BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0041.p (489 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJ33.1 B3KJ33_9BACI Sun protein 570 e-160 B1DHL3.1 B1DHL3_9BACL Sun protein 494 e-137 C0ZFZ6.1 C0ZFZ6_BREBN Probable ribosomal RNA small subunit methy... 457 e-127 Q9K9Y7.1 Q9K9Y7_BACHD BH2507 protein 440 e-121 Q4MJ65.1 Q4MJ65_BACCE Sun protein EC=2.1.1.- 432 e-119 >B3KJ33.1 B3KJ33_9BACI Sun protein Length = 442 Score = 570 bits (1470), Expect = e-160, Method: Compositional matrix adjust. Identities = 287/441 (65%), Positives = 336/441 (76%), Gaps = 4/441 (0%) Query: 49 LDILVRVEQQGAYSNLLLNSSLQKTALSREDAGLATELVYGSISRLLTLDYVLDGFVSKG 108 +++L +VEQ+GAYSNLLLNS+LQK++L++ DAGLATEL+YG+ISRL TLDY LD FV+KG Sbjct: 1 MNVLTQVEQEGAYSNLLLNSALQKSSLAKSDAGLATELIYGTISRLNTLDYFLDKFVNKG 60 Query: 109 IAKLQPWVRNLLRLSLYQIMYLDRIPSHAAVNEAVNIAKKRGHQGISGMVNGVLRSVLRA 168 + KLQPWVR LLR+SLYQI+YLDRIP HA V+EAVN+AK+RGHQGISGMVNGVLR++LR Sbjct: 61 VRKLQPWVRALLRISLYQIVYLDRIPDHAVVSEAVNLAKRRGHQGISGMVNGVLRNILRQ 120 Query: 169 GELPVLPENLS--PEQRISILHSHPLWMVKQWAAEYGLDAAEAMCAANNEPPAASVRVNL 226 E + P S S + YG A+CAANNEPPA SVRVN Sbjct: 121 KETLAISGGYDGRPAHFPSAFPSAVAGGALDFPVRYG--GNRAICAANNEPPAVSVRVNT 178 Query: 227 TMISREALLEQMLEAGLAASPSLVSPYGIVVKGGGNLALTSWYRDGYLSVQDESSMLVAE 286 TMISR+ +L+ M GL ASPS VSPYGIVVKG GN+ALT WYR+G +S+QDESSMLVAE Sbjct: 179 TMISRDDMLKLMGNHGLDASPSSVSPYGIVVKGAGNMALTDWYREGMISIQDESSMLVAE 238 Query: 287 AVAPEPGMRVLDCCAAPGGKSAHMGELMKDEGYIYANDLHPHKARLIADQAQRLGLECIA 346 AV PEPGMRVLDCCAAPGGKSAHMGELM DEG I AND+H HK +LI+DQA RLGL+ I+ Sbjct: 239 AVQPEPGMRVLDCCAAPGGKSAHMGELMNDEGSIVANDIHAHKGKLISDQASRLGLDSIS 298 Query: 347 IGSTDALRLAQTFEPESFDRILLDAPCSGLGVIRRKPDLKWRKQPEDVASVAALQAELLQ 406 I + DAL LA FEP SFDRILLDAPCSGLGVIRRKPDLKW K ED+ +AALQ LL+ Sbjct: 299 IVTGDALDLADRFEPASFDRILLDAPCSGLGVIRRKPDLKWGKSQEDIHEIAALQLRLLE 358 Query: 407 SVSRLLKPGGILVYSTCTTEQAENSSVIAEFLGNNPGFTSATFTSPVWQRVEGTALAAGE 466 SVS LL+PGGILVYSTCT E EN V++ FL + F A R+ +LA G Sbjct: 359 SVSTLLRPGGILVYSTCTIEPRENEGVVSAFLEGHSEFAIAEDGLGALSRLGENSLARGG 418 Query: 467 GLQLLPQHYGSDGFYISRLQR 487 G+Q+LPQHY SDGFYI+RL R Sbjct: 419 GIQILPQHYHSDGFYIARLGR 439 >B1DHL3.1 B1DHL3_9BACL Sun protein Length = 491 Score = 494 bits (1271), Expect = e-137, Method: Compositional matrix adjust. Identities = 256/453 (56%), Positives = 321/453 (70%), Gaps = 10/453 (2%) Query: 43 SAREAALDILVRVEQQGAYSNLLLNSSLQKTALSREDAGLATELVYGSISRLLTLDYVLD 102 + RE ALD LV+V + GAYSNL LN LQ+ L R DA L