BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0033.p (286 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJ41.1 B3KJ41_9BACI DegV family protein 353 9e-96 C0ZFX9.1 C0ZFX9_BREBN Putative uncharacterized protein 225 4e-57 A8VRU8.1 A8VRU8_9BACI Fibronectin-binding A domain protein 223 2e-56 Q5WFL7.1 Q5WFL7_BACSK Putative uncharacterized protein 215 4e-54 B2A2L4.1 B2A2L4_NATTJ DegV family protein 203 1e-50 >B3KJ41.1 B3KJ41_9BACI DegV family protein Length = 285 Score = 353 bits (906), Expect = 9e-96, Method: Compositional matrix adjust. Identities = 174/286 (60%), Positives = 217/286 (75%), Gaps = 1/286 (0%) Query: 1 MNRTVIVTDSTSDIPPTMAEALGIEVVPLTLMFGEEAFRDNVDMTPEQFYEXXXXXXXXX 60 MN+TVIVTDST+DIP +A+ I +VPL LMFGE+ F D V++TP +FY+ Sbjct: 1 MNKTVIVTDSTADIPADLAKQHNIHIVPLRLMFGEDTFLDGVEITPGEFYKKLVQSPQLP 60 Query: 61 XXXXXXXVEYMNVYQGIQERYPGCRILSFHISSGLSGTYQSAVLAKSMLEEKGESITVVD 120 +++ VY+ I E++PGC I+S HISSGLSGTYQSA+LA S++E + + ITV D Sbjct: 61 TTSQPSPADFVAVYESILEQHPGCSIVSIHISSGLSGTYQSALLATSLIEGEAD-ITVWD 119 Query: 121 SLSASYGFGFMVVEAARLAAEGHDPEEILAQAERLRQSRKLYFLVDTLEYLQKGGRIGKA 180 S SASYGFG VV AA+LA EG +IL+ E LR R+LYFLVDTLEYLQKGGRIGKA Sbjct: 120 SKSASYGFGLFVVHAAKLAQEGAAVSDILSSLEDLRSKRRLYFLVDTLEYLQKGGRIGKA 179 Query: 181 SAFLGTLLNIKPILSIDAEGIIYAVEKVRGRKKAVARMIELFKQDLPGVDKINVAVGHTA 240 SA LGTLLNIKPILSID EGII+ V+KVRGRKKA A++IELF+QDL GV I VAVGHTA Sbjct: 180 SAVLGTLLNIKPILSIDGEGIIFPVDKVRGRKKATAKIIELFQQDLSGVKNIKVAVGHTA 239 Query: 241 EPASGEEFLKELAGHFTLEEKVLTNVGPVVGSHVGNGTLAVFIWPA 286 +PA E+FL++L+ FT+EE V + +GPV+G+HVG GT+A +IWPA Sbjct: 240 DPALVEDFLQQLSAVFTIEETVFSEIGPVIGTHVGPGTIAAYIWPA 285 >C0ZFX9.1 C0ZFX9_BREBN Putative uncharacterized protein Length = 285 Score = 225 bits (573), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 119/280 (42%), Positives = 177/280 (63%), Gaps = 3/280 (1%) Query: 5 VIVTDSTSDIPPTMAEALGIEVVPLTLMFGEEAFRDNVDMTPEQFYEXXXXXXXXXXXXX 64 VI+TDS SDI + ++LGI VPL +MFG E + D V ++ +F++ Sbjct: 4 VILTDSASDIDAAVRQSLGIVAVPLKIMFGAETYVDAVTISSSEFFDKLKQSSVMPTTSQ 63 Query: 65 XXXVEYMNVYQGIQERY-PGCRILSFHISSGLSGTYQSAVLAKSMLEEKGESITVVDSLS 123 +E+ Y+ I E+Y +I++ +S LSGTYQSA++AKSML+E + ITV+DS Sbjct: 64 PSPLEFAEAYKAIHEKYGKDVQIIAILLSGSLSGTYQSAMIAKSMLDENID-ITVIDSRK 122 Query: 124 