BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0027.p (272 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0ZCW2.1 C0ZCW2_BREBN Conserved hypothetical membrane protein 110 1e-22 B9DPY0.1 B9DPY0_STACT Putative uncharacterized protein 108 7e-22 C0Z5W4.1 C0Z5W4_BREBN Conserved hypothetical membrane protein 107 1e-21 A6M0D1.1 A6M0D1_CLOB8 Putative uncharacterized protein 107 2e-21 B1DH34.1 B1DH34_9BACL Putative uncharacterized protein 105 3e-21 >C0ZCW2.1 C0ZCW2_BREBN Conserved hypothetical membrane protein Length = 294 Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/237 (28%), Positives = 109/237 (45%), Gaps = 7/237 (2%) Query: 22 FLMPHQLVPGGIAGLSALFAHTTEMRXXXXXXXXXXXXXXISRRQIHLRFALYVMLGLVC 81 FL+P+ ++ GG+ G+S + + T + +QI FA+ + G+V Sbjct: 40 FLVPNNIIDGGVTGVSIMVSKLTGGPLGLFLFLLNLPFLLVGYKQIGKTFAISTLFGVVV 99 Query: 82 LTAGSLALHRFPSLTGEPLTXXXXXXXXXXXXXXXXXXXXXXXXXAGDPGYALLSQGPAK 141 ++ G+ LH PSLT + L + + P Sbjct: 100 MSLGTSYLHHVPSLTDDLLLSAVFGGIIIGIGVGLVIRAGGSLDGTEIVAILMTRKSPFS 159 Query: 142 SAEYIIMVFNCTILLCGGALFGWDQAMYSILAYLLAFEAVRICIRDLSRTRAVWITSSRP 201 E ++M FN IL G +FGWD+AMYS++AY +A++ + I + L ++R+VWI S P Sbjct: 160 VGE-MVMFFNIFILGSAGFIFGWDRAMYSLIAYYIAYKMIDITMVGLEQSRSVWIISDYP 218 Query: 202 EEIRLALHRKLAREAKLIRASGAKGQPG----TLFCIASKLEEEELATIVRTCDQDS 254 EI AL +L R + G G G +FC+ ++LEE +L +IV D + Sbjct: 219 AEIGDALTARLGRGITYLNGEG--GYSGDVKKVIFCVITRLEEAKLKSIVEEIDSSA 273 >B9DPY0.1 B9DPY0_STACT Putative uncharacterized protein Length = 297 Score = 108 bits (269), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 65/235 (27%), Positives = 110/235 (46%), Gaps = 3/235 (1%) Query: 22 FLMPHQLVPGGIAGLSALFAHTTEMRXXXXXXXXXXXXXXISRRQIHLRFALYVMLGLVC 81 FL+P++L+ GGI G+S + +H T + +QI FA+ + + Sbjct: 43 FLVPNKLLDGGIVGVSIILSHLTGWSLGVFIFLLNLPFFFLGYKQIGKTFAISTLYAITV 102 Query: 82 LTAGSLALHRFPSLTGEPLTXXXXXXXXXXXXXXXXXXXXXXXXXAGDPGYALLSQGPAK 141 L+ G+ LH P++ EPL L ++ P Sbjct: 103 LSVGTTLLHPVPAVVKEPLLITIFGGAIVGIGVGLVIRAGGTMDGTEIMSILLNNKVPFS 162 Query: 142 SAEYIIMVFNCTILLCGGALFGWDQAMYSILAYLLAFEAVRICIRDLSRTRAVWITSSRP 201 E I+M+FN I G +F W+ AMYS +AY +AF+ + + + L ++AVWI S Sbjct: 163 VGE-IVMIFNFFIFAVAGFIFTWESAMYSFVAYFIAFKMIDLILVGLDESKAVWIISDDY 221 Query: 202 EEIRLALHRKLAREAKLIRASGA-KGQP-GTLFCIASKLEEEELATIVRTCDQDS 254 +EI A++ +L R + A GA G+P +FC+ +++EE +L +V D ++ Sbjct: 222 KEIGEAINDRLGRGVTYLNAEGAYTGEPRKVVFCVITRVEEAKLKEVVMKIDPNA 276 >C0Z5W4.1 C0Z5W4_BREBN Conserved hypothetical membrane protein Length = 276 Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 3/235 (1%) Query: 22 FLMPHQLVPGGIAGLSALFAHTTEMRXXXXXXXXXXXXXXISRRQIHLRFALYVMLGLVC 81 FL+P+ ++ GGI G+S + +H + + I +QI FAL + G+ Sbjct: 22 FLVPNNIIDGGIVGISIITSHLSGIPLGVFLFVLNLPFLIIGYKQIGKTFALSTLFGVTI 81 Query: 82 LTAGSLALHRFPSLTGEPLTXXXXXXXXXXXXXXXXXXXXXXXXXAGDPGYALLSQGPAK 141 ++ G+ LH LT +PL L + P Sbjct: 82 