BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0489.0020.p (606 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1KWH8.1 B1KWH8_CLOBM UvrABC system protein A (UvrA protein) (Ex... 368 1e-99 Q92AV6.1 Q92AV6_LISIN Lin1813 protein 340 3e-91 Q17ZT9.1 Q17ZT9_CLOD6 Putative excinuclease ABC subunit A 335 1e-89 B8I5E2.1 B8I5E2_CLOCE ABC transporter related 330 2e-88 Q1QCF6.1 Q1QCF6_PSYCK Excinuclease ABC, A subunit 243 4e-62 >B1KWH8.1 B1KWH8_CLOBM UvrABC system protein A (UvrA protein) (Excinuclease ABC subunit A) Length = 790 Score = 368 bits (944), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 225/580 (38%), Positives = 330/580 (56%), Gaps = 33/580 (5%) Query: 1 MKHIEVYNAKLHNLKNITTKIPKQQLIVVTXXXXXXXXXXXXDTLHHEGQRLYLEALGIS 60 MK I++ NA +HNLKNI IPK +LIVVT D + EG++ YL++LG+S Sbjct: 1 MKKIKIKNAHMHNLKNIDITIPKDKLIVVTGVSGSGKSSLIFDLIFEEGRKQYLQSLGMS 60 Query: 61 HDVLHYDS--FDMIQGLSPTIAVQQRTVSNLNPRSVVGTATRLLNLMALIYVNEGVEKGS 118 L +D FD I GLSPTIAV+Q V N RS VG+ T +LN++AL++ N+G + + Sbjct: 61 ---LEFDDNKFDSITGLSPTIAVKQSLVRQTNSRSTVGSKTGILNMLALLFSNDG-KMVN 116 Query: 119 EQTEASLRGDV---PGMFMFNSPHGSCPACSGRGTITEVNIAKILPPDSESIEAWHQFAY 175 E+T ++ D F + SP+G C C GRG VNI K++P + Sbjct: 117 EETNFNIGDDEKLDSSYFSYTSPNGMCMKCGGRGKYFNVNIDKVIPNN------------ 164 Query: 176 EFPQHKKEEKEYVTKRFANFIQF-YNLAPETPVSELSGEARDVFMHYRPKRTQSKGNLIF 234 E + + T + N +Q Y+ TP ++L + +D ++ P T + NL + Sbjct: 165 EITMQQVFKNIGATSGYMNLLQRKYHEYFYTPFNQLPYDIKDELIYGIP--TNNSNNLSY 222 Query: 235 YGVNVVIEEKLKKVNLQQFPDLHITRPCTRCHGYRLGEKALSVTLENKHIGQLCRMDVLG 294 V+ L+ NL+ ++ C CHG+R+GE+A SV L ++HIG++ M + Sbjct: 223 CVERVLHNRYLQGENLKGIYEM---ETCESCHGFRVGEEARSVFLNHRHIGEVGNMTLSQ 279 Query: 295 LTAFFQDYLDVRPHTAFVMHLIKEILGKLACMETVGLSYLNLYREIPSLSGGEIQRLHIM 354 + + Q+ L T F + + IL K+ + V L +L LYRE+PSLSGGE+QR+ + Sbjct: 280 VNDYLQELLPQNTLTKFGVKMTNTILKKINALIRVRLGHLTLYREMPSLSGGELQRIFLN 339 Query: 355 SHLSAKVDSIIYIFDEPTAGLHEVEKAKIIESFQSLKEQGNTVIVVEHDESVIRQAEYII 414 SHL + +DS+IYIFDEPT+GLHE EK +I++S LK+ GNTVI+VEHD+S I+ AE+II Sbjct: 340 SHLDSGMDSLIYIFDEPTSGLHEFEKQEILQSILKLKKSGNTVIIVEHDKSTIKLAEHII 