BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0032.p (685 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KJ42.1 B3KJ42_9BACI ATP-dependent DNA helicase RecG 1136 0.0 B1DGZ5.1 B1DGZ5_9BACL ATP-dependent DNA helicase RecG 948 0.0 C0ZFX5.1 C0ZFX5_BREBN ATP-dependent DNA helicase EC=3.6.1.- 758 0.0 Q2B7A5.1 Q2B7A5_9BACI ATP-dependent DNA helicase RecG 749 0.0 A7GRI5.1 A7GRI5_BACCN ATP-dependent DNA helicase RecG 743 0.0 >B3KJ42.1 B3KJ42_9BACI ATP-dependent DNA helicase RecG Length = 683 Score = 1136 bits (2938), Expect = 0.0, Method: Compositional matrix adjust. Identities = 532/683 (77%), Positives = 607/683 (88%) Query: 3 MGISLDSIEVKQINGVSAQKQNELHAFGVFTVKDLLEYYPFRYDDFRPRSLSEIKHGDKA 62 M + LD I V+QINGVSA K+ ELHAFGV TVKDLLEYYPFRY+D+R RSLSE+K GDK Sbjct: 1 MSLKLDQISVRQINGVSALKEGELHAFGVSTVKDLLEYYPFRYEDYRLRSLSEVKDGDKI 60 Query: 63 TLVAKVIGIPVLQRFGGKSRLSCKMIAEPWMFTATWFNQHYVREQLTAQREIVITGKWDQ 122 T+ AK+ +PVLQR+G KSRL+CKM+AE WMFTATWFN+H++++QLTA REIV+TGKWDQ Sbjct: 61 TIQAKIASVPVLQRYGRKSRLTCKMLAENWMFTATWFNRHFLKDQLTAGREIVLTGKWDQ 120 Query: 123 KRNAITVTDYEFTDRGEGKIGTLQPVYSVGGKITQTWIRKIINQGLQQYGDLIPEILPHS 182 +R +TV++ EF D+G + GTLQPVYS+GGKITQ+WIRK + Q L+QYG++IPEILP S Sbjct: 121 RRMQLTVSESEFPDKGTFRSGTLQPVYSIGGKITQSWIRKTMGQALEQYGEMIPEILPQS 180 Query: 183 IIWKYDFLSRKRAIATIHRPEDTREGQQGRRRMVYEELFLFQLKVQAFRVLNRGRMDGVV 242 ++ KYD + RK AI TIH+P D+REGQ+GRRRMVYEELFLFQLK+QAFR LNRGRMDGVV Sbjct: 181 LLRKYDLMPRKAAIMTIHQPVDSREGQEGRRRMVYEELFLFQLKMQAFRALNRGRMDGVV 240 Query: 243 HTVDNATVRTFVRSLPFELTDAQKRVELEILQDMRSPYCMNRLLQGDVGSGKTVLAAIAL 302 HT DNAT+R FVRS PFELTDAQK+VELEIL DMRSPYCMNRLLQGDVGSGKT++AAIAL Sbjct: 241 HTADNATIREFVRSFPFELTDAQKKVELEILHDMRSPYCMNRLLQGDVGSGKTIVAAIAL 300 Query: 303 YATVKSGFQGALMVPTEILAEQHMRSLTKMFEPFGITVGLLTGSVTGRKRKDLLASLQMG 362 + TV+SGFQGALMVPTEILAEQHMRSL K+FEPFGITVGLLTGSVTG+KRKDLLASLQMG Sbjct: 301 FTTVRSGFQGALMVPTEILAEQHMRSLQKLFEPFGITVGLLTGSVTGKKRKDLLASLQMG 360 Query: 363 MLDIVVGTHALIQEDVFFRGLGMVVTDEQHRFGVNQRSILRRKGYNPDVLTMTATPIPRT 