MSVGTTFLHEVKGLTDDPLLAAVFGGILLGIGVGLVLRYGGSLDGTEIVAVLLNKKSPFS 141 Query: 142 SAEYIIMVFNCTILLCGGALFGWDQAMYSILAYLLAFEAVRICIRDLSRTRAVWITSSRP 201 E I+M N IL G +FGWD+AMYS++AY +AF+ + + I ++AVWI S Sbjct: 142 VGE-IVMFMNLFILSSAGFVFGWDRAMYSLIAYYIAFKMIDLTIEGFQESKAVWIISDNH 200 Query: 202 EEIRLALHRKLAREAKLIRASGA--KGQPGTLFCIASKLEEEELATIVRTCDQDS 254 +++ A+ +L R + G +FCI ++LEE +L IV D ++ Sbjct: 201 KDLGDAIVARLGRGVTYLNGEGGYTGDDKKVIFCIITRLEEAKLKLIVEEVDPNA 255 >A6M0D1.1 A6M0D1_CLOB8 Putative uncharacterized protein Length = 285 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 66/237 (27%), Positives = 112/237 (47%), Gaps = 3/237 (1%) Query: 22 FLMPHQLVPGGIAGLSALFAHTTEMRXXXXXXXXXXXXXXISRRQIHLRFALYVMLGLVC 81 FL+P+ ++ GG+ G+S + ++ T+++ I RQI FA+ + ++C Sbjct: 32 FLIPNNIIDGGMTGISIMASYLTKVQLGVFTFLFNLPFVIIGYRQIGKTFAISTIFSVIC 91 Query: 82 LTAGSLALHRFPSLTGEPLTXXXXXXXXXXXXXXXXXXXXXXXXXAGDPGYALLSQGPAK 141 L+ LH P +T + L + +L + A Sbjct: 92 LSVVVTLLHPVPGITQDVL-LATIFGGIIIGVGVGLIIRNGGSLDGTEIVAIILEKRTAF 150 Query: 142 SAEYIIMVFNCTILLCGGALFGWDQAMYSILAYLLAFEAVRICIRDLSRTRAVWITSSRP 201 S I+M FN IL G LFGWD+AMYS++AY +AF+ + I + L+ ++AV I S + Sbjct: 151 SIGEIVMFFNLFILGTSGFLFGWDRAMYSLIAYFIAFKTIDITVEGLNESKAVIIVSDKN 210 Query: 202 EEIRLALHRKLAREAKLIRASGAKG--QPGTLFCIASKLEEEELATIVRTCDQDSQI 256 EI A+ +L R L+ GA + ++ + S+LE +L IV D+D+ + Sbjct: 211 NEISEAIMARLGRGITLLDGKGAYSGTETNVIYVVLSRLEIAKLKNIVHGFDEDALV 267 >B1DH34.1 B1DH34_9BACL Putative uncharacterized protein Length = 290 Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 3/232 (1%) Query: 22 FLMPHQLVPGGIAGLSALFAHTTEMRXXXXXXXXXXXXXXISRRQIHLRFALYVMLGLVC 81 FL+P+ ++ GGI G+S + +H T + + +QI FA+ + G+ Sbjct: 36 FLVPNHIIDGGIVGISIIVSHLTGLPLGIFLFLLNLPFLVLGYKQIGKTFAMSTLYGVSV 95 Query: 82 LTAGSLALHRFPSLTGEPLTXXXXXXXXXXXXXXXXXXXXXXXXXAGDPGYALLSQGPAK 141 ++ G+ LH P LT E + P Sbjct: 96 MSLGTFLLHPVPPLTEEYFLASIFGGVILGIGVGIVIRFGGSLDGTEIIAILFNKRLPFS 155 Query: 142 SAEYIIMVFNCTILLCGGALFGWDQAMYSILAYLLAFEAVRICIRDLSRTRAVWITSSRP 201 E I+M FN IL G +FGWD+AMYS++AY +A++ + I + ++AVWI S Sbjct: 156 VGE-IVMFFNLFILGSAGFVFGWDRAMYSLVAYYIAYKMIDITMEGFEESKAVWIISDEA 214 Query: 202 EEIRLALHRKLAREAKLIRASG--AKGQPGTLFCIASKLEEEELATIVRTCD 251 +EI A+ +L R + G + GQ +FC+ ++LEE ++ +IV D Sbjct: 215 KEIGSAIMDRLGRGVTYMHGEGGFSGGQKRIIFCVITRLEEAKMKSIVNDID 266 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.139 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,085,324,081 Number of extensions: 31746375 Number of successful extensions: 95553 Number of sequences better than 1.0e-05: 133 Number of HSP's gapped: 95673 Number of HSP's successfully gapped: 133 Length of query: 272 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 139 Effective length of database: 1,807,701,208 Effective search space: 251270467912 Effective search space used: 251270467912 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)