BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0004.p (155 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9K7B8.1 Q9K7B8_BACHD Sugar ABC transporter (Sugar-binding protein) 181 2e-44 A4IPB0.1 A4IPB0_GEOTN ABC transporter sugar-binding protein 180 4e-44 B4BMA4.1 B4BMA4_9BACI ABC transporter sugar-binding protein 180 4e-44 B3K9S5.1 B3K9S5_9BACI Periplasmic binding protein/LacI transcrip... 177 3e-43 B3EYL5.1 B3EYL5_BACST Arabinose binding protein 177 4e-43 >Q9K7B8.1 Q9K7B8_BACHD Sugar ABC transporter (Sugar-binding protein) Length = 335 Score = 181 bits (458), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 86/129 (66%), Positives = 104/129 (80%) Query: 1 MVTFQSGIDYWKSVLKGFEDAAEELNVSVEYHGSTQHNASEQMTVLEQAIAKKPAGIAIS 60 M+TFQSG+DYWK LKGFEDAA+ LNV+VEY G+ Q++ EQ+TVLEQAIAK PAGIAIS Sbjct: 47 MITFQSGMDYWKRCLKGFEDAAQALNVTVEYRGAAQYDIQEQITVLEQAIAKNPAGIAIS 106 Query: 61 AVNSKLLTATINKAVESGIPVVLFDSGAPDSKAYSFLGTDNFNAGAEAARKMAELXXXXS 120 A++ LT TINKAV++GIP+VLFDSGAPDS A+SFLGT+N+NAG AA KMAEL Sbjct: 107 AIDPVELTDTINKAVDAGIPIVLFDSGAPDSHAHSFLGTNNYNAGMNAAYKMAELLDGEG 166 Query: 121 PAAKVRLPS 129 A + LP+ Sbjct: 167 EVAVITLPN 175 >A4IPB0.1 A4IPB0_GEOTN ABC transporter sugar-binding protein Length = 333 Score = 180 bits (457), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 85/115 (73%), Positives = 99/115 (86%) Query: 1 MVTFQSGIDYWKSVLKGFEDAAEELNVSVEYHGSTQHNASEQMTVLEQAIAKKPAGIAIS 60 M+TFQSG+DYWK LKGFEDAAEELNVSVEY G+TQ++ +EQ+TVLEQ IA+KPAGIAIS Sbjct: 49 MITFQSGMDYWKRCLKGFEDAAEELNVSVEYRGATQYDVNEQVTVLEQVIARKPAGIAIS 108 Query: 61 AVNSKLLTATINKAVESGIPVVLFDSGAPDSKAYSFLGTDNFNAGAEAARKMAEL 115 A+N LT TINKAVE GIPVVLFDS A SKA+SFLGT+N+NAG AA +MA+L Sbjct: 109 AINPTALTKTINKAVEKGIPVVLFDSNASGSKAFSFLGTNNYNAGVTAAHEMAKL 163 >B4BMA4.1 B4BMA4_9BACI ABC transporter sugar-binding protein Length = 333 Score = 180 bits (457), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 85/115 (73%), Positives = 99/115 (86%) Query: 1 MVTFQSGIDYWKSVLKGFEDAAEELNVSVEYHGSTQHNASEQMTVLEQAIAKKPAGIAIS 60 M+TFQSG+DYWK LKGFEDAAEELNVSVEY G+TQ++ +EQ+TVLEQ IA+KPAGIAIS Sbjct: 49 MITFQSGMDYWKRCLKGFEDAAEELNVSVEYRGATQYDVNEQVTVLEQVIARKPAGIAIS 108 Query: 61 AVNSKLLTATINKAVESGIPVVLFDSGAPDSKAYSFLGTDNFNAGAEAARKMAEL 115 A+N LT TINKAVE GIPVVLFDS A SKA+SFLGT+N+NAG AA +MA+L Sbjct: 109 AINPTALTKTINKAVEKGIPVVLFDSNASGSKAFSFLGTNNYNAGVTAAHEMAKL 163 >B3K9S5.1 B3K9S5_9BACI Periplasmic binding protein/LacI transcriptional regulator Length = 335 Score = 177 bits (449), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 83/131 (63%), Positives = 104/131 (79%) Query: 1 MVTFQSGIDYWKSVLKGFEDAAEELNVSVEYHGSTQHNASEQMTVLEQAIAKKPAGIAIS 60 MVTFQSG++YWK++LKGFED + L V+V+Y GSTQ++ EQ+TVLEQ IAK+PAGIA+S Sbjct: 47 MVTFQSGMEYWKNILKGFEDGGDALGVTVDYRGSTQYDVEEQITVLEQVIAKRPAGIALS 106 Query: 61 AVNSKLLTATINKAVESGIPVVLFDSGAPDSKAYSFLGTDNFNAGAEAARKMAELXXXXS 120 A++SK LT+TINKAV++GIPVVLFD+ APDSKAYSFL T+N+NAG AA KMA+L Sbjct: 107 AIDSKALTSTINKAVDAGIPVVLFDADAPDSKAYSFLATNNYNAGVAAADKMAQLLGREG 166 Query: 121 PAAKVRLPSLQ 131 V P Q Sbjct: 167 EIGIVTQPGQQ 177 >B3EYL5.1 B3EYL5_BACST Arabinose binding protein Length = 335 Score = 177 bits (448), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 86/128 (67%), Positives = 101/128 (78%) Query: 1 MVTFQSGIDYWKSVLKGFEDAAEELNVSVEYHGSTQHNASEQMTVLEQAIAKKPAGIAIS 60 MVTFQSG+DYWK LKGFEDAAE LNVSVEY G+TQ++ +EQ+TVLEQ IA+KPAGIAIS Sbjct: 51 MVTFQSGMDYWKRCLKGFEDAAESLNVSVEYRGATQYDVNEQVTVLEQVIARKPAGIAIS 110 Query: 61 AVNSKLLTATINKAVESGIPVVLFDSGAPDSKAYSFLGTDNFNAGAEAARKMAELXXXXS 120 A+N LT TINKAVE GIPVVLFDS A SKA+SFLGT+N++AG AA +MA+L Sbjct: 111 AINPTALTKTINKAVEEGIPVVLFDSNASGSKAFSFLGTNNYSAGVTAAHEMAKLLKSEG 170 Query: 121 PAAKVRLP 128 A + P Sbjct: 171 KVAVITSP 178 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.312 0.125 0.338 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 766,098,808 Number of extensions: 25292711 Number of successful extensions: 66938 Number of sequences better than 1.0e-05: 362 Number of HSP's gapped: 67155 Number of HSP's successfully gapped: 363 Length of query: 155 Length of database: 3,060,696,203 Length adjustment: 116 Effective length of query: 39 Effective length of database: 1,967,858,463 Effective search space: 76746480057 Effective search space used: 76746480057 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 126 (53.1 bits)