BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0490.0001.p (421 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DAE3.1 B1DAE3_9BACL Two component transcriptional regulator, A... 375 e-102 B3K9S7.1 B3K9S7_9BACI Response regulator receiver 374 e-102 B4BMA7.1 B4BMA7_9BACI Two component transcriptional regulator, A... 372 e-101 A4IPA8.1 A4IPA8_GEOTN Putative uncharacterized protein 371 e-101 Q5KYP0.1 Q5KYP0_GEOKA Two-component response regulator 367 e-100 >B1DAE3.1 B1DAE3_9BACL Two component transcriptional regulator, AraC family Length = 397 Score = 375 bits (963), Expect = e-102, Method: Compositional matrix adjust. Identities = 188/394 (47%), Positives = 260/394 (65%), Gaps = 3/394 (0%) Query: 12 SWKVIIADDEAIIRDGIRQCVDWKSLGLQVXXXXXXXXXXXXXXVRHEVHIALVDLNMPI 71 +WKV+IADDE+IIR+GIR + W+ L L+V V + +I LVDL+MPI Sbjct: 4 TWKVLIADDESIIREGIRSSIPWEDLQLEVVGEAEDGEEALELAVEKQANILLVDLSMPI 63 Query: 72 MHGIELMKRLREQLPDCKIIVITGHDEFSYAQESIRLQVNDYILKPAEPKQLMQVLRGVR 131 M+G+ L+ LR+QLP CKI++ITGHDEF+YA E+I+L+V+DYILKP P L +VL V Sbjct: 64 MNGLTLISHLRQQLPKCKIVIITGHDEFNYAYEAIKLEVDDYILKPVNPDMLGEVLARVV 123 Query: 132 DQLIAEKQKHQQLQQASRQIVKNFPLLRERFCQEWLDGNLSQSEIMEQLHFLRLPAECPA 191 +L + LQ AS+QI KNF LLRERFC EW+ G L ++EI EQL FLR+P E P Sbjct: 124 QKLEETTVNEELLQMASKQIDKNFALLRERFCLEWIKGELGEAEIREQLSFLRMPGEEPD 183 Query: 192 LIGMIRWRGEAQNSG-LQEKERQLFLFAIENMVTELLQEYPKVIFRDAAGLIIILLWDAA 250 +G+IRW +++ EK+RQL LFAIEN++ E L+ + V FRD GLI++L+W Sbjct: 184 YVGVIRWPEQSKGKAFFSEKDRQLLLFAIENIMEEHLEPFTSVHFRDKVGLIVVLIWGKP 243 Query: 251 GEPVLAGVEAVVRSHLKIAVEVGTQXXXXXXXXXXXXYRKCRVNLSREQPLSPLVRRARQ 310 E V +EA V +LKI E+ Y + R +++RE LSP VRR ++ Sbjct: 244 QESVFRQIEADVAGYLKI--EIVASYQHSSSGDVPSLYAEARASVNRETKLSPFVRRTKE 301 Query: 311 YVLEHYGEYGLTLESIAGHLQASPVYLSRLFKQELGEPFGTYLTQTRLRKAAQLLHSTEL 370 + + + + L+LE IAG L S VYLSR+FKQE+G F + LT R+++A +LL+ T+ Sbjct: 302 IISDRFEDRDLSLEGIAGELNVSAVYLSRIFKQEMGTSFISMLTAARMKEAIRLLNETDQ 361 Query: 371 SMSEVAERTGYETQHYFSTAFKKQTGVSPLQFRK 404 ++ E+AE+TGYE+QHYFSTAFKK TG+ P Q+RK Sbjct: 362 AIHEIAEKTGYESQHYFSTAFKKTTGLPPNQYRK 395 >B3K9S7.1 B3K9S7_9BACI Response regulator receiver Length = 405 Score = 374 bits (961), Expect = e-102, Method: