BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0490.0030.p
         (53 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFH4.1 B3KFH4_9BACI Regulatory protein TetR                          99   1e-19

>B3KFH4.1 B3KFH4_9BACI Regulatory protein TetR
          Length = 219

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 46/53 (86%), Positives = 51/53 (96%)

Query: 1   MQFNLVMFFREFDIKDTKLQHKISKYFADFMGHGLLEDHKYSEIVSDFKKAKE 53
           MQFNLVMFFREFDIKD+KLQHKISKYFADFM HGLLEDHKY+E+++D KKAKE
Sbjct: 167 MQFNLVMFFREFDIKDSKLQHKISKYFADFMSHGLLEDHKYAEMLNDLKKAKE 219


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.327    0.141    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 292,796,809
Number of extensions: 7674076
Number of successful extensions: 24579
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 24579
Number of HSP's successfully gapped: 1
Length of query: 53
Length of database: 3,060,696,203
Length adjustment: 26
Effective length of query: 27
Effective length of database: 2,815,749,813
Effective search space: 76025244951
Effective search space used: 76025244951
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 125 (52.8 bits)