422 + DIVVGTHALIQ+DV+FR LG+VVTDEQHRFGVNQRS+LRRKGYNPDVLTMTATPIPRT Sbjct: 361 LTDIVVGTHALIQDDVYFRELGLVVTDEQHRFGVNQRSVLRRKGYNPDVLTMTATPIPRT 420 Query: 423 LAITVFGDMDVSTLSERPKGRVPIMTYWVKPDLMERVLKLVNREVDQGRQAYLICPLIEE 482 LAIT FGDMDVSTLSERPKGR+PI TYWVK +LM+RVL ++REV+QGRQAYLI PLIEE Sbjct: 421 LAITAFGDMDVSTLSERPKGRIPITTYWVKHELMDRVLGFISREVNQGRQAYLIAPLIEE 480 Query: 483 SEKLDVQNAIDLHIQMSQAFPHYKVGLLHGRMTPGEKDEVMRAFYNNEIQLLXXXXXXXX 542 S+KLDVQNAIDLH+QM QAFP Y VGLLHGRMTP EKDEVMR FY+NE+QLL Sbjct: 481 SDKLDVQNAIDLHVQMQQAFPAYSVGLLHGRMTPAEKDEVMRQFYSNEVQLLISTTVVEV 540 Query: 543 XXXXPNATLMIIMDADRFGLSQLHQLRGRVGRGQHASFCVLVADPKSEIGRERMTAMTDT 602 PNATLMIIMDADRFGLSQLHQLRGRVGRGQHAS+CVLVADPKSE+G+ERM MT+T Sbjct: 541 GVDVPNATLMIIMDADRFGLSQLHQLRGRVGRGQHASYCVLVADPKSEVGQERMQVMTET 600 Query: 603 DDGFEVSRRDLELRGPGDFFGTKQSGLPEFRLADMTADFEVLEQARDDAAELLKETDFWT 662 +DGFEVSRRDLELRGPGDFFGTKQSGLPEFRLADM ADF+V+E+AR DAA L+ ++ FWT Sbjct: 601 EDGFEVSRRDLELRGPGDFFGTKQSGLPEFRLADMVADFKVVEEARGDAAALVSDSSFWT 660 Query: 663 SADYAPLRTYLQNEQIFQGDIID 685 S +Y PLR +LQ E+IFQGDI+D Sbjct: 661 SPEYEPLRDFLQQEKIFQGDIMD 683 >B1DGZ5.1 B1DGZ5_9BACL ATP-dependent DNA helicase RecG Length = 684 Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust. Identities = 456/684 (66%), Positives = 547/684 (79%), Gaps = 3/684 (0%) Query: 5 ISLDSIEVKQINGVSAQKQNELHAFGVFTVKDLLEYYPFRYDDFRPRSLSEIKHGDKATL 64 ++L+ V+QI GVSA K+ ELHAFGV TV DLL+Y+PFRY+D+R R L+EIK G+K T+ Sbjct: 1 MTLEQYSVRQIKGVSAPKEEELHAFGVHTVADLLDYFPFRYEDYRIRELAEIKDGEKVTV 60 Query: 65 VAKVIGIPVLQRFG-GKSRLSCKMIAEPWMFTATWFNQHYVREQLTAQREIVITGKWDQK 123 + G +LQR+G KSRL+CK+ + + TA WFN+H+++ QLT REI++TGKW+Q+ Sbjct: 61 QGTIRGNGILQRYGKNKSRLTCKIEVDHMLVTAVWFNRHFLQGQLTPGREIMLTGKWEQQ 120 Query: 124 RNAITVTDYEFTDRGEG--KIGTLQPVYSVGGKITQTWIRKIINQGLQQYGDLIPEILPH 181 R +TV++ EF D+ G K GTLQPVYSVGG ITQ W+RK I Q L QYG +I E+LPH Sbjct: 121 RLQMTVSESEFADKSTGMVKSGTLQPVYSVGGGITQAWMRKTIKQALLQYGSMIEEVLPH 180 Query: 182 SIIWKYDFLSRKRAIATIHRPEDTREGQQGRRRMVYEELFLFQLKVQAFRVLNRGRMDGV 