BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0011.p (279 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DJR1.1 B1DJR1_9BACL Binding-protein-dependent transport system... 402 e-110 B3KGV3.1 B3KGV3_9BACI Binding-protein-dependent transport system... 359 2e-97 Q65KZ0.1 Q65KZ0_BACLD YesQ 355 3e-96 O31520.1 YESQ_BACSU Probable ABC transporter permease protein yesQ 352 2e-95 B9MLG6.1 B9MLG6_ANATD Binding-protein-dependent transport system... 332 2e-89 >B1DJR1.1 B1DJR1_9BACL Binding-protein-dependent transport systems inner membrane component Length = 278 Score = 402 bits (1034), Expect = e-110, Method: Compositional matrix adjust. Identities = 187/278 (67%), Positives = 231/278 (83%) Query: 1 MANNKIKWPIYHILIGGLAVIMLYPILWMVLSSFKESRLVFVTAQTLLPHPWEWGNYAKG 60 M K KWPIYHI G A++M+YP++W+++SSFK+S +F T+ +L+P W W NY+ G Sbjct: 1 MLAKKWKWPIYHIAAAGGAILMIYPVIWLLMSSFKKSETIFTTSSSLIPDKWIWTNYSDG 60 Query: 61 WEGVAGYSFGVFIKNSFVIVIVATFGAVFSSSLVAFGFARNKFIGHGLWFGIMMMTLMLP 120 W G+ G+SFG +I N+ V+V++AT GAV SS+LVAFGF R F G WF IMM+TLMLP Sbjct: 61 WAGIGGHSFGTYITNTLVLVVLATIGAVISSALVAFGFGRLNFRGKKFWFAIMMVTLMLP 120 Query: 121 ADVVLVPQYIIYTKLNWLDSIRPIVIPQFFGVPFFIFLMLQFIRTIPAELDEAATIDGCG 180 DV LVPQYI+++KL+WL+SI+PIVIP +FG PFFIFLM+QFIRT+P ELDEAATIDGCG Sbjct: 121 HDVTLVPQYILFSKLHWLNSIKPIVIPAYFGAPFFIFLMVQFIRTLPGELDEAATIDGCG 180 Query: 181 KFRLYYKIILPLIRPSMATAAIFSFYWRWEDLLGPVLYLNSPSKYTVSMGLKMFLDSESV 240 KFRL+Y+IILPLI P+MATAAIFSFYWRWEDL+GP+LYLN PS YTVSM LKM+LD+E++ Sbjct: 181 KFRLFYRIILPLIIPAMATAAIFSFYWRWEDLIGPLLYLNKPSMYTVSMALKMYLDAETL 240 Query: 241 SNWGPMFAMSVLSLTPVMLIFFIFQKQIVDGISTSGLK 278 SNWG MFAMS++SL PV IFF FQK IV+GISTSGLK Sbjct: 241 SNWGAMFAMSIVSLIPVFAIFFFFQKHIVEGISTSGLK 278 >B3KGV3.1 B3KGV3_9BACI Binding-protein-dependent transport systems inner membrane component Length = 277 Score = 359 bits (921), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 163/276 (59%), Positives = 218/276 (78%) Query: 4 NKIKWPIYHILIGGLAVIMLYPILWMVLSSFKESRLVFVTAQTLLPHPWEWGNYAKGWEG 63 K + +YH L+G A+ M YPILW+V SS K + +F TA +L+P E+ NYA GW+G Sbjct: 2 TKSRRVLYHTLVGLFALGMTYPILWLVASSLKPNHEIFTTAYSLIPSRLEFSNYATGWKG 61 Query: 64 VAGYSFGVFIKNSFVIVIVATFGAVFSSSLVAFGFARNKFIGHGLWFGIMMMTLMLPADV 123 AG +FG F KNSF+IVI++T GAV SS+LVAFG AR KF G WF MM+T+MLP DV Sbjct: 62 FAGTTFGTFFKNSFIIVIISTIGAVASSALVAFGLARTKFFGQQFWFACMMITMMLPHDV 