BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0042.p (273 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJ32.1 B3KJ32_9BACI Methionyl-tRNA formyltransferase 392 e-107 B1DHL4.1 B1DHL4_9BACL Methionyl-tRNA formyltransferase 360 5e-98 Q9K9Y6.1 FMT_BACHD Methionyl-tRNA formyltransferase EC=2.1.2.9 299 2e-79 A8FD38.1 FMT_BACP2 Methionyl-tRNA formyltransferase EC=2.1.2.9 298 2e-79 C0ZFZ7.1 C0ZFZ7_BREBN Methionyl-tRNA formyltransferase EC=2.1.2.9 295 2e-78 >B3KJ32.1 B3KJ32_9BACI Methionyl-tRNA formyltransferase Length = 313 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 182/240 (75%), Positives = 214/240 (89%) Query: 1 MKIVFMGTPAFAVPSLQMLVKEGYEVVAVITQPDRPQGRKKTLTPSPVKEAAISLGLPVL 60 M IVFMGTPAFAVPSL+ML+ EGY + AV+TQPDRPQGRKK LTP+PVKEAA+ G+PVL Sbjct: 1 MNIVFMGTPAFAVPSLEMLIAEGYTIAAVVTQPDRPQGRKKVLTPTPVKEAALRHGIPVL 60 Query: 61 QPERLRRPESVAELAAYEPDLIVTAAYGQILPKTVLELPQYGCVNVHGSLLPKYRGGAPI 120 QP+RLR PE+VAELA Y+PDLIVTAAYGQILPK+VL++P GC+NVHGSLLP YRGGAPI Sbjct: 61 QPQRLRNPEAVAELAEYKPDLIVTAAYGQILPKSVLDMPALGCLNVHGSLLPAYRGGAPI 120 Query: 121 QRCIINGEKLTGVTLMYMAEGLDTGDMISRVEVPIGEEDTSGILFEKLSLAGCELLKTEM 180 QR IINGE +TG+TLMYMAEGLDTGDMI+R EVPI ++DT+G +FEKLS AG ELL+ E+ Sbjct: 121 QRSIINGEPVTGITLMYMAEGLDTGDMIARTEVPIEDDDTAGTMFEKLSQAGAELLRREL 180 Query: 181 PRLAAGRVQATPQDDSEATYAPNLTREDERIDWSAGSQDIYNRIRGLVPFSGAFTLWNGE 240 PRL GRV+A PQDDS+ATYAPNLTR+DE+IDWS S++IY++IRGLVP+SG FTLWNGE Sbjct: 181 PRLVKGRVEAEPQDDSKATYAPNLTRDDEKIDWSRTSREIYDQIRGLVPYSGGFTLWNGE 240 >B1DHL4.1 B1DHL4_9BACL Methionyl-tRNA formyltransferase Length = 316 Score = 360 bits (925), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 168/240 (70%), Positives = 206/240 (85%) Query: 1 MKIVFMGTPAFAVPSLQMLVKEGYEVVAVITQPDRPQGRKKTLTPSPVKEAAISLGLPVL 60 M+IVFMGTP FAVPSL++L+++GY+VVA ++QPDRP+GRK+ LTP P+KEAA++ GLPVL Sbjct: 1 MRIVFMGTPEFAVPSLRLLIEQGYDVVAAVSQPDRPKGRKRVLTPPPLKEAALAFGLPVL 60 Query: 61 QPERLRRPESVAELAAYEPDLIVTAAYGQILPKTVLELPQYGCVNVHGSLLPKYRGGAPI 120 QPER+R E+VA +A +PDLIVTAAYGQILPK +L++P+ GC+NVHGSLLP+YRGGAPI Sbjct: 61 QPERMRSAEAVAAIAELQPDLIVTAAYGQILPKALLDIPRLGCINVHGSLLPRYRGGAPI 120 Query: 121 QRCIINGEKLTGVTLMYMAEGLDTGDMISRVEVPIGEEDTSGILFEKLSLAGCELLKTEM 180 QR IINGE +TGVT+MYMAEGLDTGDMIS++EVPI +EDTSG LFEKLS AG ELL + Sbjct: 121 QRSIINGETVTGVTIMYMAEGLDTGDMISKIEVPITDEDTSGTLFEKLSAAGAELLGRTL 180 Query: 181 PRLAAGRVQATPQDDSEATYAPNLTREDERIDWSAGSQDIYNRIRGLVPFSGAFTLWNGE 240 P L AG +QA PQD+ ATYAPNLTREDERIDWS ++ I+N++RGL P +GAFT NGE Sbjct: 181 PALLAGELQAEPQDNELATYAPNLTREDERIDWSKPARSIFNQVRGLSPMAGAFTYLNGE 240 >Q9K9Y6.1 FMT_BACHD Methionyl-tRNA formyltransferase EC=2.1.2.9 Length = 317 Score = 299 bits (765), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 141/240 (58%), Positives = 180/240 (75%) Query: 1 MKIVFMGTPAFAVPSLQMLVKEGYEVVAVITQPDRPQGRKKTLTPSPVKEAAISLGLPVL 60 MKIVFMGTP F+VP L+ L+++GY + AV+TQPDRP GRK+ LTP PVK A +PVL Sbjct: 1 MKIVFMGTPDFSVPVLRRLIEDGYTIAAVVTQPDRPVGRKRVLTPPPVKVEAEKHQIPVL 60 Query: 61 QPERLRRPESVAELAAYEPDLIVTAAYGQILPKTVLELPQYGCVNVHGSLLPKYRGGAPI 120 QPE++R + L ++EPDLIVTAA+GQILP +LE P++GC+NVH SLLPKYRGGAPI Sbjct: 61 