Compositional matrix adjust. Identities = 195/396 (49%), Positives = 258/396 (65%), Gaps = 2/396 (0%) Query: 12 SWKVIIADDEAIIRDGIRQCVDWKSLGLQVXXXXXXXXXXXXXXVRHEVHIALVDLNMPI 71 +++V+IADDE IIR+GIR VDW +LG++V + + I LVD+NMP Sbjct: 4 AYQVLIADDEPIIREGIRDAVDWGALGMEVAAEAEDGEEALELALSQPIDIMLVDMNMPF 63 Query: 72 MHGIELMKRLREQLPDCKIIVITGHDEFSYAQESIRLQVNDYILKPAEPKQLMQVLRGVR 131 + GI LMKR++E+ P C+ ++ITGHDEF+YAQE+IRL V DYILKP + L+QVL VR Sbjct: 64 LDGIGLMKRMKEERPACRFVIITGHDEFAYAQEAIRLGVKDYILKPVNAEHLIQVLSSVR 123 Query: 132 DQLIAEKQKHQQLQQASRQIVKNFPLLRERFCQEWLDGNLSQSEIMEQLHFLRLPAECPA 191 D+L + + L++AS QI KN PLLRERFC EW+ G L + E +EQL FL LP P Sbjct: 124 DELNDHQIQESYLKKASEQIEKNIPLLRERFCLEWMHGLLDEEEAIEQLEFLGLPPCRPT 183 Query: 192 LIGMIRW-RGEAQNSGLQEKERQLFLFAIENMVTELLQEYPKVIFRDAAGLIIILLWDAA 250 IG+ RW A ++E +RQL+LFA+EN++ EL P V+FRD G I I W Sbjct: 184 RIGIARWPEMTAPQPLMKESDRQLYLFAMENIIAELFHPAPCVLFRDHTGWIGICCWGEV 243 Query: 251 GEPVLAGVEAVVRSHLKIAVEVGTQXXXX-XXXXXXXXYRKCRVNLSREQPLSPLVRRAR 309 + A E +++ +LK+AV V + Y CR + +E LSPLVRRAR Sbjct: 244 DMEIAADAEQLIQKYLKLAVNVHLEPVSEGADGAVAAAYEACREGVFKEAQLSPLVRRAR 303 Query: 310 QYVLEHYGEYGLTLESIAGHLQASPVYLSRLFKQELGEPFGTYLTQTRLRKAAQLLHSTE 369 Q + E Y LTLES A LQ SPVYLSR+ K+ELG F T +TQTR++KA QLL++TE Sbjct: 304 QLIQEQYAVRELTLESFAQALQVSPVYLSRMLKKELGTSFITLMTQTRIQKAIQLLNATE 363 Query: 370 LSMSEVAERTGYETQHYFSTAFKKQTGVSPLQFRKG 405 LS+ ++AER GY++QHYFSTAFKK GVSP ++RKG Sbjct: 364 LSILDIAERVGYDSQHYFSTAFKKVMGVSPNRYRKG 399 >B4BMA7.1 B4BMA7_9BACI Two component transcriptional regulator, AraC family Length = 400 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 179/392 (45%), Positives = 258/392 (65%) Query: 13 WKVIIADDEAIIRDGIRQCVDWKSLGLQVXXXXXXXXXXXXXXVRHEVHIALVDLNMPIM 72 WKV+IADDE IIR+GIR+ +DW ++V ++HEVH+ VDL+MPIM Sbjct: 2 WKVLIADDEMIIREGIRESIDWAQFNMEVIAEAEDGEEALELAIKHEVHVLFVDLSMPIM 61 Query: 73 HGIELMKRLREQLPDCKIIVITGHDEFSYAQESIRLQVNDYILKPAEPKQLMQVLRGVRD 132 G+ LMK +RE+LP C +IVITG+DEFSYAQE++RLQV+DY+LKP +PKQL +V+ V++ Sbjct: 62 DGLTLMKHVRERLPHCHMIVITGYDEFSYAQEALRLQVDDYLLKPTDPKQLREVVAKVKE 121 Query: 133 QLIAEKQKHQQLQQASRQIVKNFPLLRERFCQEWLDGNLSQSEIMEQLHFLRLPAECPAL 192 +L E Q+ ++ + Q+ KN LLR++ EW++G L++ E+M QL L LP+ CP Sbjct: 