BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0015.p (519 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJR4.1 B1DJR4_9BACL Two component transcriptional regulator, A... 453 e-125 B3KGV0.1 B3KGV0_9BACI Response regulator receiver 431 e-118 A9U6T6.1 A9U6T6_PHYPA Predicted protein (Fragment) 231 1e-58 B9MPG5.1 B9MPG5_ANATD Two component transcriptional regulator, A... 200 3e-49 A4XHB8.1 A4XHB8_CALS8 Two component transcriptional regulator, A... 187 2e-45 >B1DJR4.1 B1DJR4_9BACL Two component transcriptional regulator, AraC family Length = 519 Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust. Identities = 241/520 (46%), Positives = 322/520 (61%), Gaps = 9/520 (1%) Query: 2 YKLLLVDDERLILEGISQVVDWAQAGTELAGTARNGIEALDQIERLRPDIVITDISMPGL 61 YK+LL+DDER+ILEGI+ ++DW + GT+LAGTARNG+EAL IE PDI+I+DI MPG+ Sbjct: 3 YKVLLIDDERIILEGIASLMDWDKYGTQLAGTARNGLEALQFIETQTPDIIISDIRMPGM 62 Query: 62 DGLGLVERCSVHYPGLKFVMLTGYKDFDYACTAMQHGVKHYLLKPCNEQQIHEALTELVQ 121 DGL LV+R YP + +ML+G+ DF+YA AMQ+GVKHYLLKPCNE I EA+ +V+ Sbjct: 63 DGLSLVKRVKEAYPHIACIMLSGFGDFEYARQAMQYGVKHYLLKPCNENTIAEAIVSVVE 122 Query: 122 ELNELHSREQFMSDMKHRLTKVLPHVKAQFLKEWISNKTYGSRDLEYYQELFGIELGSKN 181 +L++ + F+ M+ L KVLP K QFLKE+++NK YG R+ + Y LFGI+L + Sbjct: 123 QLDQERRTDAFLQRMQEELKKVLPSAKEQFLKEYVTNKRYGRREWDEYGRLFGIQLENLE 182 Query: 182 VXXXXXXXXXXXXXXHLFALQNIAGDLLSE--VLLSTTIGSQLLILM--EQPEEADNQRD 237 HLFAL+NIA D++ + +LLSTTIGSQLLIL+ + PE + Sbjct: 183 ARLLLCQLEGPFEFDHLFALKNIAEDIIGKPTILLSTTIGSQLLILIRDQYPES-----E 237 Query: 238 LLERIAGVKEIFFNFYQIHVTIAVSDKGRMIHSRSLYRQTLQCMNHRFYLEEGSLITGSD 297 LL +A VK F ++++ TIA+SD G + +R +Y T C+NHRFYL GSLIT D Sbjct: 238 LLTVLADVKRTFTGYFKLDTTIAISDAGELAEARKMYMDTRSCLNHRFYLGGGSLITVRD 297 Query: 298 IPADELSVHSEIDLGEEQICLLVKAGDQAAVQNELERLFGVLADQRFDINVTRSYVLQLY 357 I + + Q+C+ K+G+ V ELE F +LA+ R D + +SYV+ LY Sbjct: 298 IQQQDEQEEQAFLFDDTQLCMAAKSGNWEEVNKELEEAFRILAELRLDNSTAKSYVIPLY 357 Query: 358 SAMIRLCSPDERSSFXXXXXXXXXXXXXXXXKAGVMRAAERLTAMYERHFVSRQSSIVDK 417 A+IR P + + ++ V AA ++ R S I+ K Sbjct: 358 VALIRQAEPKRMNEYLQLLAKLESLSTLQALQSFVEDAAMQICQENYEIQSCRHSGIIQK 417 Query: 418 MLRIIEADYGNSELSLGSVAAEMLYMNPDYLGKIFKKVTGEKFSNYVTNYRIGKASGHIL 477 M+ I+ N LSL A+E+LYMN DYLGK+FKK TG+KFSNYV R+ KA I Sbjct: 418 MMNIVSEHMSNPALSLQWAASEILYMNADYLGKLFKKETGDKFSNYVMKTRMDKALELIE 477 Query: 478 HSGDVKVFELAELYGFGGNAQYFSQVFKKVTGKTPTDFMK 517 S DVKVFELAE GFG N YFSQVFKK TGK+P+DF K Sbjct: 478 ASSDVKVFELAEQLGFGDNPHYFSQVFKKYTGKSPSDFKK 517 >B3KGV0.1 B3KGV0_9BACI Response regulator