121 Query: 124 VLVPQYIIYTKLNWLDSIRPIVIPQFFGVPFFIFLMLQFIRTIPAELDEAATIDGCGKFR 183 V+VPQY+++ K WL S +P+++PQFFG+PFFIFL++QFIRTIP ELDEAA IDGC K+ Sbjct: 122 VIVPQYVMFAKFGWLSSFKPLIVPQFFGIPFFIFLIMQFIRTIPKELDEAAKIDGCSKYG 181 Query: 184 LYYKIILPLIRPSMATAAIFSFYWRWEDLLGPVLYLNSPSKYTVSMGLKMFLDSESVSNW 243 +++++++PLI P++ T +IFSFYWRW+D + P++YLN+P KY VS+ LK+FLD ES++NW Sbjct: 182 IFFRVVVPLIVPALITCSIFSFYWRWDDFINPLIYLNNPEKYPVSLALKLFLDGESLNNW 241 Query: 244 GPMFAMSVLSLTPVMLIFFIFQKQIVDGISTSGLKG 279 G MFAM+ LSL PV+++FFIFQK IV+GIST+GLKG Sbjct: 242 GGMFAMATLSLLPVVIVFFIFQKYIVEGISTTGLKG 277 >Q65KZ0.1 Q65KZ0_BACLD YesQ Length = 297 Score = 355 bits (910), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 162/269 (60%), Positives = 215/269 (79%) Query: 10 IYHILIGGLAVIMLYPILWMVLSSFKESRLVFVTAQTLLPHPWEWGNYAKGWEGVAGYSF 69 ++HI GLA+I+LYP++W++ SSFKES +F T+ +L+P P NY +GW+G+AG F Sbjct: 29 VFHITTAGLAIILLYPVIWLIASSFKESASIFATSHSLIPDPLILSNYTEGWKGIAGQPF 88 Query: 70 GVFIKNSFVIVIVATFGAVFSSSLVAFGFARNKFIGHGLWFGIMMMTLMLPADVVLVPQY 129 FIKNS +IV ++T GAV SS+ +A+GFAR F G WF MM+T+MLP +V+++PQY Sbjct: 89 ITFIKNSLIIVGLSTAGAVLSSAFIAYGFARIPFKGKAFWFSCMMVTMMLPHEVLMIPQY 148 Query: 130 IIYTKLNWLDSIRPIVIPQFFGVPFFIFLMLQFIRTIPAELDEAATIDGCGKFRLYYKII 189 II+ KL+WL+S +PIV+PQFFG FFIFLM+QFIRTIP ELDEAA IDGC + ++++II Sbjct: 149 IIFAKLDWLNSFKPIVVPQFFGHAFFIFLMIQFIRTIPVELDEAAKIDGCSRLGIFFRII 208 Query: 190 LPLIRPSMATAAIFSFYWRWEDLLGPVLYLNSPSKYTVSMGLKMFLDSESVSNWGPMFAM 249 LPLI P++AT+AIFSFYW+WE+L+ P+LYLN P Y VS+ LK+FLD+E+ SNWG MFAM Sbjct: 209 LPLIAPALATSAIFSFYWKWEELINPLLYLNKPELYPVSLALKLFLDTETASNWGAMFAM 268 Query: 250 SVLSLTPVMLIFFIFQKQIVDGISTSGLK 278 SV+SL PV+L+FF+FQK IV GIS SGLK Sbjct: 269 SVVSLVPVILVFFVFQKSIVQGISMSGLK 297 >O31520.1 YESQ_BACSU Probable ABC transporter permease protein yesQ Length = 296 Score = 352 bits (904), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 163/269 (60%), Positives = 217/269 (80%) Query: 10 IYHILIGGLAVIMLYPILWMVLSSFKESRLVFVTAQTLLPHPWEWGNYAKGWEGVAGYSF 69 ++H+ LAV++LYP++W+ +SSFKES +F T+ +L+P P+ NYA+GW+G+AG F Sbjct: 28 LFHVFTATLAVLLLYPVIWLFVSSFKESASIFTTSHSLIPDPFILSNYAEGWKGIAGQPF 87 Query: 70 GVFIKNSFVIVIVATFGAVFSSSLVAFGFARNKFIGHGLWFGIMMMTLMLPADVVLVPQY 129 FIKNS +IV ++T GAV SS+++A+GFAR F G WF MM TLMLP +V+++PQY Sbjct: 88 LTFIKNSAIIVGLSTIGAVMSSAVIAYGFARIPFKGKKFWFACMMGTLMLPHEVLMIPQY 147 Query: 