ASYGFGFMVVEAARLAAEGHDPEEILAQAERLRQSRKLYFLVDTLEYLQKGGRIGKASAF 183 AS+ G + VEAA+ A G + E+IL Q +R ++YF+VDTLE+LQKGGRIGKASA Sbjct: 123 ASFVHGMICVEAAKAAQAGKNKEQILDQIDRYLDEVQVYFIVDTLEFLQKGGRIGKASAV 182 Query: 184 LGTLLNIKPILSIDAEGIIYAVEKVRGRKKAVARMIELFKQDLPGVDKINVAVGHTAEPA 243 +G+LLNIKPIL++D G + A +KVRG KKA+ R+ E ++ G + + +AV H++ P Sbjct: 183 IGSLLNIKPILTLDPAGYVSAFDKVRGTKKALNRVFEALQEYAQG-EPVKIAVLHSSVPD 241 Query: 244 SGEEFLKELAGHFTLEEKVLTNVGPVVGSHVGNGTLAVFI 283 E L+ L F++ + L +GPV+G+H G G L + + Sbjct: 242 QAAELLERLKQEFSVTDSWLEEIGPVIGTHTGPGLLGIVM 281 >A8VRU8.1 A8VRU8_9BACI Fibronectin-binding A domain protein Length = 287 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 111/281 (39%), Positives = 171/281 (60%), Gaps = 2/281 (0%) Query: 1 MNRTVIVTDSTSDIPPTMAEALGIEVVPLTLMFGEEAFRDNVDMTPEQFYEXXXXXXXXX 60 M I+TDST+DIP ++ + L I VVPL + FG+E + D +D+ QFY+ Sbjct: 1 MGNVQIITDSTADIPESLTQELDIHVVPLKVHFGDETYEDGIDLDSAQFYQKLADSAVMP 60 Query: 61 XXXXXXXVEYMNVYQGIQERYPGCRILSFHISSGLSGTYQSAVLAKSMLEEKGESITVVD 120 ++ VY+GI P ++S H+S+ LSGT+QSA LA + ++ ITV+D Sbjct: 61 TTSQPTPYQFEEVYRGIHRTNPDSPLISIHLSANLSGTFQSAHLASQTIGDE-IPITVID 119 Query: 121 SLSASYGFGFMVVEAARLAAEGHDPEEILAQAERLRQSRKLYFLVDTLEYLQKGGRIGKA 180 S ASY G +VVE A+LA +G E ++ + L + + F+VDT+EYLQK GRIGKA Sbjct: 120 SKRASYAIGLIVVEVAKLAKQGASLEVCQSRIDELLKDTTVLFMVDTMEYLQKNGRIGKA 179 Query: 181 SAFLGTLLNIKPILSIDAEGIIYAVEKVRGRKKAVARMIELFKQDLPGVDKINVAVGHTA 240 SA +G+LL IKPILS++ +G ++ EK RG KKA+ R++ F + G D ++V + H Sbjct: 180 SALVGSLLKIKPILSLNDDGEVFPFEKARGNKKAIQRIVNEFHERY-GDDPVHVGISHAQ 238 Query: 241 EPASGEEFLKELAGHFTLEEKVLTNVGPVVGSHVGNGTLAV 281 ++ E ++ L F + + V+ ++GPV+G+HVG G L++ Sbjct: 239 AESTANELMERLKSEFNVSKSVIADIGPVIGTHVGPGALSI 279 >Q5WFL7.1 Q5WFL7_BACSK Putative uncharacterized protein Length = 286 Score = 215 bits (547), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 120/288 (41%), Positives = 174/288 (60%), Gaps = 7/288 (2%) Query: 1 MNRTVIVTDSTSDIPPTMAEALGIEVVPLTLMFGEEAFRDNVDMTPEQFYEXXXXXXXXX 60 M + IVTDST+DIP +AEA GI V+PL + FG E F D V +TP FYE Sbjct: 1 MEKVKIVTDSTADIPKEVAEAHGITVIPLNVHFGNEQFEDGVTLTPPAFYEKLQQASEMP 60 Query: 61 XXXXXXXVEYMNVYQGIQERYPGCR-ILSFHISSGLSGTYQSAVLAKSMLEEKGE-SITV 118 ++ +Y+ + G + I+S H+S+ +SGT Q+A++AK L KGE + V Sbjct: 61 KTSQPSPNQFEELYRSLAN--DGAKEIMSIHLSAKMSGTLQAALIAKESL--KGELDVHV 