receiver Length = 515 Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust. Identities = 241/524 (45%), Positives = 339/524 (64%), Gaps = 19/524 (3%) Query: 1 MYKLLLVDDERLILEGISQVVDWAQAGTELAGTARNGIEALDQIERLRPDIVITDISMPG 60 MYK+LLVDDER+IL+GISQ+VDW+ TELAGTA+NGI+A ++I R PDIV+ DI MPG Sbjct: 1 MYKVLLVDDERIILDGISQMVDWSAYRTELAGTAQNGIQAYEKIVRESPDIVVCDIRMPG 60 Query: 61 LDGLGLVERCSVHYPGLKFVMLTGYKDFDYACTAMQHGVKHYLLKPCNEQQIHEALTELV 120 LDGL LV + +P +KFV+L+G+ +F+YA AMQ+GVKHYLLKP +E +I AL E++ Sbjct: 61 LDGLELVAKTHASHPHIKFVLLSGFGEFEYANRAMQYGVKHYLLKPTDEDKIGGALKEVI 120 Query: 121 QELNELHSREQFMSDMKHRLTKVLPHVKAQFLKEWISNKTYGSRDLEYYQELFGIELGSK 180 EL + ++E F+ +MK RL KVLPHVK Q LKE+++NKTYG DLE Y+ LF + + Sbjct: 121 DELTQYRNKETFVQEMKDRLRKVLPHVKEQVLKEFVTNKTYGRHDLEEYRSLFEYDF-DQ 179 Query: 181 NVXXXXXXXXXXXXXXHLFALQNIAGDLLSEVLLSTTIGSQLLILMEQPEEADNQRDLLE 240 V H FA++NIA DLL LLSTTIG Q+L+L+ E+ ++Q+ L + Sbjct: 180 PVRLLLFQLEGSVEFEHQFAVKNIAEDLLDTTLLSTTIGQQVLVLI---EDRNDQQRLHQ 236 Query: 241 RIAGVKEIFFNFYQIHVTIAVSDKGRMIHSRSLYRQTLQCMNHRFYLEEGSLITGSDIPA 300 ++ ++ F +Y++ VTIA+SD G + +R LYR TLQC+N+RFYL+E +IT D Sbjct: 237 QLQDIRCTFKQYYKMDVTIAISDPGPVTQARRLYRDTLQCLNYRFYLDESGMITTED--- 293 Query: 301 DELSVH-----SEIDLGEEQICLLVKAGDQAAVQNELERLFGVLADQRFDINVTRSYVLQ 355 ++H L EE++C+ V++G + + L L + I +T+SY++Q Sbjct: 294 ---TLHVGGMEGSFVLDEERLCMPVRSGHRNEAELALTEFVQELKRAQLSIEMTKSYIIQ 350 Query: 356 LYSAMIRLCSPDERSSFXXXXXXXXXXXXXXXXKAGVMRAAERLTAM--YERHFVSRQSS 413 Y ++IRL PD+ + GV+ R + +ER+ V + ++ Sbjct: 351 QYVSLIRLTDPDQMQERYARIPEIAEMSTLQAIQ-GVLEETVREITLRNFERNKV-QYNA 408 Query: 414 IVDKMLRIIEADYGNSELSLGSVAAEMLYMNPDYLGKIFKKVTGEKFSNYVTNYRIGKAS 473 IV K++ IIE GNSEL+L VA +MLYMN DYLGK+FKK TGEKFSNYV R+ +A+ Sbjct: 409 IVRKVVEIIENQLGNSELTLNLVANDMLYMNADYLGKLFKKETGEKFSNYVMKLRMKRAT 468 Query: 474 GHILHSGDVKVFELAELYGFGGNAQYFSQVFKKVTGKTPTDFMK 517 +L D+K+FE+AE GFG N QYFSQVFKK G TP+++MK Sbjct: 469 EMMLSDPDIKIFEMAERLGFGDNPQYFSQVFKKQIGCTPSEYMK 512 >A9U6T6.1 A9U6T6_PHYPA Predicted protein (Fragment) Length = 241 Score = 231 bits (589), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 118/244 (48%), Positives = 162/244 (66%), Gaps = 4/244 (1%) Query: 20 VVDWAQAGTELAGTARNGIEALDQIERLRPDIVITDISMPGLDGLGLVERCSVHYPGLKF 79 +VDW GTEL+GTA+NG++A D I PDIVI+DI MPGLDGLGLV + +P +KF Sbjct: 1 MVDWQAFGTELSGTAQNGLQAYDLIAANPPDIVISDIRMPGLDGLGLVAQTYATHPNVKF 60 Query: 80 VMLTGYKDFDYACTAMQHGVKHYLLKPCNEQQIHEALTELVQELNELHSREQFMSDMKHR 139 V+L+G+ +F+YA AMQ+GVKHYLLKP +E +I ++L E+ EL++ RE F DMK R Sbjct: 61 