130 IIYTKLNWLDSIRPIVIPQFFGVPFFIFLMLQFIRTIPAELDEAATIDGCGKFRLYYKII 189 I++ KL+WL+S +PIV+PQFFG FFIFLM+QFIRTIP ELDEAA IDGCG+F +++II Sbjct: 148 IMFAKLDWLNSFKPIVVPQFFGHAFFIFLMIQFIRTIPEELDEAARIDGCGRFACFWRII 207 Query: 190 LPLIRPSMATAAIFSFYWRWEDLLGPVLYLNSPSKYTVSMGLKMFLDSESVSNWGPMFAM 249 LPLI P++AT+AIFSFYW+WE+L+ P+LYLN P Y VS+ LK+FLD+ES SNWG MFAM Sbjct: 208 LPLIAPALATSAIFSFYWKWEELIQPLLYLNKPELYPVSLALKLFLDTESASNWGAMFAM 267 Query: 250 SVLSLTPVMLIFFIFQKQIVDGISTSGLK 278 S +SL PV+L+FF+FQK IV GIST+GLK Sbjct: 268 SAVSLLPVILVFFLFQKYIVQGISTTGLK 296 >B9MLG6.1 B9MLG6_ANATD Binding-protein-dependent transport systems inner membrane component Length = 280 Score = 332 bits (852), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 154/277 (55%), Positives = 205/277 (74%) Query: 3 NNKIKWPIYHILIGGLAVIMLYPILWMVLSSFKESRLVFVTAQTLLPHPWEWGNYAKGWE 62 +K ++H+L IMLYP+LWM SSFKE+ +F+ A LLP W + NY GW Sbjct: 4 TKTMKALLFHLLTILFGYIMLYPLLWMFFSSFKENSEIFLNAHELLPKKWLFKNYIDGWR 63 Query: 63 GVAGYSFGVFIKNSFVIVIVATFGAVFSSSLVAFGFARNKFIGHGLWFGIMMMTLMLPAD 122 G AGY F VF KNSF++ I+ T GAV SS++VA+GFAR KF G G WFG M++T++LP Sbjct: 64 GFAGYPFSVFFKNSFIVTIIGTVGAVISSAIVAYGFARCKFKGKGFWFGCMIITMLLPYQ 123 Query: 123 VVLVPQYIIYTKLNWLDSIRPIVIPQFFGVPFFIFLMLQFIRTIPAELDEAATIDGCGKF 182 VV++PQYI++ K+ W+++ +P+++P F G PFFIFLM+QFIR IP ELDEAA IDGC K+ Sbjct: 124 VVMIPQYIMFQKMGWVNTFKPLLVPAFLGQPFFIFLMIQFIRGIPNELDEAAKIDGCSKY 183 Query: 183 RLYYKIILPLIRPSMATAAIFSFYWRWEDLLGPVLYLNSPSKYTVSMGLKMFLDSESVSN 242 ++ +IILPLI P++ T+AIFSF WRW+D LGP+LYL+ P YTVS+GL+MF D +VSN Sbjct: 184 SIFTRIILPLISPALITSAIFSFLWRWDDFLGPLLYLSKPELYTVSLGLRMFSDPTAVSN 243 Query: 243 WGPMFAMSVLSLTPVMLIFFIFQKQIVDGISTSGLKG 279 WG FAM+ LSL P +IF FQ+ +V+GI T+GLKG Sbjct: 244 WGAAFAMATLSLVPSFIIFIFFQRYLVEGIVTTGLKG 280 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.144 0.466 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,622,051,538 Number of extensions: 64442591 Number of successful extensions: 239049 Number of sequences better than 1.0e-05: 6259 Number of HSP's gapped: 228921 Number of HSP's successfully gapped: 6260 Length of query: 279 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 145 Effective length of database: 1,798,280,193 Effective search space: 260750627985 Effective search space used: 260750627985 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)