TELVYG+I R LTLD+ L Sbjct: 39 TPRELALDTLVKVAETGAYSNLQLNRVLQEAQLQRADAALVTELVYGTIQRQLTLDHWLG 98 Query: 103 GFVSKGIAKLQPWVRNLLRLSLYQIMYLDRIPSHAAVNEAVNIAKKRGHQGISGMVNGVL 162 F +KG+ KL+PWV LLR+S YQ++YLDRIP+HAAVNEAV IAK+RGHQGISGMVNG+L Sbjct: 99 KFAAKGLRKLEPWVHQLLRMSAYQLLYLDRIPAHAAVNEAVTIAKRRGHQGISGMVNGIL 158 Query: 163 RSVLR-AGELPVLP-ENLSPEQRISILHSHPLWMVKQWAAEYGLDAAEAMCAANNEPPAA 220 RS+ R EL V + +P +IS+ +S+P W+V++W YG + AEA+CA+ NEPP A Sbjct: 159 RSIDRNRAELTVDAIADKNPVVQISVRYSYPEWLVERWVKAYGAETAEAICASGNEPPHA 218 Query: 221 SVRVNLTMISREALLEQMLEAGLAASPSLVSPYGIVVKGGGNLALTSWYRDGYLSVQDES 280 SVRVN SR +L + E G A S ++P GIVV+ GGNLA T +RDG ++QDES Sbjct: 219 SVRVNPLRSSRNEVLSLLTEQGGDAEASRLAPAGIVVRRGGNLADTEGFRDGLWTMQDES 278 Query: 281 SMLVAEAVAPEPGMRVLDCCAAPGGKSAHMGELMKDEGYIYANDLHPHKARLIADQAQRL 340 SMLVAE VAP+ GM+VLDCCAAPGGK+ HM ELM +G +YANDLHPHK +LI DQA RL Sbjct: 279 SMLVAEVVAPKAGMQVLDCCAAPGGKTTHMAELMSGKGKVYANDLHPHKRQLIVDQAVRL 338 Query: 341 GLECIAIGSTDALRLAQTFEPESFDRILLDAPCSGLGVIRRKPDLKWRKQPEDVASVAAL 400 GL+ I + DA +L + F P S D +LLDAPCSG GVIRRKP++KW K DVA +AA+ Sbjct: 339 GLQNIEAITEDAGKLGERFAPASIDAVLLDAPCSGFGVIRRKPEIKWTKTAGDVAEIAAI 398 Query: 401 QAELLQSVSRLLKPGGILVYSTCTTEQAENSSVIAEFLGNNPGFT-----SATFTSPVWQ 455 Q LL +V+ L+KPGG LVYSTCT E EN +A FL +P F +P+ Sbjct: 399 QRRLLGAVAGLVKPGGTLVYSTCTIESTENEEQVAVFLKEHPEFQLDAEWPEEALAPL-- 456 Query: 456 RVEGTALAAGEG-LQLLPQHYGSDGFYISRLQR 487 R +G ++ +G QLLP HYGSDGF+I+RL+R Sbjct: 457 REKGIIDSSFDGQAQLLPHHYGSDGFFIARLRR 489 >C0ZFZ6.1 C0ZFZ6_BREBN Probable ribosomal RNA small subunit methyltransferase EC=2.1.1.- Length = 448 Score = 457 bits (1177), Expect = e-127, Method: Compositional matrix adjust. Identities = 233/453 (51%), Positives = 316/453 (69%), Gaps = 13/453 (2%) Query: 40 AAESAREAALDILVRVEQQGAYSNLLLNSSLQKTALSREDAGLATELVYGSISRLLTLDY 99 A + AR+ ALD+L RVE+ +YSNL L + L + LS DAGL TELVYG+I R +TLD+ Sbjct: 2 AKKGARDIALDVLNRVEEHKSYSNLELRNVLDRENLSAADAGLVTELVYGTIQRKMTLDH 61 Query: 100 VLDGFVSKGIAKLQPWVRNLLRLSLYQIMYLDRIPSHAAVNEAVNIAKKRGHQGISGMVN 159 VL FV G K+Q WVRNLLRLSLYQI +LDRIP AAV++AV IAKKRGHQGI+ MVN Sbjct: 62 VLSHFV--GNKKVQTWVRNLLRLSLYQIHFLDRIPERAAVHQAVEIAKKRGHQGIASMVN 119 Query: 160 GVLRSVLRAGELPVLPENLSPEQRISILHSHPLWMVKQWAAEYGLDAAEAMCAANNEPPA 219 GVLR+VLR ++ S +I++ +SHP W+V+QW YG + A+C ANN P Sbjct: 120 GVLRNVLRQPDVWERQPKGSRALQIAVAYSHPEWLVRQWLNVYGEETTIAICEANNRTPH 179 Query: 220 ASVRVNLTMISREALLEQMLEAGLAASPSLVSPYGIVVKGGGNLALTSWYRDGYLSVQDE 279 +++RVN +++ +L+++ E GL S VSP+ I+++ GG++A + +++GY ++QDE Sbjct: 180 SAIRVNAWKTTKDQVLDKLAEEGLEGQASSVSPHAILME-GGHVAGSRLFKEGYFTIQDE 238 Query: 280 SSMLVAEAVAPEPGMRVLDCCAAPGGKSAHMGELMKDEGYIYANDLHPHKARLIADQAQR 339 SSMLVA A+A +PGMRVLD CAAPGGK+ H+ E+M++ G I A+D+HPHK LIA+ A+R Sbjct: 239 SSMLVAPALAAQPGMRVLDACAAPGGKTTHIAEMMENRGEIIASDVHPHKRDLIANAAKR 298 Query: 340 LGLECIAIGSTDALRLAQTFEPE----SFDRILLDAPCSGLGVIRRKPDLKWRKQPEDVA 395 LG+ I +DAL L PE +FDRILLDAPC+G GVIRRKPDLKW K PEDV Sbjct: 299 LGITIIQPIVSDALDL-----PEKALGTFDRILLDAPCTGFGVIRRKPDLKWNKTPEDVR 353 Query: 396 SVAALQAELLQSVSRLLKPGGILVYSTCTTEQAENSSVIAEFLGNNPGFT-SATFTSPVW 454 ++A LQ ELL++++ LL GG++VYSTCT E AEN ++ F+ +P F T + Sbjct: 354 AIAQLQYELLKTLAPLLAEGGVMVYSTCTIEPAENQEIVRRFVEEHPDFVFDDTLAQDLP 413 Query: 455 QRVEGTALAAGEGLQLLPQHYGSDGFYISRLQR 487 + V G G +Q+LP H+ SDGF+I+RL+R Sbjct: 414 EAVRGHVDETGACVQILPHHFESDGFFIARLKR 446 >Q9K9Y7.1 Q9K9Y7_BACHD BH2507 protein Length = 450 Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust. Identities = 219/449 (48%), Positives = 307/449 (68%), Gaps = 3/449 (0%) Query: 40 AAESAREAALDILVRVEQQGAYSNLLLNSSLQKTALSREDAGLATELVYGSISRLLTLDY 99 AA+S RE AL+ LV++E+ AYSNLLLN +++ L D GL TELVYG++ R TLDY Sbjct: 2 AAKSVREVALETLVQIEKSQAYSNLLLNQKIKQANLEPRDIGLLTELVYGTVQRQKTLDY 61 Query: 100 VLDGFVSKGIAKLQPWVRNLLRLSLYQIMYLDRIPSHAAVNEAVNIAKKRGHQGISGMVN 159 + FV+KG KL+ WVR LLRLS+YQ++YLD++P HA ++EAVNIAKKRGH+GISG+VN Sbjct: 62 YIASFVAKGKRKLEDWVRILLRLSVYQLVYLDKVPPHAIIHEAVNIAKKRGHKGISGLVN 121 Query: 160 GVLRSVLRAGELPVLPENLSPEQRISILHSHPLWMVKQWAAEYGLDAAEAMCAANNEPPA 219 GVLRS+ R G +P +R+++ +S+P W+VK+W +YG + ++C PP Sbjct: 122 GVLRSMQRQG-MPPFAAIEDKVKRLAVEYSYPEWLVKRWIDQYGEEETVSICEEMLLPPK 180 Query: 220 ASVRVNLTMISREALLEQMLEAGLAASPSLVSPYGIVVKGGGNLALTSWYRDGYLSVQDE 279 + RVN+ + E LE++ G+ A+ ++S IVV G + T ++DG L++QDE Sbjct: 181 VTARVNVRKRTVEEALERLEHEGVQATNGVLSDDAIVV-DKGTITSTRLFQDGELTIQDE 239 Query: 280 SSMLVAEAVAPEPGMRVLDCCAAPGGKSAHMGELMKDEGYIYANDLHPHKARLIADQAQR 339 SSMLVA AVAP PG R+LD CAAPGGKS HM E M EG I + D+H HK +LI +QA+R Sbjct: 240 SSMLVARAVAPRPGERILDACAAPGGKSTHMAERMDGEGTIVSLDMHRHKVKLIEEQAKR 299 Query: 340 LGLECIAIGSTDALRLAQTFEPESFDRILLDAPCSGLGVIRRKPDLKWRKQPEDVASVAA 399 LGL+ I + DA + + F E FDRIL+DAPCSGLGVIRRKPD+KW K+ D+ ++ Sbjct: 300 LGLDNIKAQTLDARKAREVFADEPFDRILVDAPCSGLGVIRRKPDIKWTKREADMKAIRN 359 Query: 400 LQAELLQSVSRLLKPGGILVYSTCTTEQAENSSVIAEFLGNNPGFT-SATFTSPVWQRVE 458 +Q ++L SV++L+KPGG+L+YSTCT +Q EN VIAEF+ + F+ T + V+ Sbjct: 360 VQLDILSSVAKLVKPGGLLIYSTCTIDQLENEQVIAEFMEAHGEFSIDDTVLDRLPAAVQ 419 Query: 459 GTALAAGEGLQLLPQHYGSDGFYISRLQR 487 T + +LP H+G+DGF+I+ L++ Sbjct: 420 ATCNIREGMVTILPHHFGTDGFFITCLKK 448 >Q4MJ65.1 Q4MJ65_BACCE Sun protein EC=2.1.1.