BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0008.p (328 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D5U0.1 B1D5U0_9BACL Aldose 1-epimerase 467 e-130 B3KGQ3.1 B3KGQ3_9BACI Aldose 1-epimerase 455 e-126 B3KC38.1 B3KC38_9BACI Aldose 1-epimerase 442 e-122 B1D6A2.1 B1D6A2_9BACL Aldose 1-epimerase 420 e-116 B7DP40.1 B7DP40_9BACL Aldose 1-epimerase 326 1e-87 >B1D5U0.1 B1D5U0_9BACL Aldose 1-epimerase Length = 332 Score = 467 bits (1201), Expect = e-130, Method: Compositional matrix adjust. Identities = 212/301 (70%), Positives = 249/301 (82%) Query: 5 AYEGLYEGEAAVWLKAGRYEAAILPRIGGNLICFRDTENGYRFLHEPGAEEMEAFKANPG 64 A EGL+ GE A+WL+ G YEAA+LP IGGNLI FRD E YRFLHEP EEME+FKA P Sbjct: 6 ANEGLFHGERAIWLRFGPYEAALLPEIGGNLIAFRDVEKEYRFLHEPTPEEMESFKARPM 65 Query: 65 IHGIPVLFPPNRYEDGEFPWNGQTYRFPVNEEATGNHLHGFLHTAAWEVVEFGSSVTESF 124 IHGIPVLFPPNRYEDG+FPW G+ ++F VNE ATGNHLHGFL+ W+V +FG++ TES+ Sbjct: 66 IHGIPVLFPPNRYEDGKFPWEGKVHQFDVNEPATGNHLHGFLYQTPWQVEDFGTTKTESY 125 Query: 125 VTVAVKVDENHPSYQYLPFKYTVKLRYSLGEAGLSQQLLVHNEGEELMPCLLAFHTAINA 184 V V+V+VDENHPSY PF YT++LRYSL E GL QQ+ V N+GEE+MPCLLAFHT++NA Sbjct: 126 VVVSVQVDENHPSYASFPFNYTIRLRYSLSENGLLQQVTVRNDGEEVMPCLLAFHTSVNA 185 Query: 185 PFAPGSTAQDYRVKLTIGNRWELSDRMLPTGSFQELTADEIALRDEGLYPFYAPMDNHYT 244 PF PG AQDYR+ +T+G RWEL++RMLPTG +Q L +E +RD G+YPF+ MDNHYT Sbjct: 186 PFVPGGQAQDYRIHMTLGERWELNERMLPTGQYQPLKEEEQLMRDSGVYPFFEAMDNHYT 245 Query: 245 AAAQNGRNRMELTDSKAGVTLVYDVGTSYKQWMIWNNSATEGFFCPEPQINLVNAPKVDL 304 A QNGRN MELTD+KAG+ LVYDVGTSYKQWMIWNN+ATEGFFCPEPQINLVNAP VDL Sbjct: 246 ARPQNGRNLMELTDTKAGIKLVYDVGTSYKQWMIWNNNATEGFFCPEPQINLVNAPNVDL 305 Query: 305 P 305 P Sbjct: 306 P 306 >B3KGQ3.1 B3KGQ3_9BACI Aldose 1-epimerase Length = 330 Score = 455 bits (1170), Expect = e-126, Method: Compositional matrix adjust. Identities = 211/305 (69%), Positives = 242/305 (79%) Query: 1 MSITAYEGLYEGEAAVWLKAGRYEAAILPRIGGNLICFRDTENGYRFLHEPGAEEMEAFK 60 M+ AYEG Y+GE AVWL+ G YEAAILP IGGNLI FRD +GYRFL EP EMEAFK Sbjct: 1 MNHKAYEGSYQGERAVWLQHGPYEAAILPEIGGNLIAFRDNVSGYRFLREPEENEMEAFK 60 Query: 61 ANPGIHGIPVLFPPNRYEDGEFPWNGQTYRFPVNEEATGNHLHGFLHTAAWEVVEFGSSV 120 A+PG+HGIPVLFPPNRYEDG FPWNGQTY+ PVNEE TGNHLHGFLHT W V ++GSS Sbjct: 61 ASPGVHGIPVLFPPNRYEDGRFPWNGQTYQLPVNEEETGNHLHGFLHTTPWSVEDYGSSE 120 Query: 121 TESFVTVAVKVDENHPSYQYLPFKYTVKLRYSLGEAGLSQQLLVHNEGEELMPCLLAFHT 180 TES+V V+V VDE+HP Y LP +T +LRY+L + GL+Q + + N+G MPCLLAFHT Sbjct: 121 