QPEKIRDEAELERLFSFEPDLIVTAAFGQILPNALLEYPKHGCINVHASLLPKYRGGAPI 120 Query: 121 QRCIINGEKLTGVTLMYMAEGLDTGDMISRVEVPIGEEDTSGILFEKLSLAGCELLKTEM 180 + II+GEK TG+T+MYMAE LD GD++++V VPI ++D G L KLS AG LL + Sbjct: 121 HQAIIDGEKETGITIMYMAEKLDAGDILTQVTVPIADDDHVGSLHNKLSEAGAALLAKTI 180 Query: 181 PRLAAGRVQATPQDDSEATYAPNLTREDERIDWSAGSQDIYNRIRGLVPFSGAFTLWNGE 240 P L G +Q+ PQDD AT+APN+TRE E IDW + IYN+IRGL P+ A+TLWNG+ Sbjct: 181 PPLIKGELQSIPQDDQLATFAPNITREKEEIDWRKEGERIYNQIRGLHPWPVAYTLWNGK 240 >A8FD38.1 FMT_BACP2 Methionyl-tRNA formyltransferase EC=2.1.2.9 Length = 317 Score = 298 bits (764), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 139/238 (58%), Positives = 181/238 (76%) Query: 2 KIVFMGTPAFAVPSLQMLVKEGYEVVAVITQPDRPQGRKKTLTPSPVKEAAISLGLPVLQ 61 +IVFMGTP F+VP LQ L+ EGYEVV V+TQPDRP+GRK+ LTP PVK A+ G+PVLQ Sbjct: 3 RIVFMGTPDFSVPVLQTLITEGYEVVGVVTQPDRPKGRKRVLTPPPVKVEALKHGIPVLQ 62 Query: 62 PERLRRPESVAELAAYEPDLIVTAAYGQILPKTVLELPQYGCVNVHGSLLPKYRGGAPIQ 121 PE++R E + ++ A +PDLIVTAA+GQILPK +L+ PQ+GC+NVH SLLP+ RGGAPI Sbjct: 63 PEKVRLDEEIDKVLALKPDLIVTAAFGQILPKRLLDEPQFGCINVHASLLPELRGGAPIH 122 Query: 122 RCIINGEKLTGVTLMYMAEGLDTGDMISRVEVPIGEEDTSGILFEKLSLAGCELLKTEMP 181 I+ G+K TGVT+MYM E LD GDMIS+VEV I E D G L +KLS+AG LLK +P Sbjct: 123 YAILQGKKKTGVTIMYMVERLDAGDMISKVEVEIDELDNVGTLHDKLSVAGAALLKDTVP 182 Query: 182 RLAAGRVQATPQDDSEATYAPNLTREDERIDWSAGSQDIYNRIRGLVPFSGAFTLWNG 239 + +G + PQ++ ATYAPN+ RE ER+DW+ +++YN++RGL P+ A+T WNG Sbjct: 183 NVLSGSISPIPQNEDAATYAPNIKREQERLDWTKTGEELYNQVRGLNPWPVAYTEWNG 240 >C0ZFZ7.1 C0ZFZ7_BREBN Methionyl-tRNA formyltransferase EC=2.1.2.9 Length = 316 Score = 295 bits (756), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 142/239 (59%), Positives = 181/239 (75%) Query: 2 KIVFMGTPAFAVPSLQMLVKEGYEVVAVITQPDRPQGRKKTLTPSPVKEAAISLGLPVLQ 61 +I+FMGTP FAV SL +++ GY V+ V+TQPDRP GRK+ LTP PVKEAA+ GL VLQ Sbjct: 5 RILFMGTPDFAVSSLTAVLEAGYNVIGVVTQPDRPVGRKQVLTPPPVKEAALRHGLLVLQ 64 Query: 62 PERLRRPESVAELAAYEPDLIVTAAYGQILPKTVLELPQYGCVNVHGSLLPKYRGGAPIQ 121 PE+++ E++ E+ A +PDLI+TAAYGQILPK +L+ P+YGC+NVH SLLPKYRGGAPI Sbjct: 65 PEKIKAEEALEEVLALKPDLIITAAYGQILPKKLLDAPKYGCINVHASLLPKYRGGAPIH 124 Query: 122 RCIINGEKLTGVTLMYMAEGLDTGDMISRVEVPIGEEDTSGILFEKLSLAGCELLKTEMP 181 + I+ GE TGVT+MYM E LD GDM+S+V VPI E DT G L +KL+ AG ELL +P Sbjct: 125 KSIVEGEAETGVTIMYMVEALDAGDMLSKVVVPIEERDTVGTLHDKLAAAGSELLIATVP 184 Query: 182 RLAAGRVQATPQDDSEATYAPNLTREDERIDWSAGSQDIYNRIRGLVPFSGAFTLWNGE 240 L AG + A QD SEAT+APN+ R DE+IDWS ++ IYN++RGL P+ AFT G+ Sbjct: 185 PLLAGELVAEQQDHSEATFAPNIKRTDEKIDWSRSAEQIYNQVRGLNPWPVAFTTCEGK 243 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,588,075,502 Number of extensions: 66433436 Number of successful extensions: 156035 Number of sequences better than 1.0e-05: 3047 Number of HSP's gapped: 154152 Number of HSP's successfully gapped: 3047 Length of query: 273 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 139 Effective length of database: 1,798,280,193 Effective search space: 249960946827 Effective search space used: 249960946827 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)