BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0018.p (299 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIU8.1 B3KIU8_9BACI Inner-membrane translocator 342 3e-92 B1DJX6.1 B1DJX6_9BACL Inner-membrane translocator 331 4e-89 C5D6N4.1 C5D6N4_9BACI Inner-membrane translocator 264 9e-69 Q5WIN5.1 Q5WIN5_BACSK ABC transporter permease 263 1e-68 B7GKV8.1 B7GKV8_ANOFW ABC-type uncharacterized transport system,... 262 2e-68 >B3KIU8.1 B3KIU8_9BACI Inner-membrane translocator Length = 306 Score = 342 bits (876), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 177/283 (62%), Positives = 207/283 (73%) Query: 1 VEMGLLYAFMALGVYITFRILDFPDLTVDGSFTTGGAIAAVMITHGYSPWLATVXXXXXX 60 +E+GLLYA MALGVYITFRILDFPDLTVDGSFTTG AIAA++IT+G +PWLAT+ Sbjct: 12 IELGLLYALMALGVYITFRILDFPDLTVDGSFTTGAAIAAILITNGVNPWLATLAAFAGG 71 Query: 61 XXXXXXXXXXHTKGKINGLLSGILMMIALYSINLRILVKPNVSLMGEDSLFTSINPLLVM 120 HTKGKINGLLSGI+MMIALYSIN+RI+ KPN+SL E ++F SI+P+ +M Sbjct: 72 MLAGICTGLLHTKGKINGLLSGIIMMIALYSINMRIMGKPNISLSQEANIFGSIDPIYIM 131 Query: 121 PFVMIAVKIXXXXXXXXXXXXXXXATGDNARMIRSFGVNTDTTTILGISLSNGMVALSGA 180 ++I K+ ATGDN RMIRSFG NTDTTTILG+S+SNG+VALSGA Sbjct: 132 LVIVIIGKLLLDAFFRTDLGLALRATGDNKRMIRSFGANTDTTTILGLSISNGLVALSGA 191 Query: 181 LIAQYSSFADSTMGIGMIVIGLASVIIGEAIFGAGNVFRATLAVVLGSIVYRIVVALALR 240 ++AQ SSFAD GIGMIVIGLASVIIGEA+ G G+VFR TLAVV GSI+YRIVVA A Sbjct: 192 VVAQQSSFADIGSGIGMIVIGLASVIIGEAVLGTGSVFRTTLAVVCGSIIYRIVVAAAYE 251 Query: 241 VPWLQASDLKXXXXXXXXXXXXFPSIQRFMKQNRLARRRSIEL 283 +PWL+ASDLK P+I R MKQ ARRRS EL Sbjct: 252 IPWLEASDLKLITAIIVIIALVVPTINRAMKQRSQARRRSTEL 294 >B1DJX6.1 B1DJX6_9BACL Inner-membrane translocator Length = 304 Score = 331 bits (849), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 169/287 (58%), Positives = 207/287 (72%), Gaps = 2/287 (0%) Query: 2 EMGLLYAFMALGVYITFRILDFPDLTVDGSFTTGGAIAAVMITHGYSPWLATVXXXXXXX 61 E+GLLY+ MALGVYITFRILDFPDLTVD SFTTG +AAV+IT+G SPWLA + Sbjct: 10 ELGLLYSLMALGVYITFRILDFPDLTVDASFTTGAGVAAVLITNGTSPWLACLAAFGAGA 69 Query: 62 XXXXXXXXXHTKGKINGLLSGILMMIALYSINLRILVKPNVSLMGED--SLFTSINPLLV 119 HTKGKINGLLSGILMMIALYS+N+RI+ KPN+ LMG D ++F+ + L++ Sbjct: 70 AAGAITGLLHTKGKINGLLSGILMMIALYSVNMRIMGKPNIGLMGSDISTVFSGVKVLVL 129 Query: 120 MPFVMIAVKIXXXXXXXXXXXXXXXATGDNARMIRSFGVNTDTTTILGISLSNGMVALSG 179 MP V++ +K+ ATGDN RMIRSFG NTDTT I+GI+LSNG+VALSG Sbjct: 130 MPIVVVIIKVLLDLFFKTDLGLSLRATGDNERMIRSFGTNTDTTKIMGIALSNGLVALSG 