VLLSGFGEFEYANRAMQYGVKHYLLKPTDETKIADSLKEVTAELDQERRREAFTLDMKRR 120 Query: 140 LTKVLPHVKAQFLKEWISNKTYGSRDLEYYQELFGIELGSKNVXXXXXXXXXXXXXXHLF 199 KV+PHVK Q L+E+++NKTYG RDLE Y+ L + G + V H F Sbjct: 121 FEKVIPHVKEQVLREFVTNKTYGRRDLEEYRSLLPCDFG-RPVRLLLCHIEGEADYEHQF 179 Query: 200 ALQNIAGDLLSEVLLSTTIGSQLLILMEQPEEADNQRDLLERIAGVKEIFFNFYQIHVTI 259 A++NIA DLL L+STT+G LIL+ PE +Q L R+ ++ F +Y+++VT+ Sbjct: 180 AVKNIAEDLLQTALMSTTLGDHALILISDPE---DQELLHSRLQDIRRTFRLYYKLNVTV 236 Query: 260 AVSD 263 AVSD Sbjct: 237 AVSD 240 >B9MPG5.1 B9MPG5_ANATD Two component transcriptional regulator, AraC family Length = 546 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 149/538 (27%), Positives = 275/538 (51%), Gaps = 28/538 (5%) Query: 1 MYKLLLVDDERLILEGISQVVDWAQAGTELAGTARNGIEALDQIERLRPDIVITDISMPG 60 MYK+++VDD+ LI +GI V+ W E++G A +G +AL IE+++PDIVITDI MP Sbjct: 1 MYKIVIVDDDMLIRKGIRNVIRWKDLDCEISGEASSGDDALKVIEKVKPDIVITDIKMPN 60 Query: 61 LDGLGLVERCSVHYPGLKFVMLTGYKDFDYACTAMQHGVKHYLLKPCNEQQIHEALTELV 120 +DG+ L+ER P K V+LT Y++F+YA A++ G +LLKP + I + + + Sbjct: 61 MDGIELIERIKKIIPHCKIVILTAYREFEYAQRAIKCGAFDFLLKPTKVEDIINVVQKAI 120 Query: 121 QELNELHSREQFMSDMKHRLTKVLPHVKAQFL----KEWISNKTYGSRDLEYYQELFGIE 176 E+ + + + + + + L + LP ++ FL E ISN+ + Y+ I Sbjct: 121 DEIKKEKTILEEVEKINNILKEKLPILRENFLFNVMFEMISNEDEILQMASLYEIEIDIF 180 Query: 177 LGSKNVXXXXXXXXXXXXXXHLFALQNIAGDLLSEVLLSTTI---GSQLLILMEQ--PEE 231 L +L + N+ D LS TI SQ + ++ + Sbjct: 181 LMILAECSTKEERGRQNTHLYLLGISNMLNDFLSNNFTIYTIYLNNSQAVYIVNSKKELD 240 Query: 232 ADNQRDLLERIAGVKEIFFNFYQIHVTIAVSDKGR-MIHSRSLYRQTLQCMNHRFYLEEG 290 + ++ E ++ +K+ + I +T AVS GR ++ Y++ + +N+RFY +E Sbjct: 241 KEEEKKFFELLSQLKKAAMECFNIDLTFAVSTWGRGLVQLPDKYKECIDAINYRFYFDEE 300 Query: 291 SLITGSDIPADELSVHS-EIDLGEEQICLLVKAGDQAAVQNEL----ERLFGVLADQRFD 345 +I D+ + V ++ + +I L V+ G+ + + N L E L AD+++ Sbjct: 301 DIIYYKDLSHFFMYVDDRKLKNLKNEILLSVRYGNYSNINNILLELEETLKKSKADKQYI 360 Query: 346 INVTRSYVLQLYSAMIR------LCSPDERSSFXXXXXXXXXXXXXXXXK-AGVMR-AAE 397 N Y+L + MI+ + PD F + + ++R + + Sbjct: 361 FNFY--YLLLIEINMIKAQLSSAINKPDNPEMFENFDYFNEIIKCKSLSELSNILRISIQ 418 Query: 398 RLTAMYERHFVSRQSSIVDKMLRIIEADYGNSELSLGSVAAEMLYMNPDYLGKIFKKVTG 457 R ++H +++ S++ K++ I+ +Y +SE+SL + +E +++P YL ++FKK TG Sbjct: 419 RTIEEVQKHNLNKMGSLIKKVIDYIKENYHSSEISLSDI-SEKFFVSPSYLSRLFKKETG 477 Query: 458 EKFSNYVTNYRIGKASGHILHSGDVKVFELAELYGFGGNAQYFSQVFKKVTGKTPTDF 515 + S+++ YRI KA +L + D+K +E+A+ G + YFS++FK+ TG +P+++ Sbjct: 478 KNLSDFINEYRIEKAK-QLLLTTDIKTYEVADKVGI-PDPHYFSRLFKRYTGYSPSEY 533 >A4XHB8.1 A4XHB8_CALS8 