399 Query: 415 DFGPKAGEQGGTIVYQGDYARFLDSAESITAKYLLHK-PMPPKEYTVAADASTPRLSIRN 473 D GPKAG GG IVYQG + L++ SIT KYL + P P ++ + +T ++I N Sbjct: 400 DVGPKAGIYGGDIVYQGSFEGLLNAKHSITGKYLSGRTPFPVRQRKNLSKTNTNHITIHN 459 Query: 474 AQTNNLKNINVDIPLQSIVGICGLSGSGKSSLMIDTLIPKLQAALKARAPGNKRXXXXXX 533 A+TNNLK++ V IPL +VGI G+SGSGKSSL+ TL+P L+ + + Sbjct: 460 AKTNNLKDLTVSIPLNQLVGIAGVSGSGKSSLISKTLLPLLKNSFYRNTQRIQFDEDYDE 519 Query: 534 XXXXXXXXVQASAEAELEGAGNIDGFVVVTQQLARRHENS 573 V +++G NI G+V ++Q R NS Sbjct: 520 NISLFRPIVN-----QIDGMENIQGYVEISQAPIGRKMNS 554 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 62/196 (31%), Positives = 104/196 (53%), Gaps = 17/196 (8%) Query: 255 DLHITRPCTRCHGYRLGEKALSVTLENKHIGQLCRMDVLGLTAFFQDY-LDVRPHTAFVM 313 D+H + C C+G R LS+ + K I + M ++ FF+D L +P Sbjct: 610 DIHFDKSCHECNGKRFNHDTLSIKFKGKDIYDVLEMSIIEAITFFEDTKLSFKP------ 663 Query: 314 HLIKEILGKLACMETVGLSYLNLYREIPSLSGGEIQRLHIMSHLSA-KVDSIIYIFDEPT 372 L +E +G+ Y+ L + IP+LSGGE QR+ + + K +I+YI DEP+ Sbjct: 664 ---------LKVLEQIGMGYIKLGQPIPTLSGGEAQRIKLAKEIGKQKKGNILYILDEPS 714 Query: 373 AGLHEVEKAKIIESFQSLKEQGNTVIVVEHDESVIRQAEYIIDFGPKAGEQGGTIVYQGD 432 GL + + AK+I L GN+VIV+EHD ++ ++II+ G G +GG ++ +G Sbjct: 715 TGLSQYDTAKLITLLDELIIDGNSVIVIEHDLDILSSCDWIIELGKGGGIEGGNLLAEGT 774 Query: 433 YARFLDSAESITAKYL 448 + ++ +S+T +YL Sbjct: 775 PQQLKENKDSLTGRYL 790 >Q92AV6.1 Q92AV6_LISIN Lin1813 protein Length = 620 Score = 340 bits (871), Expect = 3e-91, Method: Compositional matrix adjust. Identities = 189/526 (35%), Positives = 303/526 (57%), Gaps = 33/526 (6%) Query: 1 MKHIEVYNAKLHNLKNITTKIPKQQLIVVTXXXXXXXXXXXXDTLHHEGQRLYLEALGIS 60 M +I++ NA ++NLKNI+ +IPK + IV+T D + EG++ YL+++G++ Sbjct: 1 MDYIQIENAYINNLKNISIEIPKNKFIVITGISGSGKSSLAFDLIFEEGRKKYLQSIGMA 60 Query: 61 HDVLHYDSFDMIQGLSPTIAVQQRTVSNLNPRSVVGTATRLLNLMALIYVNEGVEKGSEQ 120 D D + I GLSPT+AV+Q + NPRS VG+ T LLN L++ NEG + SE Sbjct: 61 LD-FGTDYYTNITGLSPTVAVKQNLIRQSNPRSTVGSKTGLLNKFCLLFANEGSYQDSES 119 Query: 121 TEASLRGDVPGMFMFNSPHGSCPACSGRGTITEVNIAKILPPDSESIEAWHQFAYEFPQH 180 + P +F + SP+G C C+G G +++ I+ + ++E Q Sbjct: 120 FSLANDDINPDIFSYLSPNGMCFDCAGTGKQFHIHMENIISSKTVTVEQVFQ-------- 171 Query: 181 KKEEKEYVTKRFANFIQ------FYNLAPETPVSELSGEARDVFMHYRPKRTQSKGNLIF 234 + TK + N +Q F+ P+ + V +Y K + Sbjct: 172 ----QIGSTKGYLNLLQRKYTAYFHEAFSNCPIEIQNELIYGVVDNYSGKTS-------- 219 Query: 235 YGVNVVIEEK-LKKVNLQQFPDLHITRPCTRCHGYRLGEKALSVTLENKHIGQLCRMDVL 293 Y + V+ + L+ ++Q+F I C C+GYR+ ++A + + N H+G++ M ++ Sbjct: 220 YCIERVLHNRYLRNEDVQRFYSQEI---CESCNGYRICDEARMMKIANLHLGEIASMSLI 276 Query: 294 GLTAFFQDYLDVRPHTAFVMHLIKEILGKLACMETVGLSYLNLYREIPSLSGGEIQRLHI 353 + F +Y+++ +AF L + ++ L + + L +L +YREIP+LSGGE+QR+ + Sbjct: 277 KVKEFLDNYIEMNKLSAFGTELSRSLITTLNSLIHIKLGHLTMYREIPTLSGGELQRIFL 336 Query: 354 MSHLSAKVDSIIYIFDEPTAGLHEVEKAKIIESFQSLKEQGNTVIVVEHDESVIRQAEYI 413 HL +K+DS+IY+FDEPT+GLHE EK +IIES QS+K GNTV++V HD+ +I+ A++I Sbjct: 337 YDHLESKLDSLIYVFDEPTSGLHESEKQEIIESLQSIKAHGNTVLIVSHDKKIIKAADHI 396 Query: 414 IDFGPKAGEQGGTIVYQGDYARFLDSAESITAKYLLHKPMPPKEYTVAADASTPRLSIRN 473 ID G AG+ GG IVYQG Y+ FL++ S+T+K+L + K + + LSI N Sbjct: 397 IDVGTNAGDLGGEIVYQGSYSEFLNNRHSLTSKFLDYD--MTKSFKKNKQKTKDTLSISN 454 Query: 474 AQTNNLKNINVDIPLQSIVGICGLSGSGKSSLMIDTLIPKLQAALK 519 A NNLKNI+++IP+ +VGI G+SGSGKS+L+ TL+P + LK Sbjct: 455 ANRNNLKNISIEIPINRLVGIAGVSGSGKSTLISKTLVPLCKEQLK 500 >Q17ZT9.1 Q17ZT9_CLOD6 Putative excinuclease ABC subunit A Length = 806 Score = 335 bits (858), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 220/593 (37%), Positives = 326/593 (54%), Gaps = 43/593 (7%) Query: 1 MKHIEVYNAKLHNLKNITTKIPKQQLIVVTXXXXXXXXXXXXDTLHHEGQRLYLEALGIS 60 MK I++ AK+HNLKNI IPK +L+V T D + EG++ YL++LGI Sbjct: 1 MKEIKINGAKIHNLKNIDVSIPKDKLVVATGVSGSGKSSLMFDIVFEEGRKQYLQSLGIL 60 Query: 61 HDVLHYDSFDMIQGLSPTIAVQQRTVSNLNPRSVVGTATRLLNLMALIYVNEG------- 113 + D FD IQGL+PTIAVQQ + NPRS VGT T +LN++ L+Y EG Sbjct: 61 AGIDSEDKFDNIQGLAPTIAVQQNIIRQSNPRSTVGTRTNILNMLTLLYSVEGQIMCTMC 120 Query: 114 --------VEKGSEQTEASLRGDVPGMFMFNSPHGSCPACSGRGTITEVNIAKILPPDSE 165 + E LR P F +NS G C CSG G E+NI K++ + Sbjct: 121 DTPVSDNLICNNCGYEEERLR---PSYFSYNSSDGMCMKCSGHGAYFEINIEKLVLDKHD 