241 ++ ++ ++R+ A+ IH PE+ +EG + RRRMVYEELFLFQLK+QA+R L R R DG+ Sbjct: 181 ELVERHGLMARRDAVQRIHDPEEVKEGLEARRRMVYEELFLFQLKLQAYRSLTRKRGDGI 240 Query: 242 VHTVDNATVRTFVRSLPFELTDAQKRVELEILQDMRSPYCMNRLLQGDVGSGKTVLAAIA 301 VH V+ T+R F +LPFELTD QK+V EI+ DMR P MNRLLQGDVGSGKTV+AAIA Sbjct: 241 VHQVNGETIRNFAATLPFELTDGQKKVVNEIMSDMRQPAAMNRLLQGDVGSGKTVVAAIA 300 Query: 302 LYATVKSGFQGALMVPTEILAEQHMRSLTKMFEPFGITVGLLTGSVTGRKRKDLLASLQM 361 LY T+K+G QGALMVPTEILAEQH+RSL K+F GI V LLTGS+T +KR+D+LA LQM Sbjct: 301 LYCTIKAGHQGALMVPTEILAEQHLRSLQKLFADTGIEVALLTGSLTEKKRRDVLAGLQM 360 Query: 362 GMLDIVVGTHALIQEDVFFRGLGMVVTDEQHRFGVNQRSILRRKGYNPDVLTMTATPIPR 421 GM+DI+VGTHALIQ+DVFFR LG+VVTDEQHRFGVNQRSILRRKG NPDVLTMTATPIPR Sbjct: 361 GMIDILVGTHALIQDDVFFRSLGLVVTDEQHRFGVNQRSILRRKGMNPDVLTMTATPIPR 420 Query: 422 TLAITVFGDMDVSTLSERPKGRVPIMTYWVKPDLMERVLKLVNREVDQGRQAYLICPLIE 481 TLAIT FGDMDVST+ ERP GR PI TYWVK D+MERVL + REV +GRQAY+ICPLIE Sbjct: 421 TLAITAFGDMDVSTIKERPHGRKPIKTYWVKHDMMERVLGFIRREVGEGRQAYVICPLIE 480 Query: 482 ESEKLDVQNAIDLHIQMSQAFPHYKVGLLHGRMTPGEKDEVMRAFYNNEIQLLXXXXXXX 541 ES+KLDVQNAIDL++QM QAFP KVGLLHGR++ EKDEVMR F NE QLL Sbjct: 481 ESDKLDVQNAIDLYVQMQQAFPDLKVGLLHGRLSASEKDEVMRGFGANETQLLVATTVVE 540 Query: 542 XXXXXPNATLMIIMDADRFGLSQLHQLRGRVGRGQHASFCVLVADPKSEIGRERMTAMTD 601 PNATL+IIMDA+RFGLSQLHQLRGRVGRG H SFCVLVADPKSE GRERM MT+ Sbjct: 541 VGVDVPNATLIIIMDAERFGLSQLHQLRGRVGRGAHQSFCVLVADPKSENGRERMKVMTE 600 Query: 602 TDDGFEVSRRDLELRGPGDFFGTKQSGLPEFRLADMTADFEVLEQARDDAAELLKETDFW 661 T+DGFEVSRRDLELRGPGDFFGTKQSGLPEF++ADM A++E+LE ARDDAAEL DFW Sbjct: 601 TNDGFEVSRRDLELRGPGDFFGTKQSGLPEFKIADMAAEYEMLELARDDAAELTGRDDFW 660 Query: 662 TSADYAPLRTYLQNEQIFQGDIID 685 T+ + +R L +QIFQG+ +D Sbjct: 661 TNPLFERMRVQLLKDQIFQGEQLD 684 >C0ZFX5.1 C0ZFX5_BREBN ATP-dependent DNA helicase EC=3.6.1.