BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0017.p (264 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KIU9.1 B3KIU9_9BACI ABC transporter related 447 e-124 B1DJX5.1 B1DJX5_9BACL ABC transporter related 429 e-118 Q5KYC3.1 Q5KYC3_GEOKA ABC transporter (ATP-binding protein) 365 2e-99 C3J6C1.1 C3J6C1_9BACI ABC transporter related 363 6e-99 B7YC50.1 B7YC50_9BACI ABC transporter related protein 363 6e-99 >B3KIU9.1 B3KIU9_9BACI ABC transporter related Length = 264 Score = 447 bits (1151), Expect = e-124, Method: Compositional matrix adjust. Identities = 218/264 (82%), Positives = 247/264 (93%) Query: 1 MLKLDHVSKLFNPGTPDEKIALLGIDLELRAGDFVTVIGSNGAGKSTLMNVISGVMKPDL 60 ML+++HVSKLFNPGT DEKIAL+ I+L L++GDFVTVIGSNGAGKSTLMN+ISGVMKPD Sbjct: 1 MLEMNHVSKLFNPGTVDEKIALMDINLRLKSGDFVTVIGSNGAGKSTLMNIISGVMKPDA 60 Query: 61 GEVRIEGTSISGQSEFQRARWIGRVFQDPMAGTAPHMTIEENLAMAYKRGQSRGLSFGVS 120 GEVRI+GTSI EF+R+RWIGRVFQDPMAGTAPHMTIEENLAMAY+RGQSRGLS GV+ Sbjct: 61 GEVRIDGTSIGHLPEFRRSRWIGRVFQDPMAGTAPHMTIEENLAMAYRRGQSRGLSIGVT 120 Query: 121 AARRTLFREQLSRLGIGLENRLRAKVGLLSGGERQALSLLMATFTQPQILLLDEHTAALD 180 A++R FR+ L RLGIGLE+RLRAKVG+LSGGERQALSLLMATFTQPQILLLDEHTAALD Sbjct: 121 ASKRAGFRKHLERLGIGLEDRLRAKVGMLSGGERQALSLLMATFTQPQILLLDEHTAALD 180 Query: 181 PARAELITRLTESIVRELKLTTLMVTHNMEQAIRLGNRLIMMDKGSIILDIDEDRKQDLT 240 PARAELITR+T+ IVR++KLTTLMVTHNMEQAIRLGNRLIMMDKG IILD+DE+RK+ LT Sbjct: 181 PARAELITRITDDIVRDMKLTTLMVTHNMEQAIRLGNRLIMMDKGRIILDVDEERKKSLT 240 Query: 241 VERLLGEFEGISGHKLADDRMMLG 264 VE+LLGEFE ISGHKL+DDR++LG Sbjct: 241 VEQLLGEFEQISGHKLSDDRLVLG 264 >B1DJX5.1 B1DJX5_9BACL ABC transporter related Length = 264 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 208/264 (78%), Positives = 236/264 (89%) Query: 1 MLKLDHVSKLFNPGTPDEKIALLGIDLELRAGDFVTVIGSNGAGKSTLMNVISGVMKPDL 60 ML++ VSKLFNPGT DEK AL+ +L ++ GDF+TVIGSNGAGKSTLMN+ISGVMKPD Sbjct: 1 MLEISKVSKLFNPGTLDEKTALVNTNLAMKPGDFITVIGSNGAGKSTLMNIISGVMKPDT 60 Query: 61 GEVRIEGTSISGQSEFQRARWIGRVFQDPMAGTAPHMTIEENLAMAYKRGQSRGLSFGVS 120 GEVRIEG +IS EF+R++WIGRVFQDPMAGTAP M+IEENLAMAY RG+ RG S ++ Sbjct: 61 GEVRIEGKNISNLPEFRRSKWIGRVFQDPMAGTAPRMSIEENLAMAYTRGKQRGFSLSIN 120 Query: 121 AARRTLFREQLSRLGIGLENRLRAKVGLLSGGERQALSLLMATFTQPQILLLDEHTAALD 