TESYVVVSVTVDEHHPVYAMLPHHFTFRLRYTLNQDGLAQHVFIRNQGTSSMPCLLAFHT 180 Query: 181 AINAPFAPGSTAQDYRVKLTIGNRWELSDRMLPTGSFQELTADEIALRDEGLYPFYAPMD 240 AINAPFAP STA D V++TIG RWE+SDRMLPTG FQ LTA+E LR G+ P++ MD Sbjct: 181 AINAPFAPESTADDCVVRITIGERWEMSDRMLPTGKFQALTAEEKLLRTSGVNPYFDSMD 240 Query: 241 NHYTAAAQNGRNRMELTDSKAGVTLVYDVGTSYKQWMIWNNSATEGFFCPEPQINLVNAP 300 NHYTA QNGRNRMELTD+K G T VYDVG SYKQWM+WN+ A+ FFCPEPQINLVNAP Sbjct: 241 NHYTAVPQNGRNRMELTDTKLGKTFVYDVGNSYKQWMVWNSKASRKFFCPEPQINLVNAP 300 Query: 301 KVDLP 305 DLP Sbjct: 301 NTDLP 305 >B3KC38.1 B3KC38_9BACI Aldose 1-epimerase Length = 334 Score = 442 bits (1137), Expect = e-122, Method: Compositional matrix adjust. Identities = 204/302 (67%), Positives = 242/302 (80%) Query: 4 TAYEGLYEGEAAVWLKAGRYEAAILPRIGGNLICFRDTENGYRFLHEPGAEEMEAFKANP 63 AYEG+Y E AV+L+AG YEA +LP IGGNLI FRD E GYRFLHEP EEM AFKA P Sbjct: 5 NAYEGVYHNEKAVFLRAGAYEAVMLPDIGGNLIAFRDIEKGYRFLHEPTPEEMPAFKARP 64 Query: 64 GIHGIPVLFPPNRYEDGEFPWNGQTYRFPVNEEATGNHLHGFLHTAAWEVVEFGSSVTES 123 IHGIPVLFPPNRYEDG F WNGQ ++ PVNE+ATG+HLHGFL+ W V E+G + E+ Sbjct: 65 MIHGIPVLFPPNRYEDGRFRWNGQIHQLPVNEDATGHHLHGFLYNIPWVVDEYGHTGQEA 124 Query: 124 FVTVAVKVDENHPSYQYLPFKYTVKLRYSLGEAGLSQQLLVHNEGEELMPCLLAFHTAIN 183 +VTV+V+VDE HP +++ PF++ ++LRY L + GLSQ++L+ N G E MPCLLAFHT++N Sbjct: 125 YVTVSVRVDEQHPVFEHFPFRFRIQLRYGLSDQGLSQRVLITNMGTEAMPCLLAFHTSVN 184 Query: 184 APFAPGSTAQDYRVKLTIGNRWELSDRMLPTGSFQELTADEIALRDEGLYPFYAPMDNHY 243 APFA G A+DYR+KLT RWEL RMLPTGS QEL+A+E A++ G+YPF+ MDNHY Sbjct: 185 APFAEGGDARDYRLKLTALKRWELDGRMLPTGSHQELSANERAMQGAGVYPFFESMDNHY 244 Query: 244 TAAAQNGRNRMELTDSKAGVTLVYDVGTSYKQWMIWNNSATEGFFCPEPQINLVNAPKVD 303 TA QNGRNRMELTD VTLVYDVGTSYKQWMIWNN ATEGFFCPEPQINLVNAP +D Sbjct: 245 TAVPQNGRNRMELTDEAGKVTLVYDVGTSYKQWMIWNNQATEGFFCPEPQINLVNAPNMD 304 Query: 304 LP 305 +P Sbjct: 305 MP 306 >B1D6A2.1 B1D6A2_9BACL Aldose 1-epimerase Length = 334 Score = 420 bits (1080), Expect = e-116, Method: Compositional matrix adjust. Identities = 189/301 (62%), Positives = 237/301 (78%) Query: 5 AYEGLYEGEAAVWLKAGRYEAAILPRIGGNLICFRDTENGYRFLHEPGAEEMEAFKANPG 64 A+E Y+GE AVWL+ G YEAA+LPR+G NLI FRDT GY L EP +EMEAFKANPG Sbjct: 7 AFEEQYKGEPAVWLQWGSYEAAVLPRVGANLIAFRDTSKGYHILREPAEQEMEAFKANPG 66 Query: 65 IHGIPVLFPPNRYEDGEFPWNGQTYRFPVNEEATGNHLHGFLHTAAWEVVEFGSSVTESF 124 IHGIPVLFPPNRYEDG F +NG+TY FP+NE TGNHLHGF HTA W V ++G + TES+ Sbjct: 67 IHGIPVLFPPNRYEDGTFDFNGKTYTFPINEPKTGNHLHGFAHTAVWTVEDYGVNKTESY 126 Query: 125 