177 Query: 166 SIEAWHQFAYEFPQHKKEEKEYVTKRFANF--IQFYNLAPETPVSELSGEARDVFMHYRP 223 +++ A P + + +K+F ++ IQF L PE +E+ ++ HY Sbjct: 178 TLKQVLDRAKITPGYLR----VFSKKFNDYLDIQFLQL-PEEIRNEV------LYGHYEN 226 Query: 224 KRTQSKGNLIFYGVNVVIEEKLKKVNLQQFPDLHITRPCTRCHGYRLGEKALSVTLENKH 283 + S + +F+ + K+ + ++ C+ C+G+++GE+A V L KH Sbjct: 227 GKKSSSLSKVFH-------NRYKRG--EDLNGVYTMTACSDCNGFKIGEEARRVLLNGKH 277 Query: 284 IGQLCRMDVLGLTAFFQDYLDVRPHTAFVMHLIKEILGKLACMETVGLSYLNLYREIPSL 343 IG+L +M +L + F + ++ F +L+ +IL K + L +L+LYRE+ +L Sbjct: 278 IGELGKMTILEIDDFLKLLINQGNLNTFGTNLVNDILSKTQHLIESRLGHLSLYREMSTL 337 Query: 344 SGGEIQRLHIMSHLSAKVDSIIYIFDEPTAGLHEVEKAKIIESFQSLKEQGNTVIVVEHD 403 SGGE+QRL + SHL +++DS+IY+ DEPTAGLHE EK I++S + LK+ GNTVIVVEHD Sbjct: 338 SGGEMQRLFLNSHLDSEMDSLIYVLDEPTAGLHESEKIDILKSLKKLKDLGNTVIVVEHD 397 Query: 404 ESVIRQAEYIIDFGPKAGEQGGTIVYQGDYARFLDSAESITAKYLLHK-PMPPK--EYTV 460 ++ I AE+IID GPKAG +GG +VYQGD L S +S+T +YL K PMP + + Sbjct: 398 KNTIEMAEHIIDIGPKAGVEGGQLVYQGDLEGLLQSDKSLTGQYLSGKYPMPNRTSNKNI 457 Query: 461 AADASTPRLSIRNAQTNNLKNINVDIPLQSIVGICGLSGSGKSSLMIDTLIPKLQAALKA 520 P ++I+NA TNNLKN+ V +PL ++VGI G SGSGKSSL+ DTL+P L++ Sbjct: 458 THTDKIPCITIQNANTNNLKNVTVSLPLGAMVGISGKSGSGKSSLISDTLLPLLRSQFNN 517 Query: 521 RAPGNKRXXXXXXXXXXXXXXVQASAEAELEGAGNIDGFVVVTQQLARRHENS 573 N+ V + L G +I G+ ++Q ++ NS Sbjct: 518 HTINNQINSSESEIGEEDDYAVVETIADRLIGTKHISGYSEISQSPIGKNMNS 570 Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 67/195 (34%), Positives = 110/195 (56%), Gaps = 15/195 (7%) Query: 255 DLHITRPCTRCHGYRLGEKALSVTLENKHIGQLCRMDVLGLTAFFQDYLDVRPHTAFVMH 314 +L I C+ C G R +++LS+ +NK+I + M V FF+D Sbjct: 626 NLSIDHICSECQGKRFNDESLSIKYKNKNIHDILNMSVSESVHFFKD------------- 672 Query: 315 LIKEILGKLACMETVGLSYLNLYREIPSLSGGEIQRLHIMSHLSAKVD-SIIYIFDEPTA 373 I I+ L +E +G+ Y+ L + P+LSGGE QR+ + + K + +I+Y+ DEPT Sbjct: 673 -IPNIVSHLNVLEQIGMGYIKLGQPTPTLSGGESQRIKLAKEIGKKRNGNILYVLDEPTT 731 Query: 374 GLHEVEKAKIIESFQSLKEQGNTVIVVEHDESVIRQAEYIIDFGPKAGEQGGTIVYQGDY 433 GL + +K+I+ L E GN+VIVVEHD V+ ++I++ GP+ G++GG I+ +G Sbjct: 