- Length = 684 Score = 758 bits (1956), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/676 (56%), Positives = 492/676 (72%), Gaps = 2/676 (0%) Query: 12 VKQINGVSAQKQNELHAFGVFTVKDLLEYYPFRYDDFRPRSLSEIKHGDKATLVAKVIGI 71 V ++GV ++ G+ ++ DLLEY+P RY+D+R R L+E+K G++ TL V G Sbjct: 9 VSLLHGVGEERAKAFAGLGINSIGDLLEYFPSRYEDYRVRDLTEVKDGERVTLAGTVYGE 68 Query: 72 PVLQRFGG-KSRLSCKMIAEPWMFTATWFNQHYVREQLTAQREIVITGKWDQKRNAITVT 130 P ++ +G KSRLS K++ + + TA WFNQ +V+ +L+ +EI++TGKWD+ + ITV+ Sbjct: 69 PSVRFYGKRKSRLSVKVVMDRVVVTAVWFNQTFVKSRLSPGKEILVTGKWDKHKLQITVS 128 Query: 131 DYEFTDRGEG-KIGTLQPVYSVGGKITQTWIRKIINQGLQQYGDLIPEILPHSIIWKYDF 189 + D K G L PVY +GG +T T +RK I L+QYG IPEILP I+ +Y Sbjct: 129 EMTEVDSERATKRGELAPVYPLGGDVTHTLLRKTIQLALRQYGKEIPEILPADIVERYRL 188 Query: 190 LSRKRAIATIHRPEDTREGQQGRRRMVYEELFLFQLKVQAFRVLNRGRMDGVVHTVDNAT 249 + R A +IH PE+ +G+Q RRR+++EELFLFQLK+Q R +NR + +GV + Sbjct: 189 MPRIHAFHSIHFPENAEDGRQARRRIMFEELFLFQLKMQTLRKINRQQTEGVALAIPMEE 248 Query: 250 VRTFVRSLPFELTDAQKRVELEILQDMRSPYCMNRLLQGDVGSGKTVLAAIALYATVKSG 309 VR FV+ LPF LTDAQKRV EIL DMR+P+ MNRLLQGDVGSGKTV+AAIAL A VK+G Sbjct: 249 VREFVKGLPFPLTDAQKRVVKEILDDMRAPHAMNRLLQGDVGSGKTVVAAIALIAAVKAG 308 Query: 310 FQGALMVPTEILAEQHMRSLTKMFEPFGITVGLLTGSVTGRKRKDLLASLQMGMLDIVVG 369 +QGALMVPTEILAEQH++SLTK+ +GI V LL+GS+T ++R++++ SLQMG++D+VVG Sbjct: 309 YQGALMVPTEILAEQHVQSLTKLLSDYGIQVALLSGSLTAKRRREVIGSLQMGLIDVVVG 368 Query: 370 THALIQEDVFFRGLGMVVTDEQHRFGVNQRSILRRKGYNPDVLTMTATPIPRTLAITVFG 429 THALIQEDVFF LG+V+TDEQHRFGV QR ILR KG +PDVL MTATPIPRTLAIT FG Sbjct: 369 THALIQEDVFFSRLGLVITDEQHRFGVEQRRILRNKGLSPDVLFMTATPIPRTLAITAFG 428 Query: 430 DMDVSTLSERPKGRVPIMTYWVKPDLMERVLKLVNREVDQGRQAYLICPLIEESEKLDVQ 489 DMDVST+ + P GR PI T W K D VL+ + E+ +GRQAY+ICPLIEESEKLDVQ Sbjct: 429 DMDVSTIDQMPAGRKPIETTWKKHDQFPAVLEQMRDELRKGRQAYVICPLIEESEKLDVQ 488 Query: 490 NAIDLHIQMSQAFPHYKVGLLHGRMTPGEKDEVMRAFYNNEIQLLXXXXXXXXXXXXPNA 549 NAID+H Q++ FP + VGL+HGR+ EKD VM+AF E +L PNA Sbjct: 489 NAIDVHAQLTHIFPEFGVGLMHGRLPAKEKDAVMQAFLAAEHAVLVSTTVVEVGVNVPNA 548 Query: 550 TLMIIMDADRFGLSQLHQLRGRVGRGQHASFCVLVADPKSEIGRERMTAMTDTDDGFEVS 609 T M+I DA+RFGL+QLHQLRGRVGRG S+CVL+ADPKSEIG+ERM M +T DGFE+S Sbjct: 549 