122 KLEREHQERGYVELLTSQVQKNVRLLRQQLGVEWVEGRLTEEEMMRQLPLLGLPSFCPVQ 181 Query: 193 IGMIRWRGEAQNSGLQEKERQLFLFAIENMVTELLQEYPKVIFRDAAGLIIILLWDAAGE 252 + +I+W + +++R + LFAIEN+V+ELL + ++FRD+ G +++++W E Sbjct: 182 VVVIQWFSFKNQPIMNDRDRHILLFAIENIVSELLVNHEMLVFRDSNGFVVVIVWTPISE 241 Query: 253 PVLAGVEAVVRSHLKIAVEVGTQXXXXXXXXXXXXYRKCRVNLSREQPLSPLVRRARQYV 312 G+EA ++ +L I + Y KC+ + E+ LSP+VRRA+QY+ Sbjct: 242 EQRRGIEAALKQYLYIGASAYMEMVEGGVTGVISAYEKCKRKMEEEKRLSPVVRRAKQYI 301 Query: 313 LEHYGEYGLTLESIAGHLQASPVYLSRLFKQELGEPFGTYLTQTRLRKAAQLLHSTELSM 372 H+ + LTLES+A L SP+YLSR+ KQELG F LT+ RL KA +LL STEL + Sbjct: 302 QTHFSQSELTLESVAQFLNVSPIYLSRMIKQELGISFVHLLTKIRLTKAVELLLSTELPI 361 Query: 373 SEVAERTGYETQHYFSTAFKKQTGVSPLQFRK 404 E+AER GY+TQHYFSTAFKK GV P Q+RK Sbjct: 362 HEIAERVGYDTQHYFSTAFKKAMGVPPNQYRK 393 >A4IPA8.1 A4IPA8_GEOTN Putative uncharacterized protein Length = 400 Score = 371 bits (952), Expect = e-101, Method: Compositional matrix adjust. Identities = 179/392 (45%), Positives = 257/392 (65%) Query: 13 WKVIIADDEAIIRDGIRQCVDWKSLGLQVXXXXXXXXXXXXXXVRHEVHIALVDLNMPIM 72 WKV+IADDE IIR+GIR+ +DW ++V ++HEVH+ VDL+MPIM Sbjct: 2 WKVLIADDEMIIREGIRESIDWAQFNMEVIAEAEDGEEALELAIKHEVHVLFVDLSMPIM 61 Query: 73 HGIELMKRLREQLPDCKIIVITGHDEFSYAQESIRLQVNDYILKPAEPKQLMQVLRGVRD 132 G+ LMK +RE+LP C +IVITG+DEFSYAQE++RLQV+DY+LKP +PKQL +V+ V++ Sbjct: 62 DGLTLMKHVRERLPHCHMIVITGYDEFSYAQEALRLQVDDYLLKPTDPKQLREVVAKVKE 121 Query: 133 QLIAEKQKHQQLQQASRQIVKNFPLLRERFCQEWLDGNLSQSEIMEQLHFLRLPAECPAL 192 +L E Q+ ++ + Q+ KN LLR++ EW++G L + E+M QL L LP+ CP Sbjct: 122 KLEREHQERGYVELLTSQVQKNVGLLRQQLGVEWVEGRLREEEMMRQLPLLGLPSFCPVQ 181 Query: 193 IGMIRWRGEAQNSGLQEKERQLFLFAIENMVTELLQEYPKVIFRDAAGLIIILLWDAAGE 252 + +I+W + +++R + LFAIEN+V+ELL + ++FRD+ G +++++W E Sbjct: 182 VVVIQWFSFKNQPIMNDRDRYILLFAIENIVSELLVNHEMLVFRDSNGFVVVIVWTPISE 241 Query: 253 PVLAGVEAVVRSHLKIAVEVGTQXXXXXXXXXXXXYRKCRVNLSREQPLSPLVRRARQYV 312 G+EA ++ +L I + Y KC+ + E+ LSP+VRRA+QY+ Sbjct: 242 EQRRGIEAALKQYLYIGASAYMEMVEGGVTGVISAYEKCKRKMEEEKRLSPVVRRAKQYI 301 Query: 313 LEHYGEYGLTLESIAGHLQASPVYLSRLFKQELGEPFGTYLTQTRLRKAAQLLHSTELSM 372 H+ + LTLES+A L SP+YLSR+ KQELG F LT+ RL KA +LL STEL + Sbjct: 302 QTHFSQSELTLESVAQFLNVSPIYLSRMIKQELGISFVHLLTKIRLTKAVELLLSTELPI 