732 GLSLYDTSKLIQLLDELVENGNSVIVVEHDIDVLNVCDWIVELGPEGGDKGGYIIAEGSP 791 Query: 434 ARFLDSAESITAKYL 448 ++ +SIT +YL Sbjct: 792 KTLKENPKSITGRYL 806 >B8I5E2.1 B8I5E2_CLOCE ABC transporter related Length = 783 Score = 330 bits (846), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 205/534 (38%), Positives = 293/534 (54%), Gaps = 37/534 (6%) Query: 4 IEVYNAKLHNLKNITTKIPKQQLIVVTXXXXXXXXXXXXDTLHHEGQRLYLEALGISHDV 63 IE+ NA++HNLK I KIPK +L V+T DTL+ EG+R YL G + Sbjct: 5 IEIKNARIHNLKGIDVKIPKNKLTVITGVSGSGKSSLAFDTLYEEGKRRYLMFSGTQFMI 64 Query: 64 LHYDSFDMIQGLSPTIAVQQRTVSNLNPRSVVGTATRLLNLMALIYVNEGVEKGSEQTEA 123 +FD I GLSPT+AV+QR + NPRS VGT T++ N++A+++ G Sbjct: 65 DSTPTFDSISGLSPTVAVEQRIIRQSNPRSTVGTRTKIGNILAMLFAAYGTRDSKYDDGL 124 Query: 124 SLRGDVPGMFMFNSPHGSCPACSGRGTITEVNIAKILPPDSESIEAWHQFAYEFPQHKKE 183 L + MF NSP G C C G GT+ +V+ K+ S +E + KK Sbjct: 125 PLSME---MFQKNSPKGMCVKCLGSGTVKKVDEDKLFGDLSLKVEDVCLGLGKRGSTKK- 180 Query: 184 EKEYVTKRFANFIQFYNLAPETPVSELSGE----------ARDVFMHYRPKRTQSKGNLI 233 +F +++N++P+ +S L+ E + FM + P I Sbjct: 181 -------MLDSFYKYHNISPDQKLSSLTDEQLFCLKYGDSGKSSFMGFIP--------WI 225 Query: 234 FYGVNVVIEEKLKKVNLQQFPDLHITRP-CTRCHGYRLGEKALSVTLENKHIGQLCRMDV 292 F+ N + +L ++T+P C +C G LG A S T+ K I +L + + Sbjct: 226 FHVTNGAFSTNSRLSHLLTEAG-YMTKPSCPKCGGTGLGVHASSTTIGGKTISELENIYI 284 Query: 293 LGLTAFFQDYLDVRPHTAFVMHLIKEILGKLACMETVGLSYLNLYREIPSLSGGEIQRLH 352 L D+L+ P L+ EIL KL+CM VGL +L+L R +P+LSGGEIQRL Sbjct: 285 KDLF----DFLNTTPLKR--SPLLNEILTKLSCMVDVGLHHLSLSRPVPTLSGGEIQRLF 338 Query: 353 IMSHLSAKVDSIIYIFDEPTAGLHEVEKAKIIESFQSLKEQGNTVIVVEHDESVIRQAEY 412 + S++ A++DSII++FDEPT GLHEVEK K+I ++L +GNTVI VEHDE+ +R A+Y Sbjct: 339 LASYIIAEMDSIIFVFDEPTIGLHEVEKEKLISIIRNLVNRGNTVIAVEHDENFMRCADY 398 Query: 413 IIDFGPKAGEQGGTIVYQGDYARFLDSAESITAKYLLHKPMPPKEYTVAADASTPRLSIR 472 IID GP AG GG ++QG + FL S TA YL + + + T S L + Sbjct: 399 IIDLGPFAGINGGERIFQGSFEEFLQCKHSNTAPYLKNNDILNMKSTYRTVNSDKILKVE 458 Query: 473 NAQTNNLKNINVDIPLQSIVGICGLSGSGKSSLMIDTLIPKLQAALKARAPGNK 526 NA +NLKN+ VDIPL +VG+ G+SGSGKSSL+ DTL+PKL+ L + G++ Sbjct: 459 