VTVAVKVDENHPSYQYLPFKYTVKLRYSLGEAGLSQQLLVHNEGEELMPCLLAFHTAINA 184 V++ + VDE HP ++YLP +T++LRY+L + GL Q + VHNEG++ MPC++AFHTA+NA Sbjct: 127 VSLKLSVDEKHPIFEYLPHAFTLRLRYALNDTGLLQHISVHNEGQDAMPCMVAFHTAVNA 186 Query: 185 PFAPGSTAQDYRVKLTIGNRWELSDRMLPTGSFQELTADEIALRDEGLYPFYAPMDNHYT 244 PFAP ST +D +TIG RWE+S+RMLPTG F L+ E A++ G+ ++ MDNHYT Sbjct: 187 PFAPNSTPEDCSFTMTIGKRWEMSERMLPTGQFLPLSEGEQAIQTTGVPTYWEAMDNHYT 246 Query: 245 AAAQNGRNRMELTDSKAGVTLVYDVGTSYKQWMIWNNSATEGFFCPEPQINLVNAPKVDL 304 A +NGRN+M LTDS+ V LVYD GT++KQWM+WNN+AT+GFFCPEPQ+NLVNAP VDL Sbjct: 247 AEPRNGRNQMVLTDSREQVALVYDAGTAFKQWMVWNNNATKGFFCPEPQLNLVNAPNVDL 306 Query: 305 P 305 P Sbjct: 307 P 307 >B7DP40.1 B7DP40_9BACL Aldose 1-epimerase Length = 329 Score = 326 bits (836), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 159/303 (52%), Positives = 198/303 (65%), Gaps = 2/303 (0%) Query: 3 ITAYEGLYEGEAAVWLKAGRYEAAILPRIGGNLICFRDTENGYRFLHEPGAEEMEAFKAN 62 + A E Y GE A+ L GRYEA +LP G NL+ RDT G+RFL EP AE ME F+ Sbjct: 1 MPAVETTYGGERAIRLTHGRYEAYLLPGWG-NLVALRDTARGFRFLREPEAE-MEEFRKA 58 Query: 63 PGIHGIPVLFPPNRYEDGEFPWNGQTYRFPVNEEATGNHLHGFLHTAAWEVVEFGSSVTE 122 PG +GIPVL+PPNRY DGEF G+ Y PVNEEAT NHLHGF W VV+ G Sbjct: 59 PGRYGIPVLYPPNRYRDGEFTIAGRAYHLPVNEEATHNHLHGFFMRIEWPVVDMGEDEGG 118 Query: 123 SFVTVAVKVDENHPSYQYLPFKYTVKLRYSLGEAGLSQQLLVHNEGEELMPCLLAFHTAI 182 ++V +A V E HP Y++ P + +RY L +AGL Q++ + N G E MP +L FHTA+ Sbjct: 119 AYVEMAHDVGEGHPVYEHWPHTFRFAIRYELSDAGLVQRVRIDNRGGEPMPVMLGFHTAV 178 Query: 183 NAPFAPGSTAQDYRVKLTIGNRWELSDRMLPTGSFQELTADEIALRDEGLYPFYAPMDNH 242 N PF+ S+A ++LTIG RWEL DR LPTG FQ L +E + G PFY PMDNH Sbjct: 179 NVPFSKASSADACSIQLTIGERWELDDRKLPTGRFQPLNENERKMPTGGADPFYEPMDNH 238 Query: 243 YTAAAQNGRNRMELTDSKAGVTLVYDVGTSYKQWMIWNNSATEGFFCPEPQINLVNAPKV 302 YTA ++G NRM LTD++ G+ VYDV Y+ WM+WNN+ FFCPEPQ N+VNAP + Sbjct: 239 YTARPRDGHNRMVLTDARLGLAFVYDVDLKYRHWMVWNNNRCGTFFCPEPQTNMVNAPNM 298 Query: 303 DLP 305 DLP Sbjct: 299 DLP 301 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,086,649,004 Number of extensions: 94251113 Number of successful extensions: 170330 Number of sequences better than 1.0e-05: 115 Number of HSP's gapped: 170319 Number of HSP's successfully gapped: 115 Length of query: 328 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 192 Effective length of database: 1,779,438,163 Effective search space: 341652127296 Effective search space used: 341652127296 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)