180 RR +FREQLSRLGIGLENRL AKVGLLSGGERQALSLLMATFT+PQILLLDEHTAALD Sbjct: 121 RGRRAIFREQLSRLGIGLENRLSAKVGLLSGGERQALSLLMATFTKPQILLLDEHTAALD 180 Query: 181 PARAELITRLTESIVRELKLTTLMVTHNMEQAIRLGNRLIMMDKGSIILDIDEDRKQDLT 240 PARAELIT LTE++VRE+ LTTLMVTHNMEQAIRLGNRLIMMDKG IIL+++EDRK+DLT Sbjct: 181 PARAELITTLTETLVREMNLTTLMVTHNMEQAIRLGNRLIMMDKGRIILEVNEDRKKDLT 240 Query: 241 VERLLGEFEGISGHKLADDRMMLG 264 VERLLGEFE ISG K+ADDR++LG Sbjct: 241 VERLLGEFEQISGKKMADDRVVLG 264 >Q5KYC3.1 Q5KYC3_GEOKA ABC transporter (ATP-binding protein) Length = 267 Score = 365 bits (937), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 185/263 (70%), Positives = 214/263 (81%) Query: 1 MLKLDHVSKLFNPGTPDEKIALLGIDLELRAGDFVTVIGSNGAGKSTLMNVISGVMKPDL 60 ML+L + K+F+ GTPDEKIAL I L LR GDFVTVIGSNGAGKSTLMN+ISGV+ PD Sbjct: 4 MLQLKGIYKVFHEGTPDEKIALQNIHLTLRKGDFVTVIGSNGAGKSTLMNLISGVLFPDE 63 Query: 61 GEVRIEGTSISGQSEFQRARWIGRVFQDPMAGTAPHMTIEENLAMAYKRGQSRGLSFGVS 120 G + I+G ++ E+ R+R+IGRVFQDPMAGTAP+MTIEENLAMAY R Q R L GV+ Sbjct: 64 GTIWIDGQDVTMMPEYVRSRYIGRVFQDPMAGTAPNMTIEENLAMAYTRNQKRTLRRGVT 123 Query: 121 AARRTLFREQLSRLGIGLENRLRAKVGLLSGGERQALSLLMATFTQPQILLLDEHTAALD 180 RR FRE LS L +GLENRL+AKVGLLSGGERQALSLLMATFT+P ILLLDEHTAALD Sbjct: 124 KKRRDDFRELLSTLHLGLENRLQAKVGLLSGGERQALSLLMATFTEPAILLLDEHTAALD 183 Query: 181 PARAELITRLTESIVRELKLTTLMVTHNMEQAIRLGNRLIMMDKGSIILDIDEDRKQDLT 240 PARAELIT LT+ IV +LTTLMVTHNM+QAI LGNRLIMMDKG II ++DE+ K+ LT Sbjct: 184 PARAELITNLTKEIVERYRLTTLMVTHNMQQAIDLGNRLIMMDKGQIIFEVDENEKKSLT 243 Query: 241 VERLLGEFEGISGHKLADDRMML 263 VE+LL EF+ I G +LA DR +L Sbjct: 244 VEKLLAEFQRIRGEQLASDRAVL 266 >C3J6C1.1 C3J6C1_9BACI ABC transporter related Length = 264 Score = 363 bits (933), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 184/263 (69%), Positives = 213/263 (80%) Query: 1 MLKLDHVSKLFNPGTPDEKIALLGIDLELRAGDFVTVIGSNGAGKSTLMNVISGVMKPDL 60 ML+L + K+F+ GTPDEKIAL I L LR GDFVTVIGSNGAGKSTLMN+ISGV+ PD Sbjct: 1 MLQLKGIYKVFHEGTPDEKIALQNIHLTLRKGDFVTVIGSNGAGKSTLMNLISGVLFPDE 60 Query: 61 GEVRIEGTSISGQSEFQRARWIGRVFQDPMAGTAPHMTIEENLAMAYKRGQSRGLSFGVS 120 G + I+G ++ E+ R+R+IGRVFQDPMAGTAP+MTIEENLAMAY R Q R L GV+ Sbjct: 61 GTIWIDGQDVTMMPEYVRSRYIGRVFQDPMAGTAPNMTIEENLAMAYTRNQKRTLRRGVT 