NANIHNLKNVTVDIPLGLMVGVAGVSGSGKSSLISDTLVPKLKILLNNKFVGDQ 512 Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 94/193 (48%), Gaps = 15/193 (7%) Query: 258 ITRPCTRCHGYRLGEKALSVTLENKHIGQLCRMDVLGLTAFFQDYLDVRPHTAFVMHLIK 317 I C C G +AL VTL K+I ++ V FF+ K Sbjct: 603 IDTECEACSGTGFIPEALEVTLNGKNIKEVLSFTVDEAVLFFKGR-------------DK 649 Query: 318 EILGKLACMETVGLSYLNLYREIPSLSGGEIQRLHIMSHLSA--KVDSIIYIFDEPTAGL 375 +I LA ++ VG+ Y+ L ++ P++SGGE QR+ + LS +YI DEPT GL Sbjct: 650 QIDKILATLQRVGMGYITLGQKTPTISGGESQRIKLAKELSKGQAAKDAVYILDEPTTGL 709 Query: 376 HEVEKAKIIESFQSLKEQGNTVIVVEHDESVIRQAEYIIDFGPKAGEQGGTIVYQGDYAR 435 + ++++ + L +GNTVIV EHD ++ +YI + GP G GG ++ G Sbjct: 710 SFHDSVRLMKLMEELVTKGNTVIVTEHDPYILSNCDYIFEMGPGGGSDGGKLIAAGSPVD 769 Query: 436 FLDSAESITAKYL 448 ++ SI +YL Sbjct: 770 LKNNQNSIIGRYL 782 >Q1QCF6.1 Q1QCF6_PSYCK Excinuclease ABC, A subunit Length = 853 Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 171/552 (30%), Positives = 272/552 (49%), Gaps = 70/552 (12%) Query: 4 IEVYNAKLHNLKNITTKIPKQQLIVVTXXXXXXXXXXXXDTLHHEGQRLYLEALGISH-- 61 I+V A++HNLKN+ +P+ L+V T TL E Q YL+++ Sbjct: 30 IQVRGARVHNLKNVDVDLPRNALVVFTGISGSGKSSLAFGTLFAESQHRYLDSVSPYARR 89 Query: 62 --DVLHYDSFDMIQGLSPTIAVQQRTVSNLNPRSVVGTATRLLNLMALIYVNEGVEKGSE 119 D + D I+GL P +A+QQ+ + RS VG+ T + N + ++Y G + Sbjct: 90 LIDQVDQPDVDSIEGLPPAVALQQQR-GTPSVRSSVGSVTTISNGLRMLYSRAGEYPAGQ 148 Query: 120 QTEASLRGDVPGMFMFNSPHGSCPACSGRGTITEVNIAKILPPDSESIE---------AW 170 L D F N+P G+CP CSG G + EV ++P ++++I AW Sbjct: 149 DI---LYADA---FSPNTPDGACPTCSGIGRVFEVTEELLVPDNTKTIRERAIAAWPPAW 202 Query: 171 H---------QFAYEFPQHKKEEKEYVT--KRFANFIQFYNLAPETPV-SELSGE-ARDV 217 Y+ +K + T ++ ++I F + PE PV E + E RD Sbjct: 203 QGQNLSRILTSLGYDI------DKPWNTLPQKTRDWILFTDDTPEVPVYPEYNIEQVRDA 256 Query: 218 FM-----HYRPKRTQSKGNLIFYGVNVVIEEKLKKVNLQQFPDLHITRPCTRCHGYRLGE 272 +Y+ T +K N + + + KK + QF + I+ C CHG +L + Sbjct: 257 IKKGEKPNYKGTFTSAK-NFVLHSFASTQSPRTKK-RVSQF--MQISE-CPECHGKKLKK 311 Query: 273 KALSVTLENKHIGQLCRMDVLGLTAFFQDYLDVRPHT-------AFVMHLI-KEILGKLA 324 ++LSV IG+L ++ + + QD +P+ A V