BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0019.p (273 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJX7.1 B1DJX7_9BACL Putative uncharacterized protein 392 e-107 B3KIU6.1 B3KIU6_9BACI Putative uncharacterized protein 247 7e-64 A4IKV4.1 A4IKV4_GEOTN ABC transporter periplasmic substrate-bind... 242 3e-62 B4BIU3.1 B4BIU3_9BACI Putative uncharacterized protein 241 4e-62 Q5L276.1 Q5L276_GEOKA ABC transporter (Substrate-binding protein) 236 1e-60 >B1DJX7.1 B1DJX7_9BACL Putative uncharacterized protein Length = 351 Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust. Identities = 198/276 (71%), Positives = 226/276 (81%), Gaps = 4/276 (1%) Query: 1 VEGENLKVDLENAQADASNNLSIAQKIAADKNDLVLGIATPSAQALVQAGSK---DTPVL 57 VEGENL VD AQ D +NNLSIAQKIA K DL LGIATPSAQALVQA S PVL Sbjct: 77 VEGENLSVDFNTAQGDQTNNLSIAQKIAGAKADLALGIATPSAQALVQAYSNAGNKAPVL 136 Query: 58 FAAVTDPVDAKIVTDLEHPGGNVSGASDTNPEATTRLMTFISEQFPNVKKLGLIINEGEP 117 FAAVTDP+ A +V+DL+ PGGNV+GASDTNP+A +LM FI+ FPNVKK+GL+IN+GE Sbjct: 137 FAAVTDPLSADLVSDLDAPGGNVTGASDTNPDAAVQLMDFIAANFPNVKKVGLVINKGES 196 Query: 118 NAVVMAETAKKELDKHGIELVKAAITNTSEVKQAAESLVGRVDALYITLDNSVVSAVDTI 177 NAVVMA TAK+ L KH IEL++A +TNTSEVKQA ESL+G+VDA+YITLDN VVS VD + Sbjct: 197 NAVVMAATAKEALAKHNIELIEAPVTNTSEVKQAGESLIGKVDAMYITLDNVVVSGVDAL 256 Query: 178 IQTANDNKIPFFSADRDTVEKGAFATVGFKYYDHGYQVGQMAVEVLKNGAKPGDMKVAMQ 237 +Q A N IPFFS+DRDTVEKGAFATVGFKYYDHGYQVGQMA E+LK G PG+MKV Sbjct: 257 LQLAKQNHIPFFSSDRDTVEKGAFATVGFKYYDHGYQVGQMAAEILK-GKNPGEMKVTKP 315 Query: 238 EKLDLIINLKAAAAQGVEVTDAMKAKVSDPDNNIIQ 273 +KLDLI+NLKAAA +G+ VTDAMKA V DPDNNIIQ Sbjct: 316 DKLDLILNLKAAADEGITVTDAMKAGVKDPDNNIIQ 351 >B3KIU6.1 B3KIU6_9BACI Putative uncharacterized protein Length = 293 Score = 247 bits (631), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 124/186 (66%), Positives = 152/186 (81%), Gaps = 1/186 (0%) Query: 4 ENLKVDLENAQADASNNLSIAQKIAADKNDLVLGIATPSAQALVQAGSKDTPVLFAAVTD 63 + LK+D NAQ D +NNLSI QK+ K DLV+ IAT SAQA+ Q K+ PVLFAAVTD Sbjct: 79 KTLKIDYNNAQGDPANNLSIGQKLKDTKADLVIAIATDSAQAVAQ-NVKEKPVLFAAVTD 137 Query: 64 PVDAKIVTDLEHPGGNVSGASDTNPEATTRLMTFISEQFPNVKKLGLIINEGEPNAVVMA 123 P+DAK+V+DL+ PGGN++GASDTNPEAT +LM F++ FPNVK++GL+++EGE NAVVMA Sbjct: 138 PLDAKLVSDLKKPGGNITGASDTNPEATKQLMNFVNTHFPNVKRIGLVLDEGEANAVVMA 197 Query: 124 ETAKKELDKHGIELVKAAITNTSEVKQAAESLVGRVDALYITLDNSVVSAVDTIIQTAND 183 TA++ L +HGIELVKAA+TNTSEVKQAAESLVG+VDA YITLDN+VVS V+TIIQTA Sbjct: 198 NTAEEVLSEHGIELVKAAVTNTSEVKQAAESLVGKVDAFYITLDNTVVSGVETIIQTAQK 257 Query: 184 NKIPFF 189 K F Sbjct: 258 TKYRSF 263 >A4IKV4.1 A4IKV4_GEOTN ABC transporter periplasmic substrate-binding protein Length = 336 Score = 242 bits (617), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 116/255 (45%), Positives = 180/255 (70%), Gaps = 2/255 (0%) Query: 2 EGENLKVDLENAQADASNNLSIAQKIAADKNDLVLGIATPSAQALVQAGSKDTPVLFAAV 61 +G ++K D++ AQ D SNN +IA A+D DL+ +TPSAQA + A +KD P++F +V Sbjct: 72 KGLSVKYDVQIAQGDQSNNQTIATNFASDGVDLIFANSTPSAQAALNA-TKDIPIIFTSV 130 Query: 62 TDPVDAKIVTDLEHPGGNVSGASDTNPEATTRLMTFISEQFPNVKKLGLIINEGEPNAVV 121 TDPV A++V +E PGGNV+G +DT+PEA + + FI+ ++ ++G++ N GE N+V Sbjct: 131 TDPVGAQLVQSMEQPGGNVTGTTDTHPEAIPKTVEFIT-KYIKGNRVGMVYNAGEQNSVA 189 Query: 122 MAETAKKELDKHGIELVKAAITNTSEVKQAAESLVGRVDALYITLDNSVVSAVDTIIQTA 