BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0043.p (169 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJ31.1 B3KJ31_9BACI Peptide deformylase 277 3e-73 B1DHL5.1 B1DHL5_9BACL Peptide deformylase 211 2e-53 C0ZFZ8.1 C0ZFZ8_BREBN Peptide deformylase EC=3.5.1.88 195 1e-48 C0GIQ0.1 C0GIQ0_9FIRM Peptide deformylase 184 2e-45 Q67PR5.1 DEF_SYMTH Peptide deformylase EC=3.5.1.88 178 2e-43 >B3KJ31.1 B3KJ31_9BACI Peptide deformylase Length = 164 Score = 277 bits (708), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 134/157 (85%), Positives = 145/157 (92%) Query: 9 MAIRLIVKEPDEVLHKTAKTVTKITHNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 68 MAIR+IVKEPDEVLHK AK VTKIT NVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV Sbjct: 1 MAIRIIVKEPDEVLHKKAKEVTKITPNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 60 Query: 69 VDADEEHGLIKLINPEIVSMEGEQFGPEGCLSIPGLNGDVRRAETVTVRGLDREGNEVTI 128 +DA +EHGLIK+INPEIV EGEQFGPEGCLSIPG NGDVRRAE VTV+GLDREGNE+ I Sbjct: 61 IDAGDEHGLIKMINPEIVESEGEQFGPEGCLSIPGWNGDVRRAEKVTVKGLDREGNELVI 120 Query: 129 TGSGLLARAFQHEIDHLNGVLFTDIAEKVYEYTAERS 165 TG+GLLARAFQHEIDHLNGVLFT+IA++VYEY E+ Sbjct: 121 TGTGLLARAFQHEIDHLNGVLFTEIADRVYEYVPEQP 157 >B1DHL5.1 B1DHL5_9BACL Peptide deformylase Length = 155 Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 102/155 (65%), Positives = 121/155 (78%) Query: 15 VKEPDEVLHKTAKTVTKITHNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIVVDADEE 74 +KEPD VL +TAK VTK N+QKLL DMA+TMYDA+GVGLAAPQ+GI KR+IVVD +E Sbjct: 1 MKEPDPVLRETAKEVTKFNSNLQKLLKDMAETMYDADGVGLAAPQIGISKRVIVVDIGDE 60 Query: 75 HGLIKLINPEIVSMEGEQFGPEGCLSIPGLNGDVRRAETVTVRGLDREGNEVTITGSGLL 134 GLI ++NP IV EGEQ GPEGCLSIP LNGDV+R E + + G D EGN T+ SG L Sbjct: 61 TGLISMVNPVIVENEGEQVGPEGCLSIPNLNGDVKRYERIVINGQDGEGNPFTVEASGFL 120 Query: 135 ARAFQHEIDHLNGVLFTDIAEKVYEYTAERSETGE 169 A AFQHEIDHLNG+LFTDIA+ VY+ TA + + GE Sbjct: 121 AVAFQHEIDHLNGILFTDIAQNVYDITARQRKGGE 155 >C0ZFZ8.1 C0ZFZ8_BREBN Peptide deformylase EC=3.5.1.88 Length = 158 Score = 195 bits (496), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 98/157 (62%), Positives = 118/157 (75%), Gaps = 3/157 (1%) Query: 9 MAIRLIVKEPDEVLHKTAKTVTKITHNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 68 MAIR IVK PD +L + A VTK N+ KLLDDMADTMYDA+GVGLAAPQVGI KR+IV Sbjct: 1 MAIRTIVKHPDPILREKAMVVTKFNSNLHKLLDDMADTMYDADGVGLAAPQVGISKRVIV 60 Query: 69 VDADEEHGLIKLINPEIVSMEGEQFG-PEGCLSIPGLNGDVRRAETVTVRGLDREGNEVT 127 +D + GLI++INPEI+ EGEQ+ PEGCLSIPGL GDVRR + + +RG DR GN V Sbjct: 61 MDCGD--GLIEMINPEIIEHEGEQYDYPEGCLSIPGLQGDVRRHKWIKLRGHDRNGNVVE 118 Query: 128 ITGSGLLARAFQHEIDHLNGVLFTDIAEKVYEYTAER 164 + LL+R QHEIDHLNGVLF D+A+KVY+ + Sbjct: 119 LEADDLLSRCAQHEIDHLNGVLFIDVADKVYKVNPNQ 155 >C0GIQ0.1 C0GIQ0_9FIRM Peptide deformylase Length = 154 Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 92/151 (60%), Positives = 115/151 (76%) Query: 9 MAIRLIVKEPDEVLHKTAKTVTKITHNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 68 MAIR+I D VL + AK V +IT V+KLL+DM +TMYDAEG+GLAAPQVGI KR+IV Sbjct: 1 MAIRIIRTTGDPVLREKAKEVPEITPQVKKLLEDMVETMYDAEGIGLAAPQVGISKRIIV 60 Query: 69 VDADEEHGLIKLINPEIVSMEGEQFGPEGCLSIPGLNGDVRRAETVTVRGLDREGNEVTI 128 +D +E G++KLINPEI+S EG++ EGCLS PG+ G+V R E+VTVR D +GN V I Sbjct: 61 IDVQDETGVLKLINPEIISGEGKETSVEGCLSFPGVAGEVERDESVTVRAQDPDGNTVEI 120 Query: 129 TGSGLLARAFQHEIDHLNGVLFTDIAEKVYE 159 SGLLARAFQHEIDHL+G+LF D ++ E Sbjct: 121 CASGLLARAFQHEIDHLDGILFVDKVTRLLE 151 >Q67PR5.1 DEF_SYMTH Peptide deformylase EC=3.5.1.88 Length = 217 Score = 178 bits (451), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 94/145 (64%), Positives = 106/145 (73%), Gaps = 1/145 (0%) Query: 9 MAIRLIVKEPDEVLHKTAKTVTKITHNVQKLLDDMADTMYDAEGVGLAAPQVGILKRLIV 68 MAI IVKEP EVL K AK VTKI +++KLLDDM +TMY A GVGLAAPQVG+ KRLIV Sbjct: 1 MAILEIVKEPAEVLRKKAKPVTKINASIRKLLDDMTETMYAAPGVGLAAPQVGVSKRLIV 60 Query: 69 VDADEEHG-LIKLINPEIVSMEGEQFGPEGCLSIPGLNGDVRRAETVTVRGLDREGNEVT 127 VD + G L +LINPEIV EG G EGCLSIPG+ GDV R E V V LDR G +V Sbjct: 61 VDPQDGSGQLYQLINPEIVKAEGWVKGTEGCLSIPGMVGDVWRYEKVQVVALDRTGKKVW 120 Query: 128 ITGSGLLARAFQHEIDHLNGVLFTD 152 I G LAR FQHEIDHL+G+L+TD Sbjct: 121 IDAEGYLARIFQHEIDHLDGILYTD 145 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 991,174,924 Number of extensions: 40411187 Number of successful extensions: 107546 Number of sequences better than 1.0e-05: 2451 Number of HSP's gapped: 104991 Number of HSP's successfully gapped: 2452 Length of query: 169 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 44 Effective length of database: 1,883,069,328 Effective search space: 82855050432 Effective search space used: 82855050432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 126 (53.1 bits)