BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0036.p (225 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJ38.1 B3KJ38_9BACI Ribulose-phosphate 3-epimerase EC=5.1.3.1 268 2e-70 B1DHK7.1 B1DHK7_9BACL Ribulose-phosphate 3-epimerase EC=5.1.3.1 243 1e-62 Q5L0R7.1 Q5L0R7_GEOKA Ribulose-phosphate 3-epimerase EC=5.1.3.1 241 3e-62 C3J048.1 C3J048_9BACI Ribulose-phosphate 3-epimerase EC=5.1.3.1 241 3e-62 B7Y8R1.1 B7Y8R1_9BACI Ribulose-phosphate 3-epimerase EC=5.1.3.1 241 3e-62 >B3KJ38.1 B3KJ38_9BACI Ribulose-phosphate 3-epimerase EC=5.1.3.1 Length = 219 Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 136/208 (65%), Positives = 158/208 (75%), Gaps = 3/208 (1%) Query: 1 MITIAPSILSXXXXXXXXXXXXXXXXKASGGDWIHVDVMDGHFVPNITLGPPIVKAVKAH 60 MI IAPSILS +ASG DWIHVDVMDGHFVPNITLGPPIV+A++ H Sbjct: 1 MIKIAPSILSADFAKLGQEIKEA---EASGADWIHVDVMDGHFVPNITLGPPIVQAIRPH 57 Query: 61 TSLPLDVHLMIENPERYIPEFAASGANVITVHAEACVHLHRVVHQIKELGLLAGVAINPG 120 T L LDVHLMIE PE YI +F +GA++ITVHAE C HLHRV+H IKE G+ AGVAINP Sbjct: 58 TGLTLDVHLMIEQPELYIADFVKAGADLITVHAETCPHLHRVIHLIKEHGVKAGVAINPA 117 Query: 121 TPASAVREVLEDVDMVLVMTVNPGFGGQSFIPHTLKKIRQIREWAREVNHTSLRIEVDGG 180 TPA ++EVL DVD+VLVMTVNPGFGGQ+FI T+ KI Q+REW ++ ++ IEVDGG Sbjct: 118 TPAHVLQEVLPDVDLVLVMTVNPGFGGQAFIERTVNKIAQLREWISNSDNPNIHIEVDGG 177 Query: 181 IAEATAPLVAEAGADVLVAGNAVFGRSD 208 I TAPLV EAGADVLVAG+AVFG+ D Sbjct: 178 ITAETAPLVVEAGADVLVAGSAVFGKPD 205 >B1DHK7.1 B1DHK7_9BACL Ribulose-phosphate 3-epimerase EC=5.1.3.1 Length = 214 Score = 243 bits (620), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 122/208 (58%), Positives = 148/208 (71%), Gaps = 3/208 (1%) Query: 1 MITIAPSILSXXXXXXXXXXXXXXXXKASGGDWIHVDVMDGHFVPNITLGPPIVKAVKAH 60 M IAPSILS + +G DWIHVDVMDGHFVPN+T GPP++ AV+ Sbjct: 1 MAIIAPSILSADFARLGDEIKAA---EEAGADWIHVDVMDGHFVPNLTFGPPVIAAVRPA 57 Query: 61 TSLPLDVHLMIENPERYIPEFAASGANVITVHAEACVHLHRVVHQIKELGLLAGVAINPG 120 T LP DVHLMIE PE IP +AA+GA+ ITVHAEA VHLHR + QIK+LGL AGVA+NPG Sbjct: 58 TKLPFDVHLMIERPELSIPSYAAAGADRITVHAEATVHLHRTIQQIKDLGLPAGVALNPG 117 Query: 121 TPASAVREVLEDVDMVLVMTVNPGFGGQSFIPHTLKKIRQIREWAREVNHTSLRIEVDGG 180 TP S + +L DVD++L+MTVNPGFGGQ+FI +L K+RQ+R+ E + ++VDGG Sbjct: 118 TPLSVLEHILGDVDLILIMTVNPGFGGQAFIEESLNKLRQLRKMLNERGLGHVHVQVDGG 177 Query: 181 IAEATAPLVAEAGADVLVAGNAVFGRSD 208 I TA V EAGA+VLVAGNAVFG D Sbjct: 178 INSVTAKQVVEAGANVLVAGNAVFGERD 205 >Q5L0R7.1 Q5L0R7_GEOKA Ribulose-phosphate 3-epimerase EC=5.1.3.1 Length = 220 Score = 241 bits (615), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 121/208 (58%), Positives = 148/208 (71%), Gaps = 4/208 (1%) Query: 1 MITIAPSILSXXXXXXXXXXXXXXXXKASGGDWIHVDVMDGHFVPNITLGPPIVKAVKAH 60 MI IAPSILS + G DWIHVD+MDGHFVPN+T GPP+V A++ Sbjct: 3 MIRIAPSILSADFARLAEEIRSV---EEGGADWIHVDIMDGHFVPNLTFGPPVVAAIRPV 59 Query: 61 TSLPLDVHLMIENPERYIPEFAASGANVITVHAEACVHLHRVVHQIKELGLLAGVAINPG 120 T LPLDVHLMI +P+RYIP FA +GA+VI+VH EACVHLHR +H IKE G+ AGV +NP Sbjct: 60 TKLPLDVHLMIADPDRYIPAFAKAGADVISVHVEACVHLHRTIHFIKEQGVKAGVVLNPH 119 Query: 121 TPASAVREVLEDVDMVLVMTVNPGFGGQSFIPHTLKKIRQIREWAREVNHTSLRIEVDGG 180 TP +R V+ DVD+VL+MTVNPGFGGQ+FIP + KIR++ A E N + IEVDGG Sbjct: 120 TPVEMIRHVIGDVDLVLLMTVNPGFGGQAFIPAVVPKIREVARMASEQN-KEVDIEVDGG 178 Query: 181 IAEATAPLVAEAGADVLVAGNAVFGRSD 208 I TAPL EAGA+VLVAG+A++ D Sbjct: 179 INAETAPLCVEAGANVLVAGSAIYNERD 206 >C3J048.1 C3J048_9BACI Ribulose-phosphate 3-epimerase EC=5.1.3.1 Length = 218 Score = 241 bits (615), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 121/208 (58%), Positives = 148/208 (71%), Gaps = 4/208 (1%) Query: 1 MITIAPSILSXXXXXXXXXXXXXXXXKASGGDWIHVDVMDGHFVPNITLGPPIVKAVKAH 60 MI IAPSILS + G DWIHVD+MDGHFVPN+T GPP+V A++ Sbjct: 1 MIRIAPSILSADFARLAEEIRSV---EEGGADWIHVDIMDGHFVPNLTFGPPVVAAIRPV 57 Query: 61 TSLPLDVHLMIENPERYIPEFAASGANVITVHAEACVHLHRVVHQIKELGLLAGVAINPG 120 T LPLDVHLMI +P+RYIP FA +GA+VI+VH EACVHLHR +H IKE G+ AGV +NP Sbjct: 58 TKLPLDVHLMIADPDRYIPAFAKAGADVISVHVEACVHLHRTIHFIKEQGVKAGVVLNPH 117 Query: 121 TPASAVREVLEDVDMVLVMTVNPGFGGQSFIPHTLKKIRQIREWAREVNHTSLRIEVDGG 180 TP +R V+ DVD+VL+MTVNPGFGGQ+FIP + KIR++ A E N + IEVDGG Sbjct: 118 TPVEMIRHVIGDVDLVLLMTVNPGFGGQAFIPAVVPKIREVARMASEQN-KEVDIEVDGG 176 Query: 181 IAEATAPLVAEAGADVLVAGNAVFGRSD 208 I TAPL EAGA+VLVAG+A++ D Sbjct: 177 INAETAPLCVEAGANVLVAGSAIYNERD 204 >B7Y8R1.1 B7Y8R1_9BACI Ribulose-phosphate 3-epimerase EC=5.1.3.1 Length = 218 Score = 241 bits (615), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 121/208 (58%), Positives = 148/208 (71%), Gaps = 4/208 (1%) Query: 1 MITIAPSILSXXXXXXXXXXXXXXXXKASGGDWIHVDVMDGHFVPNITLGPPIVKAVKAH 60 MI IAPSILS + G DWIHVD+MDGHFVPN+T GPP+V A++ Sbjct: 1 MIRIAPSILSADFARLAEEIRSV---EEGGADWIHVDIMDGHFVPNLTFGPPVVAAIRPV 57 Query: 61 TSLPLDVHLMIENPERYIPEFAASGANVITVHAEACVHLHRVVHQIKELGLLAGVAINPG 120 T LPLDVHLMI +P+RYIP FA +GA+VI+VH EACVHLHR +H IKE G+ AGV +NP Sbjct: 58 TKLPLDVHLMIADPDRYIPAFAKAGADVISVHVEACVHLHRTIHFIKEQGVKAGVVLNPH 117 Query: 121 TPASAVREVLEDVDMVLVMTVNPGFGGQSFIPHTLKKIRQIREWAREVNHTSLRIEVDGG 180 TP +R V+ DVD+VL+MTVNPGFGGQ+FIP + KIR++ A E N + IEVDGG Sbjct: 118 TPVEMIRHVIGDVDLVLLMTVNPGFGGQAFIPAVVPKIREVARMASEQN-KEVDIEVDGG 176 Query: 181 IAEATAPLVAEAGADVLVAGNAVFGRSD 208 I TAPL EAGA+VLVAG+A++ D Sbjct: 177 INAETAPLCVEAGANVLVAGSAIYNERD 204 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,191,956,663 Number of extensions: 47787724 Number of successful extensions: 138270 Number of sequences better than 1.0e-05: 1971 Number of HSP's gapped: 135337 Number of HSP's successfully gapped: 1972 Length of query: 225 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 94 Effective length of database: 1,826,543,238 Effective search space: 171695064372 Effective search space used: 171695064372 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)