TYMVIYDAERFGLAQLHQLRGRVGRGSEQSYCVLIADPKSEIGKERMRVMCETTDGFELS 608 Query: 610 RRDLELRGPGDFFGTKQSGLPEFRLADMTADFEVLEQARDDAAELLKETDFWTSADYAPL 669 +RDLELRGPGDFFGTKQSGLPEF++AD+ +D++ LE AR + +L+ E FW Y L Sbjct: 609 QRDLELRGPGDFFGTKQSGLPEFKVADLLSDYKALEVARQETVKLVAEDSFWRDEKYHWL 668 Query: 670 RTYLQNEQIFQGDIID 685 R YL+NE + G + D Sbjct: 669 RDYLKNEGVLDGVVFD 684 >Q2B7A5.1 Q2B7A5_9BACI ATP-dependent DNA helicase RecG Length = 679 Score = 749 bits (1933), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/676 (53%), Positives = 478/676 (70%), Gaps = 4/676 (0%) Query: 12 VKQINGVSAQKQNELHAFGVFTVKDLLEYYPFRYDDFRPRSLSEIKHGDKATLVAKVIGI 71 V I G+ A+ L +FTV DLLE++PFRY+D+R + LSE+KH ++ T+ K+ Sbjct: 6 VTSIKGIGAETAEALADMNIFTVGDLLEHFPFRYEDYRLKDLSEVKHEERVTVEGKIHSE 65 Query: 72 PVLQRFGGK-SRLSCKMIAEPWMFTATWFNQHYVREQLTAQREIVITGKWDQKRNAITVT 130 P+L +G K SRL+ +++ ++ A +FNQ Y++++ + ITGKWDQ R I+ + Sbjct: 66 PLLTYYGRKRSRLTIRVLVGRYLIQAVFFNQPYLKKKFAINDSVTITGKWDQHRQMISAS 125 Query: 131 DYEFTDRGEGKIGTLQPVYSVGGKITQTWIRKIINQGLQQYGDLIPEILPHSIIWKYDFL 190 + + K +PVY+V G IT IR+ I QY D I E LP ++ +Y L Sbjct: 126 EIHLGENAASK--DFEPVYAVKGSITVKGIRRFIGMAFSQYADSIAETLPERLLEQYKLL 183 Query: 191 SRKRAIATIHRPEDTREGQQGRRRMVYEELFLFQLKVQAFRVLNRGRMDGVVHTVDNATV 250 +RK A+ +H P + +Q RRR VYEE FQLK+QA R R + G+V T D + Sbjct: 184 NRKDALRAMHFPGGPEDLKQARRRFVYEEFLYFQLKMQALRKFEREQSKGIVQTYDLKKL 243 Query: 251 RTFVRSLPFELTDAQKRVELEILQDMRSPYCMNRLLQGDVGSGKTVLAAIALYATVKSGF 310 + F+ SLPF LT AQKRV EIL DM+SPY MNRLLQGDVGSGKTV+AAI LYA +G+ Sbjct: 244 KEFIGSLPFPLTGAQKRVVNEILSDMKSPYRMNRLLQGDVGSGKTVVAAIGLYAAATAGY 303 Query: 311 QGALMVPTEILAEQHMRSLTKMFEPFGITVGLLTGSVTGRKRKDLLASLQMGMLDIVVGT 370 QGALMVPTEILAEQH +SL ++ EP G++ LLT SV G+KRKD+LA L G +D+++GT Sbjct: 304 QGALMVPTEILAEQHEKSLKELLEPQGLSCELLTSSVKGKKRKDILARLSEGEIDVLIGT 363 Query: 371 HALIQEDVFFRGLGMVVTDEQHRFGVNQRSILRRKGYNPDVLTMTATPIPRTLAITVFGD 430 HALIQ++V F+ LG V+TDEQHRFGV QR +LR KG +PDVL MTATPIPRTLAITVFG+ Sbjct: 364 HALIQQEVEFKRLGFVITDEQHRFGVEQRRVLREKGESPDVLFMTATPIPRTLAITVFGE 423 Query: 431 