361 Query: 373 SEVAERTGYETQHYFSTAFKKQTGVSPLQFRK 404 E+AER GY+TQHYFSTAFKK GV P Q+RK Sbjct: 362 HEIAERVGYDTQHYFSTAFKKAMGVPPNQYRK 393 >Q5KYP0.1 Q5KYP0_GEOKA Two-component response regulator Length = 401 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 181/392 (46%), Positives = 257/392 (65%) Query: 13 WKVIIADDEAIIRDGIRQCVDWKSLGLQVXXXXXXXXXXXXXXVRHEVHIALVDLNMPIM 72 WKV+IADDEAIIR+GIR+ +DW ++V +RH V++ VDL+MPIM Sbjct: 2 WKVLIADDEAIIREGIRESIDWNEFNMEVVAEAEDGEEALELALRHRVNVLFVDLSMPIM 61 Query: 73 HGIELMKRLREQLPDCKIIVITGHDEFSYAQESIRLQVNDYILKPAEPKQLMQVLRGVRD 132 G+ LMK RE+LP+C +IVITG+DEFSYAQE+IRLQV+DY+LKP +P++L +V+ V++ Sbjct: 62 DGLTLMKYAREKLPNCHMIVITGYDEFSYAQEAIRLQVDDYLLKPTDPQRLREVVAKVKE 121 Query: 133 QLIAEKQKHQQLQQASRQIVKNFPLLRERFCQEWLDGNLSQSEIMEQLHFLRLPAECPAL 192 +L E+++ Q + + Q+ K+ +LR++F EW+ G L++ +IM QL L L CPA Sbjct: 122 KLEQEQKEKQYRELLTNQVQKHIHVLRQQFGMEWVAGRLTEEDIMGQLSLLGLSRSCPAQ 181 Query: 193 IGMIRWRGEAQNSGLQEKERQLFLFAIENMVTELLQEYPKVIFRDAAGLIIILLWDAAGE 252 + +I+W + +++RQL LFAIE V+ELL + K++FRD+ I+++ W E Sbjct: 182 VVVIQWFSFKNQPIVSDRDRQLLLFAIEKAVSELLGDGEKIVFRDSNEFIVVISWKPISE 241 Query: 253 PVLAGVEAVVRSHLKIAVEVGTQXXXXXXXXXXXXYRKCRVNLSREQPLSPLVRRARQYV 312 +E ++ HL I V + Y KC+ + E LSP+VRRARQY+ Sbjct: 242 EQCRQMETALKQHLHIRASVYIETVEGGMTGVMAAYEKCKEQMVEESRLSPIVRRARQYI 301 Query: 313 LEHYGEYGLTLESIAGHLQASPVYLSRLFKQELGEPFGTYLTQTRLRKAAQLLHSTELSM 372 +H+ + LTLES+A L SPVYLSR+ KQELG F L +TR+ KAA+LL STEL + Sbjct: 302 QKHFSQSDLTLESVAQFLNVSPVYLSRIIKQELGISFIHLLAKTRMEKAAELLLSTELPI 361 Query: 373 SEVAERTGYETQHYFSTAFKKQTGVSPLQFRK 404 E+AER GY+TQHYFSTAFKK GVSP Q+R+ Sbjct: 362 HEIAERVGYDTQHYFSTAFKKAMGVSPNQYRR 393 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,222,376,619 Number of extensions: 80962171 Number of successful extensions: 294160 Number of sequences better than 1.0e-05: 4960 Number of HSP's gapped: 299758 Number of HSP's successfully gapped: 5627 Length of query: 421 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 283 Effective length of database: 1,760,596,133 Effective search space: 498248705639 Effective search space used: 498248705639 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)