BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0025.p (164 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DA65.1 B1DA65_9BACL TrkA-C domain protein 222 9e-57 B3KFS0.1 B3KFS0_9BACI TrkA-C domain protein 211 2e-53 C0Z7J7.1 C0Z7J7_BREBN Potassium-efflux system protein YhaT 203 5e-51 B3K9E7.1 B3K9E7_9BACI TrkA-C domain protein 201 1e-50 A4J4P4.1 A4J4P4_DESRM TrkA-C domain protein 180 3e-44 >B1DA65.1 B1DA65_9BACL TrkA-C domain protein Length = 164 Score = 222 bits (565), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 104/163 (63%), Positives = 124/163 (76%) Query: 1 MNYRESDLPGIGKKFVMQTRSGDKLVVIVHDDGRRELYHFEYDDPDQSISMITLDDDEAR 60 MN RE DLPGIGKKF M TRSGD+LV+IVH+DGRRE YHF +++P+ SISMITLDDDEAR Sbjct: 1 MNIREIDLPGIGKKFQMNTRSGDQLVIIVHNDGRRECYHFHHENPESSISMITLDDDEAR 60 Query: 61 YISAIVGGITYKPKALESIEVALDDLIIEWYRLEQDFKCIGHSIGELDXXXXXXXXXXXX 120 +A++GG+TYKPK LE+IEVALD+LIIEWY+LE + CIG +IGEL+ Sbjct: 61 MAAAMIGGMTYKPKMLETIEVALDELIIEWYKLESHYACIGKTIGELNIRKNTGTTVIAL 120 Query: 121 XEKNHQKHINPGPEVLLPAECTVVAAGERHQHKQFKHILRNGC 163 NH K INPGPEV+L A+ T+V AGER QHK K IL NGC Sbjct: 121 LAANHAKQINPGPEVVLAADHTIVVAGERAQHKVLKKILMNGC 163 >B3KFS0.1 B3KFS0_9BACI TrkA-C domain protein Length = 163 Score = 211 bits (536), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 101/164 (61%), Positives = 126/164 (76%), Gaps = 1/164 (0%) Query: 1 MNYRESDLPGIGKKFVMQTRSGDKLVVIVHDDGRRELYHFEYDDPDQSISMITLDDDEAR 60 M+ RE+DLPGIGKKFV+ TR GDKLV+I+HDDGRRE+YH+EYDDPD+SISMI+LDDDEAR Sbjct: 1 MHVRETDLPGIGKKFVIDTRGGDKLVIIIHDDGRREMYHYEYDDPDESISMISLDDDEAR 60 Query: 61 YISAIVGGITYKPKALESIEVALDDLIIEWYRLEQDFKCIGHSIGELDXXXXXXXXXXXX 120 I+AIVGG+TYKPKALE+I++ALD+LIIEWYR+E + G SIG+L Sbjct: 61 QIAAIVGGLTYKPKALETIDMALDELIIEWYRIEPHYYGAGKSIGDLGVRQASGATIIAR 120 Query: 121 XEKNHQKHINPGPEVLLPAECTVVAAGERHQHKQFKHILRNGCG 164 +KN K INPGP+V++ + T+V GER Q + FK IL NG G Sbjct: 121 VDKN-SKQINPGPDVIITPDSTLVVVGERQQQRLFKQILMNGRG 163 >C0Z7J7.1 C0Z7J7_BREBN Potassium-efflux system protein YhaT Length = 165 Score = 203 bits (516), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 94/162 (58%), Positives = 122/162 (75%) Query: 1 MNYRESDLPGIGKKFVMQTRSGDKLVVIVHDDGRRELYHFEYDDPDQSISMITLDDDEAR 60 + RESDLPGIG+K+ ++TRSGDKLV+++HDDGRRE+YHF+ DD D+++SM+TLDDDEAR Sbjct: 2 FSIRESDLPGIGRKYQVETRSGDKLVIVIHDDGRREMYHFDRDDIDETLSMVTLDDDEAR 61 Query: 61 YISAIVGGITYKPKALESIEVALDDLIIEWYRLEQDFKCIGHSIGELDXXXXXXXXXXXX 