BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0489.0019.p (195 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q17ZT9.1 Q17ZT9_CLOD6 Putative excinuclease ABC subunit A 210 5e-53 Q24YC6.1 Q24YC6_DESHY Putative uncharacterized protein 192 9e-48 B8FST5.1 B8FST5_DESHD ABC transporter related 192 9e-48 Q2FPB8.1 Q2FPB8_METHJ Excinuclease ABC subunit A 191 3e-47 A6VK30.1 A6VK30_METM7 Excinuclease ABC, A subunit 190 6e-47 >Q17ZT9.1 Q17ZT9_CLOD6 Putative excinuclease ABC subunit A Length = 806 Score = 210 bits (535), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 102/194 (52%), Positives = 136/194 (70%), Gaps = 1/194 (0%) Query: 2 CNGYGHIKRWL-SQLVFSEECPSCQGKRFKDEVLRVKYKQRSIADILAMSVTEAQAFFQD 60 C+G G+ K WL + L C CQGKRF DE L +KYK ++I DIL MSV+E+ FF+D Sbjct: 613 CSGSGYEKVWLGNNLSIDHICSECQGKRFNDESLSIKYKNKNIHDILNMSVSESVHFFKD 672 Query: 61 QPKISSLLTAIEEMGMGYIHLGQSLTTLSGGEVQRLKLARELGKSGKVNYLYILDEPTVG 120 P I S L +E++GMGYI LGQ TLSGGE QR+KLA+E+GK N LY+LDEPT G Sbjct: 673 IPNIVSHLNVLEQIGMGYIKLGQPTPTLSGGESQRIKLAKEIGKKRNGNILYVLDEPTTG 732 Query: 121 LSYYDAEKLLMILSKLVAGKHSVILIEHDPYVLSYCDYLIELGPGAGHKGGEIVATGTPE 180 LS YD KL+ +L +LV +SVI++EHD VL+ CD+++ELGP G KGG I+A G+P+ Sbjct: 733 LSLYDTSKLIQLLDELVENGNSVIVVEHDIDVLNVCDWIVELGPEGGDKGGYIIAEGSPK 792 Query: 181 EVKKHAGSMIGPFL 194 +K++ S+ G +L Sbjct: 793 TLKENPKSITGRYL 806 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 99/188 (52%), Gaps = 15/188 (7%) Query: 21 CPSCQGKRFKDEVLRVKYKQRSIADILAMSVTEAQAFFQ---DQPKISSLLTAIE----- 72 C C G + +E RV + I ++ M++ E F + +Q +++ T + Sbjct: 256 CSDCNGFKIGEEARRVLLNGKHIGELGKMTILEIDDFLKLLINQGNLNTFGTNLVNDILS 315 Query: 73 ------EMGMGYIHLGQSLTTLSGGEVQRLKLARELGKSGKVNYLYILDEPTVGLSYYDA 126 E +G++ L + ++TLSGGE+QRL L L S + +Y+LDEPT GL + Sbjct: 316 KTQHLIESRLGHLSLYREMSTLSGGEMQRLFLNSHL-DSEMDSLIYVLDEPTAGLHESEK 374 Query: 127 EKLLMILSKLVAGKHSVILIEHDPYVLSYCDYLIELGPGAGHKGGEIVATGTPEEVKKHA 186 +L L KL ++VI++EHD + +++I++GP AG +GG++V G E + + Sbjct: 375 IDILKSLKKLKDLGNTVIVVEHDKNTIEMAEHIIDIGPKAGVEGGQLVYQGDLEGLLQSD 434 Query: 187 GSMIGPFL 194 S+ G +L Sbjct: 435 KSLTGQYL 442 >Q24YC6.1 Q24YC6_DESHY Putative uncharacterized protein Length = 820 Score = 192 bits (489), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 98/198 (49%), Positives = 136/198 (68%), Gaps = 9/198 (4%) Query: 2 CNGYGHIKRWLSQLVFSEE----CPSCQGKRFKDEVLRVKYKQRSIADILAMSVTEAQAF 57 C G G++ +S ++F E+ CP C G +F+DEVL VKY+ SI D+L MSV EA A Sbjct: 627 CEGLGYV---VSNMLFFEDLEVSCPVCHGDQFQDEVLSVKYQGHSIKDVLGMSVEEALAV 683 Query: 58 FQDQPKISSLLTAIEEMGMGYIHLGQSLTTLSGGEVQRLKLAREL-GKSGKVNYLYILDE 116 F P+I+ +L +EE+G+GY+ LGQ+LTTLSGGE QRLKLA+EL G GK N