Two component transcriptional regulator, AraC family Length = 546 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 142/542 (26%), Positives = 263/542 (48%), Gaps = 36/542 (6%) Query: 1 MYKLLLVDDERLILEGISQVVDWAQAGTELAGTARNGIEALDQIERLRPDIVITDISMPG 60 MYK+L+VDD+ LI +GI V+ W E+ A G EAL+ I++ PDIVITDI MP Sbjct: 1 MYKILIVDDDMLIRKGIRNVIRWKDFDCEICAEASTGEEALELIKKFTPDIVITDIRMPN 60 Query: 61 LDGLGLVERCSVHYPGLKFVMLTGYKDFDYACTAMQHGVKHYLLKPCNEQQIHEALTELV 120 +DG+ L+ER P K ++LT Y++F+YA A++ G +LLKP + I + + + Sbjct: 61 MDGIELIERIKAILPQCKIIILTAYREFEYAQRAIKFGAFDFLLKPTKVEDIINVVQKAI 120 Query: 121 QELNELHSREQFMSDMKHRLTKVLPHVKAQFLKEWISNKTYGSRDLEYYQELFGIELGSK 180 E+N+ + + + + L + LP ++ FL I ++ E++ I++ K Sbjct: 121 AEINKEKTMIEELEKINRLLQEKLPILRENFLFNVIFEMITNEDEIVQMAEVYKIDI--K 178 Query: 181 NVXXXXX----XXXXXXXXXHLFAL--QNIAGDLLSEVLLSTTI---GSQLLILMEQPEE 231 N HL+ L NI D + + TI SQ + ++ E Sbjct: 179 NFVMILAECGIKEENEKPNSHLYLLGVSNILNDFIDKDCSIYTIYLNNSQAVYVVSFECE 238 Query: 232 ADNQRDL--LERIAGVKEIFFNFYQIHVTIAVSDKGR-MIHSRSLYRQTLQCMNHRFYLE 288 + +L E + +K+ + I +T+ VS G ++ + +++ + +N++FY + Sbjct: 239 PSKKEELEFFELLKQLKKAAIECFNIDLTLVVSTWGYGIVELPNKFKECIDAINYKFYFD 298 Query: 289 EGSLITGSDIPADELSVH-SEIDLGEEQICLLVKAGDQAAVQNELERLFGVLADQRFDIN 347 +I D+ + V ++ + +I V+ G+ + + L L L + D Sbjct: 299 NEDIIYYKDLSHLFVYVDDKKLKYLKNEIISNVRYGNISNIDILLSELEETLKKSKAD-- 356 Query: 348 VTRSYVLQLYS------AMIRLCSPDERSSFXXXXXXXXXXXXXXXXKA-------GVMR 394 + Y+ LY MI+ S + K GV++ Sbjct: 357 --KQYIFNLYYLMLIEINMIKAQVLSSSSQYEQEDKLQDIEFLSEILKCKSISELNGVLK 414 Query: 395 AA-ERLTAMYERHFVSRQSSIVDKMLRIIEADYGNSELSLGSVAAEMLYMNPDYLGKIFK 453 + ++ ++H S+ S++ K++ I+A+Y +E+SL ++ E +++P YL ++FK Sbjct: 415 MSIQKTIEEVQKHNQSKMGSLIKKVIEYIKANYSYNEISLSEIS-EKFFVSPSYLSRLFK 473 Query: 454 KVTGEKFSNYVTNYRIGKASGHILHSGDVKVFELAELYGFGGNAQYFSQVFKKVTGKTPT 513 K TG+ S+++ YRI KA +L + D+K +E+A+ G + YFS++FK+ TG +P+ Sbjct: 474 KETGKNLSDFINEYRIEKAK-ELLATTDLKTYEVADKVGI-PDPHYFSRIFKRYTGYSPS 531 Query: 514 DF 515 ++ Sbjct: 532 EY 533 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,733,129,999 Number of extensions: 104463158 Number of successful extensions: 345733 Number of sequences better than 1.0e-05: 7339 Number of HSP's gapped: 354226 Number of HSP's successfully gapped: 7713 Length of query: 519 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 379 Effective length of database: 1,741,754,103 Effective search space: 660124805037 Effective search space used: 660124805037 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)