120 I+AIVGG+TYKP ALE++EVALD L+IEWY++E + IG +IGEL+ Sbjct: 62 QIAAIVGGLTYKPSALETVEVALDKLMIEWYKIESNAPAIGKTIGELNIRQETGATIIAV 121 Query: 121 XEKNHQKHINPGPEVLLPAECTVVAAGERHQHKQFKHILRNG 162 EK+H + INPGPE +L T+V AGER Q K K IL NG Sbjct: 122 IEKDHNQTINPGPEYVLCTGSTLVVAGERKQVKALKTILSNG 163 >B3K9E7.1 B3K9E7_9BACI TrkA-C domain protein Length = 162 Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 99/159 (62%), Positives = 119/159 (74%), Gaps = 1/159 (0%) Query: 4 RESDLPGIGKKFVMQTRSGDKLVVIVHDDGRRELYHFEYDDPDQSISMITLDDDEARYIS 63 RESDLPGIGKKF++Q RSGDKLVV++HDDGRRELYHFE DDP+++IS ITL+DDEAR I+ Sbjct: 5 RESDLPGIGKKFLIQARSGDKLVVVIHDDGRRELYHFEDDDPEETISQITLEDDEARQIA 64 Query: 64 AIVGGITYKPKALESIEVALDDLIIEWYRLEQDFKCIGHSIGELDXXXXXXXXXXXXXEK 123 I+GG+TYKPKALE+IEV L+DLIIEW R+E +KC+G SI L K Sbjct: 65 GIIGGMTYKPKALETIEVTLEDLIIEWARIEPHYKCVGQSIAGLQVRQRTGANVLAIVNK 124 Query: 124 NHQKHINPGPEVLLPAECTVVAAGERHQHKQFKHILRNG 162 QK INPGP+ +L A T+V AGER Q KQ K +L NG Sbjct: 125 KEQK-INPGPDDILTAGSTLVLAGERKQIKQLKELLVNG 162 >A4J4P4.1 A4J4P4_DESRM TrkA-C domain protein Length = 164 Score = 180 bits (457), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 84/160 (52%), Positives = 115/160 (71%), Gaps = 1/160 (0%) Query: 4 RESDLPGIGKKFVMQTRSGDKLVVIVHDDGRRELYHFEYDDPDQSISMITLDDDEARYIS 63 +E+DLPGIG+KF + TRSGDKLV+++HDDGRRE++HF+YDDP++SISM+TLDD+EAR +S Sbjct: 5 KETDLPGIGRKFQVNTRSGDKLVIVIHDDGRREIHHFDYDDPEESISMVTLDDNEARRVS 64 Query: 64 AIVGGITYKPKALESIEVALDDLIIEWYRLEQDFKCIGHSIGELDXXXXXXXXXXXXXEK 123 I+GG+ Y PKALES+EVA D+++ EWY++E K IG +I EL +K Sbjct: 65 GIIGGMAYLPKALESVEVAFDNMVFEWYKVESGAKAIGKTIVELQIRKKTGAMIIAIIKK 124 Query: 124 NHQKHINPGPEVLLPAECTVVAAGERHQHKQFKHILRNGC 163 + +K INPGP ++ T+V GER Q K K +L NG Sbjct: 125 D-EKIINPGPNQVIAEGATLVVIGERKQVKACKELLLNGS 163 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.140 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 962,788,555 Number of extensions: 34698297 Number of successful extensions: 73258 Number of sequences better than 1.0e-05: 191 Number of HSP's gapped: 73092 Number of HSP's successfully gapped: 191 Length of query: 164 Length of database: 3,060,696,203 Length adjustment: 124 Effective length of query: 40 Effective length of database: 1,892,490,343 Effective search space: 75699613720 Effective search space used: 75699613720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)