120 Query: 121 AARRTLFREQLSRLGIGLENRLRAKVGLLSGGERQALSLLMATFTQPQILLLDEHTAALD 180 RR FRE LS L +GLENRL+AKVGLLSGGERQALSLLMATFT+P ILLLDEHTAALD Sbjct: 121 KKRRDDFRELLSTLHLGLENRLQAKVGLLSGGERQALSLLMATFTEPAILLLDEHTAALD 180 Query: 181 PARAELITRLTESIVRELKLTTLMVTHNMEQAIRLGNRLIMMDKGSIILDIDEDRKQDLT 240 PARAELIT LT+ IV +LTTLMVTHNM+QAI LGNRLIMMDKG II ++DE+ K+ LT Sbjct: 181 PARAELITNLTKEIVERYRLTTLMVTHNMQQAIDLGNRLIMMDKGQIIFEVDENEKKSLT 240 Query: 241 VERLLGEFEGISGHKLADDRMML 263 VE+LL EF+ I G +L DR +L Sbjct: 241 VEKLLAEFQRIRGEQLVSDRAVL 263 >B7YC50.1 B7YC50_9BACI ABC transporter related protein Length = 264 Score = 363 bits (933), Expect = 6e-99, Method: Compositional matrix adjust. Identities = 184/263 (69%), Positives = 213/263 (80%) Query: 1 MLKLDHVSKLFNPGTPDEKIALLGIDLELRAGDFVTVIGSNGAGKSTLMNVISGVMKPDL 60 ML+L + K+F+ GTPDEKIAL I L LR GDFVTVIGSNGAGKSTLMN+ISGV+ PD Sbjct: 1 MLQLKGIYKVFHEGTPDEKIALQNIHLTLRKGDFVTVIGSNGAGKSTLMNLISGVLFPDE 60 Query: 61 GEVRIEGTSISGQSEFQRARWIGRVFQDPMAGTAPHMTIEENLAMAYKRGQSRGLSFGVS 120 G + I+G ++ E+ R+R+IGRVFQDPMAGTAP+MTIEENLAMAY R Q R L GV+ Sbjct: 61 GTIWIDGQDVTMMPEYVRSRYIGRVFQDPMAGTAPNMTIEENLAMAYTRNQKRTLRRGVT 120 Query: 121 AARRTLFREQLSRLGIGLENRLRAKVGLLSGGERQALSLLMATFTQPQILLLDEHTAALD 180 RR FRE LS L +GLENRL+AKVGLLSGGERQALSLLMATFT+P ILLLDEHTAALD Sbjct: 121 KKRRDDFRELLSTLHLGLENRLQAKVGLLSGGERQALSLLMATFTEPAILLLDEHTAALD 180 Query: 181 PARAELITRLTESIVRELKLTTLMVTHNMEQAIRLGNRLIMMDKGSIILDIDEDRKQDLT 240 PARAELIT LT+ IV +LTTLMVTHNM+QAI LGNRLIMMDKG II ++DE+ K+ LT Sbjct: 181 PARAELITNLTKEIVERYRLTTLMVTHNMQQAIDLGNRLIMMDKGQIIFEVDENEKKSLT 240 Query: 241 VERLLGEFEGISGHKLADDRMML 263 VE+LL EF+ I G +L DR +L Sbjct: 241 VEKLLAEFQRIRGEQLVSDRAVL 263 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,439,369,939 Number of extensions: 55247425 Number of successful extensions: 473858 Number of sequences better than 1.0e-05: 88797 Number of HSP's gapped: 366961 Number of HSP's successfully gapped: 95285 Length of query: 264 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 131 Effective length of database: 1,807,701,208 Effective search space: 236808858248 Effective search space used: 236808858248 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)