- Length = 444 Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust. Identities = 216/446 (48%), Positives = 303/446 (67%), Gaps = 6/446 (1%) Query: 42 ESAREAALDILVRVEQQGAYSNLLLNSSLQKTALSREDAGLATELVYGSISRLLTLDYVL 101 ++ RE ALD L++VE+ GAYSNLLLN+ ++K+ + R+D GL TE+VYG+I R TLDY L Sbjct: 3 QNVRELALDGLIQVEKSGAYSNLLLNNLIEKSTIDRKDIGLLTEIVYGTIQRRDTLDYYL 62 Query: 102 DGFVSKGIAKLQPWVRNLLRLSLYQIMYLDRIPSHAAVNEAVNIAKKRGHQGISGMVNGV 161 F+ K K++ WVR LLRLSLYQ++YLDR+P AA++EAV IAK+RGH+GI+GMVNGV Sbjct: 63 QPFLKK---KVEAWVRVLLRLSLYQMIYLDRVPERAAIHEAVEIAKRRGHKGIAGMVNGV 119 Query: 162 LRSVLRAGELPVLPENLSPEQRISILHSHPLWMVKQWAAEYGLDAAEAMCAANNEPPAAS 221 LRS+ R G +P + E P +R++I SHP+W+V++W +EYGL+ AE MC N PP + Sbjct: 120 LRSIQREG-VPSVDEIKDPVERLAIATSHPIWLVQEWTSEYGLETAEKMCEVNMLPPVPT 178 Query: 222 VRVNLTMISREALLEQMLEAGLAASPSLVSPYGIVVKGGGNLALTSWYRDGYLSVQDESS 281 RVN+ I+ E + + G+ A +S I ++ G N+A T ++ G+LS+QDESS Sbjct: 179 ARVNVDKITVEEAIALLASEGIEAKRGDLSDDAIQIEKG-NVAHTDAFKKGFLSIQDESS 237 Query: 282 MLVAEAVAPEPGMRVLDCCAAPGGKSAHMGELMKDEGYIYANDLHPHKARLIADQAQRLG 341 MLVA A+ P+ G VLD CAAPGGK+ H+ E +K G + + DLH HK RLI QA+RLG Sbjct: 238 MLVARALEPDEGDVVLDSCAAPGGKTTHIAERLKGTGQVMSLDLHAHKVRLIKQQAERLG 297 Query: 342 LECIAIGSTDALRLAQTFEPESFDRILLDAPCSGLGVIRRKPDLKWRKQPEDVASVAALQ 401 LE + + DA ++ + F E+FD+IL+DAPCSG GVIRRKPD+K K D ++ +Q Sbjct: 298 LENVETKALDARKVQEHFANETFDKILVDAPCSGFGVIRRKPDIKLGKDKGDSERLSTIQ 357 Query: 402 AELLQSVSRLLKPGGILVYSTCTTEQAENSSVIAEFLGNNPGFTSATFTSPVWQRVEGTA 461 +L+ ++ LLK GG LVYSTCT E+ EN VI FL +P F T G+ Sbjct: 358 LAILEKIAPLLKQGGRLVYSTCTIEKIENEQVIERFLQEHPEFEWDTTIKERMPEKLGSY 417 Query: 462 LAAGEGLQLLPQHYGSDGFYISRLQR 487 + G+ +Q+LP ++ +DGFYI+ L++ Sbjct: 418 IDEGQ-VQILPHYFATDGFYIACLRK 442 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.132 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,665,156,741 Number of extensions: 108443538 Number of successful extensions: 328601 Number of sequences better than 1.0e-05: 2740 Number of HSP's gapped: 321381 Number of HSP's successfully gapped: 2770 Length of query: 489 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 349 Effective length of database: 1,741,754,103 Effective search space: 607872181947 Effective search space used: 607872181947 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)