MDVSTLSERPKGRVPIMTYWVKPDLMERVLKLVNREVDQGRQAYLICPLIEESEKLDVQN 490 MDVS + E P GR I TYW K ++++R+L+ + +E+ +GRQAY+ICPLIEES+KLDVQN Sbjct: 424 MDVSIIDEMPAGRKTIETYWAKQEMLDRILQFMEKELSKGRQAYVICPLIEESDKLDVQN 483 Query: 491 AIDLHIQMSQAFP-HYKVGLLHGRMTPGEKDEVMRAFYNNEIQLLXXXXXXXXXXXXPNA 549 AID+H ++ + YKVGL+HGR+ P EKD VM+ F NEIQ+L PNA Sbjct: 484 AIDVHSNLTFYYQDRYKVGLMHGRLHPEEKDGVMKEFSRNEIQILVSTTVVEVGVNVPNA 543 Query: 550 TLMIIMDADRFGLSQLHQLRGRVGRGQHASFCVLVADPKSEIGRERMTAMTDTDDGFEVS 609 T+M+I DA+RFGLSQLHQLRGRVGRG S+C+L+ADPKSE+G+ERM M++T+DGF +S Sbjct: 544 TIMVIYDAERFGLSQLHQLRGRVGRGSEQSYCILLADPKSEVGKERMKIMSETNDGFVLS 603 Query: 610 RRDLELRGPGDFFGTKQSGLPEFRLADMTADFEVLEQARDDAAELLKETDFWTSADYAPL 669 +DLELRGPGDFFG KQSG+PEF++ADM D+ LE AR+DA++L++ + FW +Y L Sbjct: 604 EKDLELRGPGDFFGRKQSGMPEFKVADMVHDYRALETARNDASKLIQSSIFWEGPEYGML 663 Query: 670 RTYLQNEQIFQGDIID 685 R YL+N +F G+ +D Sbjct: 664 REYLKNTGVFHGEKLD 679 >A7GRI5.1 A7GRI5_BACCN ATP-dependent DNA helicase RecG Length = 682 Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/678 (52%), Positives = 483/678 (71%), Gaps = 4/678 (0%) Query: 10 IEVKQINGVSAQKQNELHAFGVFTVKDLLEYYPFRYDDFRPRSLSEIKHGDKATLVAKVI 69 + V + G+ + LH G++TV LLE++P+RY+D+ + L+++KH ++ T+ K+ Sbjct: 7 VPVTDVKGIGTETSELLHEMGIYTVAHLLEHFPYRYEDYAMKDLADVKHEERVTVEGKIH 66 Query: 70 GIPVLQRFGGK-SRLSCKMIAEPWMFTATWFNQHYVREQLTAQREIVITGKWDQKRNAIT 128 P+LQ +G K SRL+ +++ ++ TA FN+ Y +++L + ITGKWDQ R I+ Sbjct: 67 SAPILQYYGKKKSRLTVRVLVGRYLITAVCFNRPYYKQKLKLDEVVTITGKWDQHRQTIS 126 Query: 129 VTDYEFTDRGEGKIGTLQPVYSVGGKITQTWIRKIINQGLQQYGDLIPEILPHSIIWKYD 188 V++ F + ++PVYSV GK+T +R+ I Q L++YG+ I E+LP+ ++ +Y Sbjct: 127 VSELHFGPFVRKQ--EIEPVYSVKGKLTVKQMRRFIAQALKEYGNAIVELLPNGLLGRYK 184 Query: 189 FLSRKRAIATIHRPEDTREGQQGRRRMVYEELFLFQLKVQAFRVLNRGRMDGVVHTVDNA 248 L R A+ +H P + + +Q RRR VYEE FLFQLK+QA R + R G V Sbjct: 185 LLPRYEALRALHFPVNQEDLKQARRRFVYEEFFLFQLKMQALRKIERENSQGTKKDVSVE 244 Query: 249 TVRTFVRSLPFELTDAQKRVELEILQDMRSPYCMNRLLQGDVGSGKTVLAAIALYATVKS 308 ++ F+ +LPF LT AQ+RV