BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0003.p (128 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q9K7B8.1 Q9K7B8_BACHD Sugar ABC transporter (Sugar-binding protein) 155 1e-36 Q5KYN8.1 Q5KYN8_GEOKA Sugar ABC transporter (Sugar-binding protein) 148 1e-34 B3EYL5.1 B3EYL5_BACST Arabinose binding protein 146 5e-34 A4IPB0.1 A4IPB0_GEOTN ABC transporter sugar-binding protein 143 4e-33 B4BMA4.1 B4BMA4_9BACI ABC transporter sugar-binding protein 143 4e-33 >Q9K7B8.1 Q9K7B8_BACHD Sugar ABC transporter (Sugar-binding protein) Length = 335 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 77/125 (61%), Positives = 94/125 (75%), Gaps = 2/125 (1%) Query: 3 SRQAAEELLSQYPKLGGIFATESNGGIGVAEAVQAQQGSGSTLKIISFDTDKGTLDLVKE 62 SR+ A +LL YP L GIFATE+NGG+GV +AV+ + +G ++IISFDTDKGTLDLV E Sbjct: 212 SRRVAHQLLEDYPNLAGIFATEANGGVGVGDAVRLESRAGE-IQIISFDTDKGTLDLVDE 270 Query: 63 GRIAATMAQGTWNMGYWSLTELFHLHRDLQEDPDVYEGSKPLPVPDKVDTGIDVVTRANV 122 G I+AT+AQGTWNMGYWSLT LFHLH L E P + + + P+P VDTGI +VT NV Sbjct: 271 GIISATLAQGTWNMGYWSLTYLFHLHHGLTE-PQILQTREEAPLPLYVDTGITIVTDENV 329 Query: 123 DNYYA 127 D YYA Sbjct: 330 DYYYA 334 >Q5KYN8.1 Q5KYN8_GEOKA Sugar ABC transporter (Sugar-binding protein) Length = 335 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 78/128 (60%), Positives = 94/128 (73%), Gaps = 6/128 (4%) Query: 1 VASRQAAEELLSQYPKLGGIFATESNGGIGVAEAVQAQQGSGSTLKIISFDTDKGTLDLV 60 +AS+QAA E+L YP + GIFATE+NGG+G+AEAV+ + + +K+ISFDT+K TLDLV Sbjct: 214 MASKQAAMEILKDYPDVQGIFATEANGGVGMAEAVK--ELNKKEIKLISFDTEKQTLDLV 271 Query: 61 KEGRIAATMAQGTWNMGYWSLTELFHLHRDLQEDPDVYEGSKPLPVPDKVDTGIDVVTRA 120 K G IAAT+AQGTWNMGYWSL LFHLH L G PLP VDTGI VVTR Sbjct: 272 KGGVIAATLAQGTWNMGYWSLQFLFHLHHHLTSPSR--SGDSPLPT--YVDTGITVVTRE 327 Query: 121 NVDNYYAK 128 NVD++YAK Sbjct: 328 NVDHFYAK 335 >B3EYL5.1 B3EYL5_BACST Arabinose binding protein Length = 335 Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 77/128 (60%), Positives = 94/128 (73%), Gaps = 6/128 (4%) Query: 1 VASRQAAEELLSQYPKLGGIFATESNGGIGVAEAVQAQQGSGSTLKIISFDTDKGTLDLV 60 +AS+QAA E+L+ YP + GIFATE+NGG+G+AEAV + + +K+ISFDT+K TLDLV Sbjct: 214 LASKQAAMEVLNDYPDVQGIFATEANGGVGMAEAVA--ELNKKYVKLISFDTEKQTLDLV 271 Query: 61 KEGRIAATMAQGTWNMGYWSLTELFHLHRDLQEDPDVYEGSKPLPVPDKVDTGIDVVTRA 120 KEG IAAT+AQGTWNMGYWSL LFHLH L S +P VDTGI VVTR Sbjct: 272 KEGAIAATLAQGTWNMGYWSLQFLFHLHHHLTSPSR----SGDALLPAYVDTGITVVTRD 327 Query: 121 NVDNYYAK 128 NVD++YAK Sbjct: 328 NVDHFYAK 335 >A4IPB0.1 A4IPB0_GEOTN ABC transporter sugar-binding protein Length = 333 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 75/127 (59%), Positives = 91/127 (71%), Gaps = 6/127 (4%) Query: 2 ASRQAAEELLSQYPKLGGIFATESNGGIGVAEAVQAQQGSGSTLKIISFDTDKGTLDLVK 61 AS+QAA E+L YP + GIFATE+NGG+G+AEAV + +K+ISFDT+K TLDLVK Sbjct: 213 ASKQAAIEILKDYPDVQGIFATEANGGVGMAEAVVML--NKKHVKLISFDTEKQTLDLVK 270 Query: 62 EGRIAATMAQGTWNMGYWSLTELFHLHRDLQEDPDVYEGSKPLPVPDKVDTGIDVVTRAN 121 +G IAAT+AQGTWNMGYWSL LF LH L S LP+P VDTGI VVT+ N Sbjct: 271 KGVIAATLAQGTWNMGYWSLQFLFQLHHRLTSSSR----SGDLPLPVYVDTGITVVTKEN 326 Query: 122 VDNYYAK 128 VD +YA+ Sbjct: 327 VDRFYAR 333 >B4BMA4.1 B4BMA4_9BACI ABC transporter sugar-binding protein Length = 333 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 75/127 (59%), Positives = 91/127 (71%), Gaps = 6/127 (4%) Query: 2 ASRQAAEELLSQYPKLGGIFATESNGGIGVAEAVQAQQGSGSTLKIISFDTDKGTLDLVK 61 AS+QAA E+L YP + GIFATE+NGG+G+AEAV + +K+ISFDT+K TLDLVK Sbjct: 213 ASKQAAIEILEDYPDVQGIFATEANGGVGMAEAVVML--NKKHVKLISFDTEKQTLDLVK 270 Query: 62 EGRIAATMAQGTWNMGYWSLTELFHLHRDLQEDPDVYEGSKPLPVPDKVDTGIDVVTRAN 121 +G IAAT+AQGTWNMGYWSL LF LH L S LP+P VDTGI VVT+ N Sbjct: 271 KGVIAATLAQGTWNMGYWSLQFLFQLHHRLTSSSR----SGDLPLPVYVDTGITVVTKEN 326 Query: 122 VDNYYAK 128 VD +YA+ Sbjct: 327 VDRFYAR 333 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.132 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 761,910,044 Number of extensions: 30541690 Number of successful extensions: 75257 Number of sequences better than 1.0e-05: 67 Number of HSP's gapped: 75405 Number of HSP's successfully gapped: 68 Length of query: 128 Length of database: 3,060,696,203 Length adjustment: 93 Effective length of query: 35 Effective length of database: 2,184,541,808 Effective search space: 76458963280 Effective search space used: 76458963280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 126 (53.1 bits)