181 + KK ++ +++V A+++ ++EVKQA ESLVG+VD LYI DN+VVSA++++IQ A Sbjct: 190 QVDQVKKAMEGTDLKIVSASVSTSAEVKQATESLVGKVDCLYIITDNTVVSALESVIQVA 249 Query: 182 NDNKIPFFSADRDTVEKGAFATVGFKYYDHGYQVGQMAVEVLKNGAKPGDMKVAMQEKLD 241 N++ IP F + D+V++G FA GF YYD GY+ G+MA ++L++G KP D+ V +KL Sbjct: 250 NEHDIPLFVGELDSVKRGGFAAYGFDYYDIGYEAGEMAAQILQDGKKPADLPVQYPQKLK 309 Query: 242 LIINLKAAAAQGVEV 256 L+IN KAA G+E+ Sbjct: 310 LVINKKAAQEMGIEL 324 >B4BIU3.1 B4BIU3_9BACI Putative uncharacterized protein Length = 337 Score = 241 bits (616), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 116/255 (45%), Positives = 180/255 (70%), Gaps = 2/255 (0%) Query: 2 EGENLKVDLENAQADASNNLSIAQKIAADKNDLVLGIATPSAQALVQAGSKDTPVLFAAV 61 +G ++K D++ AQ D SNN +IA A+D DL+ +TPSAQA + A +KD P++F +V Sbjct: 73 KGLSVKYDVQIAQGDQSNNQTIATNFASDGVDLIFANSTPSAQAALNA-TKDIPIIFTSV 131 Query: 62 TDPVDAKIVTDLEHPGGNVSGASDTNPEATTRLMTFISEQFPNVKKLGLIINEGEPNAVV 121 TDPV A++V +E PGGNV+G +DT+PEA + + FI+ ++ ++G++ N GE N+V Sbjct: 132 TDPVGAQLVQSMEQPGGNVTGTTDTHPEAIPKTVEFIT-KYIKGNRVGMVYNAGEQNSVA 190 Query: 122 MAETAKKELDKHGIELVKAAITNTSEVKQAAESLVGRVDALYITLDNSVVSAVDTIIQTA 181 + KK ++ +++V A+++ ++EVKQA ESLVG+VD LYI DN+VVSA++++IQ A Sbjct: 191 QVDQVKKAMEGTDLKIVSASVSTSAEVKQATESLVGKVDCLYIITDNTVVSALESVIQVA 250 Query: 182 NDNKIPFFSADRDTVEKGAFATVGFKYYDHGYQVGQMAVEVLKNGAKPGDMKVAMQEKLD 241 N++ IP F + D+V++G FA GF YYD GY+ G+MA ++L++G KP D+ V +KL Sbjct: 251 NEHDIPLFVGELDSVKRGGFAAYGFDYYDIGYEAGEMAAQILQDGKKPADLPVQYPQKLK 310 Query: 242 LIINLKAAAAQGVEV 256 L+IN KAA G+E+ Sbjct: 311 LVINKKAAQEMGIEL 325 >Q5L276.1 Q5L276_GEOKA ABC transporter (Substrate-binding protein) Length = 335 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 114/255 (44%), Positives = 178/255 (69%), Gaps = 2/255 (0%) Query: 2 EGENLKVDLENAQADASNNLSIAQKIAADKNDLVLGIATPSAQALVQAGSKDTPVLFAAV 61 +G +++ D++ AQ D SNN +IA +D DL+ +TPSAQA + A +KD P++F +V Sbjct: 71 KGLSVEYDVQIAQGDQSNNQTIANNFVSDGVDLIFANSTPSAQAALNA-TKDIPIVFTSV 129 Query: 62 TDPVDAKIVTDLEHPGGNVSGASDTNPEATTRLMTFISEQFPNVKKLGLIINEGEPNAVV 121 TDPV A++V +E PGGNV+G +DT+PEA + + FI +++ ++G++ N GE N+V Sbjct: 130 TDPVGAQLVQSMEKPGGNVTGTTDTHPEAIPKTVQFI-DKYIKGNRVGMVYNAGEQNSVA 188 Query: 122 MAETAKKELDKHGIELVKAAITNTSEVKQAAESLVGRVDALYITLDNSVVSAVDTIIQTA 181 E KK + +++V A+++ ++EVKQA ESLVG+VD LYI DN+VVSA++++IQ A Sbjct: 189 QIEQVKKAMQGTDLQIVPASVSTSAEVKQATESLVGKVDCLYIITDNTVVSALESVIQVA 248 Query: 182 NDNKIPFFSADRDTVEKGAFATVGFKYYDHGYQVGQMAVEVLKNGAKPGDMKVAMQEKLD 241 N++ IP F + D+V++G FA GF YYD GY+ G+MA ++L++G KP D+ V +KL Sbjct: 249 NEHDIPLFVGELDSVKRGGFAAYGFDYYDIGYEAGEMAAQILQDGKKPADLPVQYPQKLK 308 Query: 242 LIINLKAAAAQGVEV 256 L+IN KAA G+++ Sbjct: 309 LVINKKAAQEMGIKL 323 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.128 0.340 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,474,148,925 Number of extensions: 57284687 Number of successful extensions: 148648 Number of sequences better than 1.0e-05: 595 Number of HSP's gapped: 147299 Number of HSP's successfully gapped: 595 Length of query: 273 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 139 Effective length of database: 1,798,280,193 Effective search space: 249960946827 Effective search space used: 249960946827 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 130 (54.7 bits)