BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0009.p (287 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9K7Y2.1 Q9K7Y2_BACHD Magnesium (Mg2+) transporter 291 5e-77 C2W757.1 C2W757_BACCE MgtC/SapB transporter 241 6e-62 C3BJE5.1 C3BJE5_9BACI MgtC/SapB transporter 240 1e-61 C3B2J8.1 C3B2J8_BACMY MgtC/SapB transporter 240 1e-61 C3AKM3.1 C3AKM3_BACMY MgtC/SapB transporter 240 1e-61 >Q9K7Y2.1 Q9K7Y2_BACHD Magnesium (Mg2+) transporter Length = 232 Score = 291 bits (745), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 137/234 (58%), Positives = 184/234 (78%), Gaps = 5/234 (2%) Query: 55 ESIIKLLVAMLFGLFIGIDRQLKQKPLGIRTSMVISIASCLVTLVSIHAYDKFGGPDHPN 114 E ++KL +A+ FGL IGIDRQLK KPLG++TSMVI +ASCLVT+VS+ ++ +F P N Sbjct: 3 ELLMKLSIALFFGLLIGIDRQLKHKPLGLKTSMVICVASCLVTIVSVESFHRFATPMFNN 62 Query: 115 MDPMRLAAQIVSGIGFLGAGVILRRGGDAISGLTSAALIWTASGIGIAVGAGFYVEAGYA 174 MDPMRLAAQIVSG+GFLGAGVILR+ D ISGLT+AA+IW ASG+GIAVGAGFY+EAGY Sbjct: 63 MDPMRLAAQIVSGVGFLGAGVILRKRNDVISGLTTAAMIWAASGLGIAVGAGFYIEAGYM 122 Query: 175 VVLLMFAVNAVPHLIKLIGPEVLNKHEISVKIIMEHNYVLTDVIQKVEERHVVKTRKTKK 234 VVLLM A+N P L+K +GP L + +++VK++ME N +T++IQ +E KT KK Sbjct: 123 VVLLMLAINVFPQLVKKVGPSSLRQRDVAVKMVMEPNMRMTELIQSIER----KTSMAKK 178 Query: 235 NGRT-IRRMKIKDLEDGRQMIDMVISAPDREYATEIYYDVKKIEHVISVEVEQL 287 IR +K+KDLE+G Q +++++SAP+++Y TEIYY +KKI+HV++V+VE L Sbjct: 179 GSDIRIRHLKLKDLENGNQQVELILSAPEKQYTTEIYYLIKKIDHVLTVDVEHL 232 >C2W757.1 C2W757_BACCE MgtC/SapB transporter Length = 225 Score = 241 bits (615), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 110/216 (50%), Positives = 164/216 (75%), Gaps = 11/216 (5%) Query: 70 IGIDRQLKQKPLGIRTSMVISIASCLVTLVSIHAYDKFGGPDHPNMDPMRLAAQIVSGIG 129 IGIDRQLK KPLG++TSMVIS+ASCL+T+VSI + + + P H NMDPMRLAAQIVSG+G Sbjct: 19 IGIDRQLKNKPLGVKTSMVISVASCLITMVSIESVNVYSSPGHTNMDPMRLAAQIVSGVG 78 Query: 130 FLGAGVILRRGGDAISGLTSAALIWTASGIGIAVGAGFYVEAGYAVVLLMFAVNAVPHLI 189 FLGAGVILRR D ISGLT+A+++W AS +GIA+GAGFY++A A++L++ A+N +PHL+ Sbjct: 79 FLGAGVILRRNNDVISGLTTASMVWAASALGIAIGAGFYIQAIVAMILIILAINVLPHLV 138 Query: 190 KLIGPEVLNKHEISVKIIMEHNYVLTDVIQKVEERHVVKTRKTKKNGRTIRRMKIKDLED 249 K+ GP L + ++++KII++ + L + ++++ ++ ++R+KIKD++ Sbjct: 139 KIAGPYSLRQKDVAIKIIVKEHRELDGIFKQIKNLNM-----------QVKRVKIKDIDS 187 Query: 250 GRQMIDMVISAPDREYATEIYYDVKKIEHVISVEVE 285 Q ++MVISAP+ Y TE+Y +K+I+H++SV VE Sbjct: 188 ESQQLEMVISAPEDLYTTELYSSLKEIDHIVSVAVE 223 >C3BJE5.1 C3BJE5_9BACI MgtC/SapB transporter Length = 225 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 110/216 (50%), Positives = 164/216 (75%), Gaps = 11/216 (5%) Query: 70 IGIDRQLKQKPLGIRTSMVISIASCLVTLVSIHAYDKFGGPDHPNMDPMRLAAQIVSGIG 129 IGIDRQLK KPLG++TSMVIS+ASCL+T+VSI + + + P H NMDPMRLAAQIVSG+G Sbjct: 19 IGIDRQLKNKPLGVKTSMVISVASCLITMVSIESVNVYSSPGHTNMDPMRLAAQIVSGVG 78 Query: 130 FLGAGVILRRGGDAISGLTSAALIWTASGIGIAVGAGFYVEAGYAVVLLMFAVNAVPHLI 189 FLGAGVILRR D ISGLT+A+++W AS +GIA+GAGFY++A A++L++ A+N +PHL+ Sbjct: 79 FLGAGVILRRNNDVISGLTTASMVWAASALGIAIGAGFYIQAIVAMILIILAINVLPHLV 138 Query: 190 KLIGPEVLNKHEISVKIIMEHNYVLTDVIQKVEERHVVKTRKTKKNGRTIRRMKIKDLED 249 K+ GP L + ++++KII++ + L + ++++ ++ ++R+KIKD++ Sbjct: 139 KIAGPYSLRQRDLAIKIIVKEHRELDGIFKQIKNLNM-----------QVKRVKIKDIDS 187 Query: 250 GRQMIDMVISAPDREYATEIYYDVKKIEHVISVEVE 285 Q ++MVI AP+ Y TE+Y +K+I+H++SVEVE Sbjct: 188 ESQQLEMVILAPEDLYTTELYSSLKEIDHIVSVEVE 223 >C3B2J8.1 C3B2J8_BACMY MgtC/SapB transporter Length = 225 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 110/216 (50%), Positives = 164/216 (75%), Gaps = 11/216 (5%) Query: 70 IGIDRQLKQKPLGIRTSMVISIASCLVTLVSIHAYDKFGGPDHPNMDPMRLAAQIVSGIG 129 IGIDRQLK KPLG++TSMVIS+ASCL+T+VSI + + + P H NMDPMRLAAQIVSG+G Sbjct: 19 IGIDRQLKNKPLGVKTSMVISVASCLITMVSIESVNVYSSPGHTNMDPMRLAAQIVSGVG 78 Query: 130 FLGAGVILRRGGDAISGLTSAALIWTASGIGIAVGAGFYVEAGYAVVLLMFAVNAVPHLI 189 FLGAGVILRR D ISGLT+A+++W AS +GIA+GAGFY++A A++L++ A+N +PHL+ Sbjct: 79 FLGAGVILRRNNDVISGLTTASMVWAASALGIAIGAGFYIQAIVAMILIILAINVLPHLV 138 Query: 190 KLIGPEVLNKHEISVKIIMEHNYVLTDVIQKVEERHVVKTRKTKKNGRTIRRMKIKDLED 249 K+ GP L + ++++KII++ + L + ++++ ++ ++R+KIKD++ Sbjct: 139 KIAGPYSLRQRDLAIKIIVKEHRELDGIFKQIKNLNM-----------QVKRVKIKDIDS 187 Query: 250 GRQMIDMVISAPDREYATEIYYDVKKIEHVISVEVE 285 Q ++MVI AP+ Y TE+Y +K+I+H++SVEVE Sbjct: 188 ESQQLEMVILAPEDLYTTELYSSLKEIDHIVSVEVE 223 >C3AKM3.1 C3AKM3_BACMY MgtC/SapB transporter Length = 225 Score = 240 bits (613), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 110/216 (50%), Positives = 164/216 (75%), Gaps = 11/216 (5%) Query: 70 IGIDRQLKQKPLGIRTSMVISIASCLVTLVSIHAYDKFGGPDHPNMDPMRLAAQIVSGIG 129 IGIDRQLK KPLG++TSMVIS+ASCL+T+VSI + + + P H NMDPMRLAAQIVSG+G Sbjct: 19 IGIDRQLKNKPLGVKTSMVISVASCLITMVSIESVNVYSSPGHTNMDPMRLAAQIVSGVG 78 Query: 130 FLGAGVILRRGGDAISGLTSAALIWTASGIGIAVGAGFYVEAGYAVVLLMFAVNAVPHLI 189 FLGAGVILRR D ISGLT+A+++W AS +GIA+GAGFY++A A++L++ A+N +PHL+ Sbjct: 79 FLGAGVILRRNNDVISGLTTASMVWAASALGIAIGAGFYIQAIVAMILIILAINVLPHLV 138 Query: 190 KLIGPEVLNKHEISVKIIMEHNYVLTDVIQKVEERHVVKTRKTKKNGRTIRRMKIKDLED 249 K+ GP L + ++++KII++ + L + ++++ ++ ++R+KIKD++ Sbjct: 139 KIAGPYSLRQRDLAIKIIVKEHRELDGIFKQIKNLNM-----------QVKRVKIKDIDS 187 Query: 250 GRQMIDMVISAPDREYATEIYYDVKKIEHVISVEVE 285 Q ++MVI AP+ Y TE+Y +K+I+H++SVEVE Sbjct: 188 ESQQLEMVILAPEDLYTTELYSSLKEIDHIVSVEVE 223 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.141 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,654,388,714 Number of extensions: 68032505 Number of successful extensions: 270791 Number of sequences better than 1.0e-05: 1229 Number of HSP's gapped: 268853 Number of HSP's successfully gapped: 1230 Length of query: 287 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 153 Effective length of database: 1,798,280,193 Effective search space: 275136869529 Effective search space used: 275136869529 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 130 (54.7 bits)