189 Query: 180 ALIAQYSSFADSTMGIGMIVIGLASVIIGEAIFGAGNVFRATLAVVLGSIVYRIVVALAL 239 + +AQ S FAD TMG+GMIVIGLASVIIGEA+FGA VFRATLAVVLGSIVYRI++ LA Sbjct: 190 SFVAQQSGFADITMGVGMIVIGLASVIIGEALFGAKTVFRATLAVVLGSIVYRIIIGLAY 249 Query: 240 RVPWLQASDLKXXXXXXXXXXXXFPSIQRFMKQNRLARRRSIELANQ 286 + + +ASDLK FPS+Q+ KQ R+A++R+ L N Sbjct: 250 QSDFFEASDLKLITAVIVIIALVFPSLQKSWKQKRMAQKRTAALLNS 296 >C5D6N4.1 C5D6N4_9BACI Inner-membrane translocator Length = 325 Score = 264 bits (674), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 147/307 (47%), Positives = 190/307 (61%), Gaps = 27/307 (8%) Query: 1 VEMGLLYAFMALGVYITFRILDFPDLTVDGSFTTGGAIAAVMITHGYSPWLATVXXXXXX 60 +E G +YA MALGVY++FRILDFPDLTVDGSF TG A+A+V+I +G +P+LA+ Sbjct: 9 IEAGFIYAIMALGVYLSFRILDFPDLTVDGSFVTGAAVASVLIINGTNPFLASAAALLVG 68 Query: 61 XXXXXXXXXXHTKGKINGLLSGILMMIALYSINLRILVKPNVSLMGEDSLFTS------- 113 HTKGKIN LLSGILMMIALYSINLRI+ + NV L+ +D++ T+ Sbjct: 69 FAAGSITGILHTKGKINPLLSGILMMIALYSINLRIMGRSNVPLLQQDTVMTAMTEAWQN 128 Query: 114 ------INPLL--------------VMPFVMIAVKIXXXXXXXXXXXXXXXATGDNARMI 153 IN ++ M FV+I +K+ ATGDN +M+ Sbjct: 129 AGLDKAINSMISFAGFVPRTWAIFVTMAFVVIVIKLLLDQLLKTEIGLALRATGDNKQMV 188 Query: 154 RSFGVNTDTTTILGISLSNGMVALSGALIAQYSSFADSTMGIGMIVIGLASVIIGEAIFG 213 SF NTD TI G+ LSN +VA SGAL+AQY F+D MGIGMIVIGLASVIIGEA+FG Sbjct: 189 SSFSANTDWLTIFGLGLSNALVAFSGALVAQYGGFSDVGMGIGMIVIGLASVIIGEALFG 248 Query: 214 AGNVFRATLAVVLGSIVYRIVVALALRVPWLQASDLKXXXXXXXXXXXXFPSIQRFMKQN 273 A + RATLAV+ G+IVYRI++ALALRV +L+ D+K P+I K+ Sbjct: 249 ARTIARATLAVIGGAIVYRIILALALRVQFLETGDVKLITAVIVIVALIVPNIVAAQKEK 308 Query: 274 RLARRRS 280 R +R++ Sbjct: 309 RSKKRKT 315 >Q5WIN5.1 Q5WIN5_BACSK ABC transporter permease Length = 336 Score = 263 bits (673), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 152/310 (49%), Positives = 193/310 (62%), Gaps = 32/310 (10%) Query: 1 VEMGLLYAFMALGVYITFRILDFPDLTVDGSFTTGGAIAAVMITHGYSPWLATVXXXXXX 60 VE+GL+Y MALGVY++FRILDFPDLTVDGS+ TG A+AA+MIT GYSP LAT Sbjct: 9 VELGLIYGIMALGVYLSFRILDFPDLTVDGSYVTGAAVAAIMITSGYSPLLATFCALVVG 68 Query: 61 XXXXXXXXXXHTKGKINGLLSGILMMIALYSINLRIL-VKPNVSLMGEDSLFT------- 112 HTKGKIN LLSGILMMIALYSINLRI+ PN+SLM EDSL T Sbjct: 69 FIAGCLTGTLHTKGKINPLLSGILMMIALYSINLRIMGNSPNISLMREDSLLTVFTDWWA 128 Query: 113 ------SINPLL--------------VMPFVMI---AVKIXXXXXXXXXXXXXXXATGDN 149 ++N L ++ FV++ AVK+ ATGDN Sbjct: 129 