EIL+DMRSPY MNRLLQGDVGSGKTV+AAIALYA + Sbjct: 245 ELKEFIDALPFPLTGAQQRVIAEILKDMRSPYRMNRLLQGDVGSGKTVVAAIALYAAKLA 304 Query: 309 GFQGALMVPTEILAEQHMRSLTKMFEPFGITVGLLTGSVTGRKRKDLLASLQMGMLDIVV 368 +QGALMVPTEILAEQH +SLT++F F ++V LLT SV G +R+++LA L+ G +DI+V Sbjct: 305 HYQGALMVPTEILAEQHFQSLTEIFSHFHLSVELLTSSVKGARRREILAKLEQGEIDILV 364 Query: 369 GTHALIQEDVFFRGLGMVVTDEQHRFGVNQRSILRRKGYNPDVLTMTATPIPRTLAITVF 428 GTHALIQ++V F LG+V+TDEQHRFGV QR +LR KG +PDVL MTATPIPRTLAIT F Sbjct: 365 GTHALIQDEVIFHKLGLVITDEQHRFGVAQRRVLREKGESPDVLFMTATPIPRTLAITAF 424 Query: 429 GDMDVSTLSERPKGRVPIMTYWVKPDLMERVLKLVNREVDQGRQAYLICPLIEESEKLDV 488 G+MDVS + E P GR I TYW K D+++RVL V +EV +GRQAY+ICPLIEESEKLDV Sbjct: 425 GEMDVSIIDEMPAGRKVIETYWTKHDMLDRVLNFVAKEVKKGRQAYVICPLIEESEKLDV 484 Query: 489 QNAIDLHIQMSQAFP-HYKVGLLHGRMTPGEKDEVMRAFYNNEIQLLXXXXXXXXXXXXP 547 QNAIDLH ++ + ++VGL+HGR++ EK+EVM F N++Q+L P Sbjct: 485 QNAIDLHSMLTHHYQGEFQVGLMHGRLSAQEKEEVMEQFSENKVQILVSTTVVEVGVNVP 544 Query: 548 NATLMIIMDADRFGLSQLHQLRGRVGRGQHASFCVLVADPKSEIGRERMTAMTDTDDGFE 607 NAT+M+I DA+RFGLSQLHQLRGRVGRG S+C+L+ADPKSE G+ERM MT+T+DGF Sbjct: 545 NATVMVIYDAERFGLSQLHQLRGRVGRGSEQSYCLLIADPKSETGQERMRIMTETNDGFV 604 Query: 608 VSRRDLELRGPGDFFGTKQSGLPEFRLADMTADFEVLEQARDDAAELLKETDFWTSADYA 667 +S +DLELRGPGDFFG+KQSGLPEF++AD+ D+ LE AR DAA L++ FW + Y Sbjct: 605 LSEKDLELRGPGDFFGSKQSGLPEFKVADIVHDYRALETARQDAALLVESEAFWHNEQYV 664 Query: 668 PLRTYLQNEQIFQGDIID 685 LR YL+ +FQG+ +D Sbjct: 665 ALRMYLEETGVFQGEKLD 682 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,863,965,481 Number of extensions: 159979143 Number of successful extensions: 368822 Number of sequences better than 1.0e-05: 3046 Number of HSP's gapped: 360069 Number of HSP's successfully gapped: 3109 Length of query: 685 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 542 Effective length of database: 1,713,491,058 Effective search space: 928712153436 Effective search space used: 928712153436 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 135 (56.6 bits)