116 Query: 119 VDSLSASYGFGFMVVEAARLAAEGHDPEEILAQAERLRQSRKLYFLVDTLEYLQKGGRIG 178 DS ASY G +VVE A+LAA+G E + E L + +YFLVDTLE+L+K GRIG Sbjct: 117 YDSKRASYAIGIIVVEVAKLAAKGATLAECQKRFEELLELTTVYFLVDTLEFLEKNGRIG 176 Query: 179 KASAFLGTLLNIKPILSIDAEGIIYAVEKVRGRKKAVARMIELFKQDLPGVDKINVAVGH 238 KASA +GTLL +KP+LS+ +G +YA EKVRG+KKA+A+M+ L ++ G ++V + H Sbjct: 177 KASALIGTLLKMKPLLSLSEDGEVYAKEKVRGQKKAIAKMLALLEEAY-GNKNVHVGISH 235 Query: 239 TAEPASGEEFLKELAGHFTLEEKVLTNVGPVVGSHVGNGTLAVFIWPA 286 E E+ F ++ +T +G V+G+HVG GT+++ + A Sbjct: 236 AVNETLANELANEVKARFQVQSLTVTEIGAVIGAHVGPGTVSLSMTEA 283 >B2A2L4.1 B2A2L4_NATTJ DegV family protein Length = 279 Score = 203 bits (517), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 114/279 (40%), Positives = 168/279 (60%), Gaps = 10/279 (3%) Query: 6 IVTDSTSDIPPTMAEALGIEVVPLTLMFGEEAFRDNVDMTPEQFYEXXXXXXXXXXXXXX 65 IVTDST D+P + E I VVPL + F E ++D +D+ P++FY+ Sbjct: 5 IVTDSTCDLPKEIIEKYSINVVPLNVHFAENTYKDKIDLFPDEFYQKLVNSQEHPETSQP 64 Query: 66 XXVEYMNVYQGIQERYPGCRILSFHISSGLSGTYQSAVLAKSMLEEKGESITVVDSLSAS 125 +++N YQ I +ILS H+SS LSGT+QSA +AK ML + ITV+DS AS Sbjct: 65 SPGDFVNCYQEIAGEKD--QILSIHLSSELSGTFQSANIAKEMLPDL--DITVIDSKLAS 120 Query: 126 YGFGFMVVEAARLAAEGHDPEEILAQAERLRQSRKLYFLVDTLEYLQKGGRIGKASAFLG 185 G +V +AA +G EEI+ + + L++ LYF VDTLEYL++GGRIGKA A +G Sbjct: 121 LAMGLLVKKAAEAREQGASMEEIVDKIDVLKEKITLYFFVDTLEYLKRGGRIGKAQALVG 180 Query: 186 TLLNIKPILSIDAEGIIYAVEKVRGRKKAVARMIELFKQDLPGVDKINVAVG--HTAEPA 243 +LL+IKPIL+I+ EGII ++KVR +KKA+ ++I+L K+ +NV G ++ Sbjct: 181 SLLDIKPILTINNEGIIEPIDKVRTKKKAINKVIDLLKE---AKGDVNVTAGILYSGNEQ 237 Query: 244 SGEEFLK-ELAGHFTLEEKVLTNVGPVVGSHVGNGTLAV 281 + +K +++ F E+ V++ GPV+G HVG G V Sbjct: 238 ENLDMIKTKISEEFNCEDMVISPFGPVIGVHVGPGAFGV 276 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,533,613,141 Number of extensions: 56561428 Number of successful extensions: 151603 Number of sequences better than 1.0e-05: 1585 Number of HSP's gapped: 148015 Number of HSP's successfully gapped: 1586 Length of query: 286 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 152 Effective length of database: 1,798,280,193 Effective search space: 273338589336 Effective search space used: 273338589336 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)