GLPIDNAVNGALTSIGLGGFTPSSWSILVFVIVLVLAVKLVIDFFLKTESGLALRATGDN 188 Query: 150 ARMIRSFGVNTDTTTILGISLSNGMVALSGALIAQYSSFADSTMGIGMIVIGLASVIIGE 209 +MIRS NTD I+G+ +SN VAL+GA AQY+ FAD MGIGMI+IGLASVIIGE Sbjct: 189 PKMIRSLSANTDRLKIIGLGMSNAFVALAGATAAQYTKFADVNMGIGMIIIGLASVIIGE 248 Query: 210 AIFGAGNVFRATLAVVLGSIVYRIVVALALRVPWLQASDLKXXXXXXXXXXXXFPS-IQR 268 A+FG G++ + T AV++G++VYRI++ALALRV +L+A DL+ P I++ Sbjct: 249 ALFGKGSLVKITFAVIIGAVVYRIIIALALRVEFLEAGDLRLITAVIVICALVVPMLIEQ 308 Query: 269 FMKQNRLARR 278 ++R A+R Sbjct: 309 SRNKSRKAKR 318 >B7GKV8.1 B7GKV8_ANOFW ABC-type uncharacterized transport system, permease component Length = 327 Score = 262 bits (670), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 155/308 (50%), Positives = 192/308 (62%), Gaps = 23/308 (7%) Query: 1 VEMGLLYAFMALGVYITFRILDFPDLTVDGSFTTGGAIAAVMITHGYSPWLATVXXXXXX 60 VE GLLYA MALGVYI+FRILDFPDLTVDGSF TG A+A+V+I G +P++A++ Sbjct: 12 VEAGLLYALMALGVYISFRILDFPDLTVDGSFVTGAAVASVLIVAGVNPFIASLAALGAG 71 Query: 61 XXXXXXXXXXHTKGKINGLLSGILMMIALYSINLRILVKPNVSLMGEDSLFTSINPLL-- 118 HTKGKIN LLSGILMMIALYSINLRI+ KPNV L+ ++++ T I Sbjct: 72 FFAGCMTGLLHTKGKINPLLSGILMMIALYSINLRIMDKPNVPLLQQETVMTIITKAFQR 131 Query: 119 -------VMPFV-------------MIAVKIXXXXXXXXXXXXXXXATGDNARMIRSFGV 158 V+PFV ++ VK+ A GDN +MI SF Sbjct: 132 FDQALATVIPFVPKTWGIVVFGMLLVVIVKVVIDLFLKTEVGLAIRAVGDNKKMIASFSG 191 Query: 159 NTDTTTILGISLSNGMVALSGALIAQYSSFADSTMGIGMIVIGLASVIIGEAIFGAGNVF 218 NTD TI+G+ LSN +VA SGALIAQYS F+D MGIGMIVIGLASVIIGEA+FGA + Sbjct: 192 NTDRLTIIGLGLSNALVAFSGALIAQYSGFSDIGMGIGMIVIGLASVIIGEALFGAKTIV 251 Query: 219 RATLAVVLGSIVYRIVVALALRVPWLQASDLKXXXXXXXXXXXXFPS-IQRFMKQNRLAR 277 RATLAV+ G+IVYRIV+ LALRV +L+ D+K P I ++ R AR Sbjct: 252 RATLAVIFGAIVYRIVITLALRVQFLETGDVKLITALIVILALVVPQMIAARAEKQRKAR 311 Query: 278 RRSIELAN 285 +R +A+ Sbjct: 312 KRGAAVAS 319 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.327 0.140 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,239,951,399 Number of extensions: 40701114 Number of successful extensions: 199840 Number of sequences better than 1.0e-05: 472 Number of HSP's gapped: 198769 Number of HSP's successfully gapped: 480 Length of query: 299 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 164 Effective length of database: 1,788,859,178 Effective search space: 293372905192 Effective search space used: 293372905192 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)