEDSVRDTGLQISLDVDPQMLM 471 +K R+RFQ ++K+R L Q E+ + + +++DVDP +L+ Sbjct: 761 VKDRFRFQIMLKYRDEPQLSELLAQATAAFEEWNKQQKVLMTIDVDPYVLL 811 >A6CPT3.1 A6CPT3_9BACI Primosome assembly protein PriA Length = 805 Score = 558 bits (1437), Expect = e-157, Method: Compositional matrix adjust. Identities = 266/470 (56%), Positives = 342/470 (72%), Gaps = 18/470 (3%) Query: 2 GERYDEWRKIREGKASVAVGARSAVFAPFVSLGLIIMDEEHESSYKQEENPKYHARDVAV 61 GE+YDEWRKI+ + V VGARSA+FAPF +LG+II+DEEHE+SYKQEENP+YHARD A+ Sbjct: 354 GEKYDEWRKIQRKEVKVVVGARSAIFAPFENLGIIIIDEEHETSYKQEENPRYHARDAAI 413 Query: 62 RRAEQAGAAVILGSATPSLESYHAARSQSDIHFSPVLLHMPSRALGNELPKVHVTDMREE 121 RA+Q G VILGSATPS+E++ AR+Q ++ LL + R + LP V + DMREE Sbjct: 414 YRAKQYGCPVILGSATPSMETF--ARAQKGVY---KLLTLSKRMNESRLPSVSIVDMREE 468 Query: 122 LKEGNRSMFSRRLHAALESRLERGEQTVLLLNRRGFSTFVMCRSCGYVAGCPDCDISLTY 181 L+ GNRSMFS L L+ RL++GEQTVL LNRRG S+F+MCR CGYVA CP CDISLT+ Sbjct: 469 LRGGNRSMFSEELFEKLQDRLQKGEQTVLFLNRRGHSSFIMCRDCGYVAQCPHCDISLTF 528 Query: 182 HSRSDNLRCHYCGHAEPAPKLCPECGSEHIRFFGTGTQRVEEELGKLFPGIRVIRMDVDT 241 H S+N++CHYCG P+ CPEC SEHIR+FGTGTQ+VEEEL KL P RVIRMDVDT Sbjct: 529 HRFSNNMKCHYCGFETAVPQTCPECESEHIRYFGTGTQKVEEELTKLLPEARVIRMDVDT 588 Query: 242 TTEKGSHEKLLNQFRDKKADVLLGTQMVAKGLDFPDVTLVGVITADSALNLPDFRAAEKT 301 T+ KG+HE+LL+ F + AD+LLGTQM+AKGLDFP++TLVGV++AD+ L+LPDFR+AEKT Sbjct: 589 TSRKGAHERLLDSFGEGHADILLGTQMIAKGLDFPNITLVGVLSADTMLHLPDFRSAEKT 648 Query: 302 FQLLTQVAGRAGRHQLPGEVVVQSYTPEHYSIVHASGHDYHSFVREELKHRRELHYPPYC 361 FQLLTQV+GRAGRH+LPGEVV+Q+YTPEHYSI A +Y +F ++E+ R+ YPP+ Sbjct: 649 FQLLTQVSGRAGRHKLPGEVVIQTYTPEHYSIELAGTQNYDAFYQKEMMMRKMGSYPPFY 708 Query: 362 RLILVTLSHEQLPVLLRLAENYALNLQGKARQLRWFGXXXXXXXXXXXXXGPVASPLPRL 421 L L+T+SHE L ++ AE LQ K + GP ASP+PR+ Sbjct: 709 YLSLITISHEDLLKVVGAAEKITKFLQSKLSK-------------QSIVLGPAASPIPRI 755 Query: 422 KGRYRFQCIIKWRGSIDAIGLARQVAEELEDSVRDTGLQISLDVDPQMLM 471 RYR+QC+IK++ + + + V E + GL IS+DV+P M+M Sbjct: 756 NNRYRYQCLIKYKREPELPSILKTVLEHSQQQKASEGLTISIDVNPYMMM 805 >Q2B790.1 Q2B790_9BACI Primosome assembly protein PriA Length = 802 Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust. Identities = 268/474 (56%), Positives = 346/474 (72%), Gaps = 27/474 (5%) Query: 2 GERYDEWRKIREGKASVAVGARSAVFAPFVSLGLIIMDEEHESSYKQEENPKYHARDVAV 61 GE+YDEWRKI+ + V VGARSAVFAPF +LG+II+DEEHE+SYKQEENP+YHARD A+ Sbjct: 352 GEKYDEWRKIQRKEVKVVVGARSAVFAPFENLGIIIIDEEHENSYKQEENPRYHARDAAI 411 Query: 62 RRAEQAGAAVILGSATPSLESYHAARSQSDIHFSPVLLHMPSRALGNELPKVHVTDMREE 121 RA+ V+LGSATPSLE++ AR+Q ++ L + R LPKV + DMREE Sbjct: 412 ERAQYHSCPVVLGSATPSLETF--ARAQKGVYKK---LELTKRMNSQPLPKVEIVDMREE 466 Query: 122 LKEGNRSMFSRRLHAALESRLERGEQTVLLLNRRGFSTFVMCRSCGYVAGCPDCDISLTY 181 L+EGNRSMFSR+L L+ RLE+ EQTVL LN+RG S+FVMCR CGYV CP+CDISLTY Sbjct: 467 LREGNRSMFSRQLLEKLKDRLEKKEQTVLFLNKRGHSSFVMCRDCGYVVNCPNCDISLTY 526 Query: 182 HSRSDNLRCHYCGHAEPAPKLCPECGSEHIRFFGTGTQRVEEELGKLFPGIRVIRMDVDT 241 H S ++CHYCGH + P +CPECGSEHIR+FGTGTQ+VEEELGK+ P RV+RMDVDT Sbjct: 527 HQYSQQMKCHYCGHEDHVPPVCPECGSEHIRYFGTGTQKVEEELGKILPEARVVRMDVDT 586 Query: 242 TTEKGSHEKLLNQFRDKKADVLLGTQMVAKGLDFPDVTLVGVITADSALNLPDFRAAEKT 301 T+ KGSHE+LLN+F++ AD+LLGTQM+AKGLDFP++TLVGV++AD+ L+LPDFRA+EKT Sbjct: 587 TSRKGSHERLLNEFQEGHADILLGTQMIAKGLDFPNITLVGVLSADTMLHLPDFRASEKT 646 Query: 302 FQLLTQVAGRAGRHQLPGEVVVQSYTPEHYSIVHASGHDYHSFVREELKHRRELHYPPYC 361 FQLLTQV+GRAGRH+L GEVV+Q+YTPEHYSI A D+ SF R E+ R+ YPP+ Sbjct: 647 FQLLTQVSGRAGRHELEGEVVIQTYTPEHYSIELAGEQDFESFYRTEMMVRKMHQYPPFY 706 Query: 362 RLILVTLSHEQL----PVLLRLAENYALNLQGKARQLRWFGXXXXXXXXXXXXXGPVASP 417 + L+T+SHE L V ++ + A L +A L GPVASP Sbjct: 707 YISLITVSHEDLMKAVSVTEKITQFAAARLSPEANIL-----------------GPVASP 749 Query: 418 LPRLKGRYRFQCIIKWRGSIDAIGLARQVAEELEDSVRDTGLQISLDVDPQMLM 471 +PR+ RYR+QC+IK++ + + V + + + GLQIS+D++P ++M Sbjct: 750 IPRINNRYRYQCLIKYKREPGLEKVLKSVLDHYQQEI-SAGLQISVDLNPYIMM 802 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,687,327,650 Number of extensions: 109022957 Number of successful extensions: 315327 Number of sequences better than 1.0e-05: 1482 Number of HSP's gapped: 312365 Number of HSP's successfully gapped: 1493 Length of query: 471 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 332 Effective length of database: 1,751,175,118 Effective search space: 581390139176 Effective search space used: 581390139176 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)