I +IL ++ Sbjct: 312 ESLSVKFAGLDIGELSQLTLTEMALKLQDAAKTKPNDNMPNREKAIVAQRIASDILSRVE 371 Query: 325 CMETVGLSYLNLYREIPSLSGGEIQRLHIMSHLSAKVDSIIYIFDEPTAGLHEVEKAKII 384 + T+GL YL+L R P+LS GE+QRL + + + +K+ ++Y+ DEP+AGLH + ++ Sbjct: 372 ALTTLGLGYLSLERTTPTLSPGELQRLRLATQIRSKLFGVVYVLDEPSAGLHPADTQALL 431 Query: 385 ESFQSLKEQGNTVIVVEHDESVIRQAEYIIDFGPKAGEQGGTIVYQGDYARFLDSAESIT 444 + L GN++ +VEHD SVIR A++I+D GPKAG GG ++Y G A D A+S T Sbjct: 432 GALDELTAAGNSLFIVEHDVSVIRHADWIVDVGPKAGTHGGEVIYSGPVAGLRDVAQSRT 491 Query: 445 AKYLLHKPMPPKEYTVAADASTPR-----LSIRNAQTNNLKNINVDIPLQSIVGICGLSG 499 +YL T A TPR L + N + NNL+ ++V PL + + G+SG Sbjct: 492 GQYLFE--------TEGAVEHTPRKAKASLQLVNIERNNLQGLDVAFPLGVMTTVTGVSG 543 Query: 500 SGKSSLMIDTLI 511 SGKSSL+ L+ Sbjct: 544 SGKSSLVSQALV 555 Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 69/190 (36%), Positives = 97/190 (51%), Gaps = 15/190 (7%) Query: 261 PCTRCHGYRLGEKALSVTLENKHIGQLCRMDVLGLTAFFQDYLDVRPHTAFVMHLIKEIL 320 PC CHG R ++ L +T K+I ++ + V FF + IL Sbjct: 677 PCQVCHGQRYNDETLEITYRGKNIAEILDLTVESAYEFFVEE--------------SSIL 722 Query: 321 GKLACMETVGLSYLNLYREIPSLSGGEIQRLHIMSHLS-AKVDSIIYIFDEPTAGLHEVE 379 L + VGL YL L + LSGGE QR+ + + L + +YI DEPT GLH + Sbjct: 723 RALDALLKVGLGYLRLGQPATELSGGEAQRIKLATELQRTQRGDTLYILDEPTTGLHPSD 782 Query: 380 KAKIIESFQSLKEQGNTVIVVEHDESVIRQAEYIIDFGPKAGEQGGTIVYQGDYARFLDS 439 + ++ L + GNTVI+VEHD V +++IID GP AG++GG IV +G A S Sbjct: 783 VSLLMAQLNGLVDAGNTVIMVEHDMQVASNSDWIIDIGPGAGDEGGLIVAEGTPAEVAKS 842 Query: 440 AESITAKYLL 449 S TA +LL Sbjct: 843 KASRTAPFLL 852 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,426,711,870 Number of extensions: 137789395 Number of successful extensions: 514356 Number of sequences better than 1.0e-05: 2527 Number of HSP's gapped: 511437 Number of HSP's successfully gapped: 6737 Length of query: 606 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 464 Effective length of database: 1,722,912,073 Effective search space: 799431201872 Effective search space used: 799431201872 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)