BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0490.0031.p
         (98 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KJ43.1 B3KJ43_9BACI Putative uncharacterized protein                154   2e-36
B1DGZ4.1 B1DGZ4_9BACL Putative uncharacterized protein                125   1e-27

>B3KJ43.1 B3KJ43_9BACI Putative uncharacterized protein
          Length = 95

 Score =  154 bits (390), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 68/95 (71%), Positives = 87/95 (91%)

Query: 4  VGYQQFGISPQLVDRIKLKMKNPAVKERVKNLINGISKQELQNTSVVHRLVRKASAILGE 63
          +GYQQ+GISPQLV+RIKLKMKNPA+KER+K L  G++K +LQN++ VH+L+R AS IL E
Sbjct: 1  MGYQQYGISPQLVERIKLKMKNPAIKERIKGLTQGLTKADLQNSAKVHQLIRTASGILNE 60

Query: 64 KLTSAQEEQIVKFVIAQKIDPNNTFHLIRLWGMFR 98
          KL+SAQE+Q+V+FV+AQ+IDPNNTFHLI+LWGMFR
Sbjct: 61 KLSSAQEQQMVQFVLAQRIDPNNTFHLIKLWGMFR 95


>B1DGZ4.1 B1DGZ4_9BACL Putative uncharacterized protein
          Length = 101

 Score =  125 bits (314), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 55/95 (57%), Positives = 76/95 (80%)

Query: 4   VGYQQFGISPQLVDRIKLKMKNPAVKERVKNLINGISKQELQNTSVVHRLVRKASAILGE 63
           V YQ++GI PQLV+R+K K+KNP VK+R++ L+  ++K +LQ+   V +LV+ A++IL E
Sbjct: 7   VSYQKYGIRPQLVERVKFKLKNPVVKDRMRLLLGNVTKYDLQDRVKVRKLVKSATSILQE 66

Query: 64  KLTSAQEEQIVKFVIAQKIDPNNTFHLIRLWGMFR 98
            LT  QEEQI+ FV+ QKIDPNNTFHL++LWGMFR
Sbjct: 67  PLTDIQEEQIIDFVLGQKIDPNNTFHLLKLWGMFR 101


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.136    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 504,371,809
Number of extensions: 15074984
Number of successful extensions: 60186
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 60186
Number of HSP's successfully gapped: 2
Length of query: 98
Length of database: 3,060,696,203
Length adjustment: 67
Effective length of query: 31
Effective length of database: 2,429,488,198
Effective search space: 75314134138
Effective search space used: 75314134138
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)