LY++DE Sbjct: 684 FALHPRITKVLELLEEVGLGYLELGQTLTTLSGGEGQRLKLAKELIGNEGKTN-LYLIDE 742 Query: 117 PTVGLSYYDAEKLLMILSKLVAGKHSVILIEHDPYVLSYCDYLIELGPGAGHKGGEIVAT 176 PT GL D E L +L+++V +VI++EH+ V+ D++I+LGP GHKGG ++A Sbjct: 743 PTTGLHPLDVENFLALLNRMVDAGSTVIVVEHNQQVMQASDWIIDLGPEGGHKGGRVMAV 802 Query: 177 GTPEEVKKHAGSMIGPFL 194 GTPE++K S+ G FL Sbjct: 803 GTPEQIKSEPDSVTGRFL 820 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 110/202 (54%), Gaps = 17/202 (8%) Query: 10 RWLSQLVFSEECPSCQGKRFKDEVLRVKYKQRSIADILAMSVTEAQAFF---------QD 60 R LS + CP C G+R V + ++ ++S+ E Q + Sbjct: 285 RGLSAYFAEQICPDCAGERLNGLSRSVTVLGTRLPELASLSLEELQDWLIKLEDSVTGTH 344 Query: 61 QPKISSLLTAIE-------EMGMGYIHLGQSLTTLSGGEVQRLKLARELGKSGKVNYLYI 113 Q ++S L ++ ++G+GY+ L + TLSGGE QR+KLA L S +YI Sbjct: 345 QDLVASYLNDLKTKIRRIIKVGLGYLSLDRQTMTLSGGEAQRIKLAATL-DSTLTGIIYI 403 Query: 114 LDEPTVGLSYYDAEKLLMILSKLVAGKHSVILIEHDPYVLSYCDYLIELGPGAGHKGGEI 173 +DEPT+GL D + ++ IL +L ++VI+IEHD V+S D+++++GPGAG GGEI Sbjct: 404 MDEPTIGLHPQDTQGIIQILKELRDLGNTVIVIEHDMDVMSAADFIVDIGPGAGKLGGEI 463 Query: 174 VATGTPEEVKKHAGSMIGPFLE 195 V G+ +E+K+ S+ G +L Sbjct: 464 VGQGSIDELKEQGRSVTGLYLN 485 >B8FST5.1 B8FST5_DESHD ABC transporter related Length = 820 Score = 192 bits (489), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 98/198 (49%), Positives = 136/198 (68%), Gaps = 9/198 (4%) Query: 2 CNGYGHIKRWLSQLVFSEE----CPSCQGKRFKDEVLRVKYKQRSIADILAMSVTEAQAF 57 C G G++ +S ++F E+ CP C G +F+DEVL VKY+ SI D+L MSV EA A Sbjct: 627 CEGLGYV---VSNMLFFEDLEVSCPVCHGDQFQDEVLSVKYQGHSIKDVLGMSVEEALAV 683 Query: 58 FQDQPKISSLLTAIEEMGMGYIHLGQSLTTLSGGEVQRLKLAREL-GKSGKVNYLYILDE 116 F P+I+ +L +EE+G+GY+ LGQ+LTTLSGGE QRLKLA+EL G GK N LY++DE Sbjct: 684 FALHPRITKVLELLEEVGLGYLELGQTLTTLSGGEGQRLKLAKELIGNEGKTN-LYLIDE 742 Query: 117 PTVGLSYYDAEKLLMILSKLVAGKHSVILIEHDPYVLSYCDYLIELGPGAGHKGGEIVAT 176 PT GL D E L +L+++V +VI++EH+ V+ D++I+LGP GHKGG ++A Sbjct: 743 PTTGLHPLDVENFLALLNRMVDAGSTVIVVEHNQQVMQASDWIIDLGPEGGHKGGRVMAV 802 Query: 177 GTPEEVKKHAGSMIGPFL 194 GTPE++K S+ G FL Sbjct: 803 GTPEQIKSEPDSVTGRFL 820 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 110/202 (54%), Gaps = 17/202 (8%) Query: 10 RWLSQLVFSEECPSCQGKRFKDEVLRVKYKQRSIADILAMSVTEAQAFF---------QD 60 R LS + CP C G+R V + ++ ++S+ E Q + Sbjct: 285 RGLSAYFAEQICPDCAGERLNGLSRSVTVLGTRLPELASLSLEELQDWLIKLEDSVTGTH 344 Query: 61 QPKISSLLTAIE-------EMGMGYIHLGQSLTTLSGGEVQRLKLARELGKSGKVNYLYI 113 Q ++S L ++ ++G+GY+ L + TLSGGE QR+KLA L S +YI Sbjct: 345 QDLVASYLNDLKTKIRRIIKVGLGYLSLDRQTMTLSGGEAQRIKLAATL-DSTLTGIIYI 403 Query: 114 LDEPTVGLSYYDAEKLLMILSKLVAGKHSVILIEHDPYVLSYCDYLIELGPGAGHKGGEI 173 +DEPT+GL D + ++ IL +L ++VI+IEHD V+S D+++++GPGAG GGEI Sbjct: 404 MDEPTIGLHPQDTQGIIQILKELRDLGNTVIVIEHDMDVMSAADFIVDIGPGAGKLGGEI 463 Query: 174 VATGTPEEVKKHAGSMIGPFLE 195 V G+ +E+K+ S+ G +L Sbjct: 464 VGQGSIDELKEQGRSVTGLYLN 485 >Q2FPB8.1 Q2FPB8_METHJ Excinuclease ABC subunit A Length = 953 Score = 191 bits (485), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 100/196 (51%), Positives = 128/196 (65%), Gaps = 5/196 (2%) Query: 2 CNGYGHIK---RWLSQLVFSEECPSCQGKRFKDEVLRVKYKQRSIADILAMSVTEAQAFF 58 C G G IK +L + EC C+G R+ E L VKYK +SIAD+LAMSV EA F Sbjct: 735 CQGDGLIKIEMNFLPDVYI--ECEECKGTRYNRETLEVKYKDKSIADVLAMSVDEAIELF 792 Query: 59 QDQPKISSLLTAIEEMGMGYIHLGQSLTTLSGGEVQRLKLARELGKSGKVNYLYILDEPT 118 PKI + L + ++G+GYI LGQS TTLSGGE QR+KL REL K +Y+LDEPT Sbjct: 793 SAIPKIRNKLQTLIDVGLGYIKLGQSATTLSGGEAQRIKLTRELSKRATGQTVYLLDEPT 852 Query: 119 VGLSYYDAEKLLMILSKLVAGKHSVILIEHDPYVLSYCDYLIELGPGAGHKGGEIVATGT 178 GL ++D KL+ + S+LVA ++VI+IEH+ V+ DY+I+LGP G GGEI+ATGT Sbjct: 853 TGLHFHDVRKLIQVFSELVAKGNTVIVIEHNLDVIKSADYIIDLGPEGGDAGGEIIATGT 912 Query: 179 PEEVKKHAGSMIGPFL 194 PEEV + S G FL Sbjct: 913 PEEVAGNPASYTGMFL 928 Score = 149 bits (377), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 77/200 (38%), Positives = 125/200 (62%), Gaps = 15/200 (7%) Query: 9 KRWLSQLVFSEECPSCQGKRFKDEVLRVKYKQRSIADILAMSVTEAQAFFQDQ------- 61 KR L + + C +C+GKR KD++L V+ K +SI D+ +S+T + AFF + Sbjct: 389 KRELEKFMKITPCQTCKGKRLKDKILAVRIKDKSIIDLTDLSITASIAFFNNLELSEKET 448 Query: 62 -------PKISSLLTAIEEMGMGYIHLGQSLTTLSGGEVQRLKLARELGKSGKVNYLYIL 114 +I S LT +E +G+GY+ L +S TLSGGE QR++LA ++G + + LY+L Sbjct: 449 EIARQILKEILSRLTFLERVGLGYLTLSRSAGTLSGGEAQRIRLATQIG-ANLMGVLYVL 507 Query: 115 DEPTVGLSYYDAEKLLMILSKLVAGKHSVILIEHDPYVLSYCDYLIELGPGAGHKGGEIV 174 DEP++GL D +L+ L +L +++I++EHD + D++I++GPGAG GGEI+ Sbjct: 508 DEPSIGLHQRDNNRLIDTLRQLRDLGNTLIVVEHDEDTIRAADWVIDMGPGAGLNGGEII 567 Query: 175 ATGTPEEVKKHAGSMIGPFL 194 A GTP E++++ S+ G +L Sbjct: 568 AEGTPHEIEQNERSLTGAYL 587 >A6VK30.1 A6VK30_METM7 Excinuclease ABC, A subunit Length = 951 Score = 190 bits (482), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 98/196 (50%), Positives = 136/196 (69%), Gaps = 3/196 (1%) Query: 2 CNGYGHIKRWLSQL--VFSEECPSCQGKRFKDEVLRVKYKQRSIADILAMSVTEAQAFFQ 59 C G G IK ++ L VF E C C+G R+ E L VKYK++SI+D+L MSV EA+ F+ Sbjct: 751 CQGDGVIKIEMNFLPDVFVE-CEECKGARYNRETLEVKYKEKSISDVLNMSVEEAREHFK 809 Query: 60 DQPKISSLLTAIEEMGMGYIHLGQSLTTLSGGEVQRLKLARELGKSGKVNYLYILDEPTV 119 + P+IS+ L + ++G+GYI LGQS TTLSGGE QR+KL REL K N +Y+LDEPT Sbjct: 810 NIPQISTKLKTLCDVGLGYIKLGQSSTTLSGGEAQRIKLTRELSKRATGNTIYLLDEPTT 869 Query: 120 GLSYYDAEKLLMILSKLVAGKHSVILIEHDPYVLSYCDYLIELGPGAGHKGGEIVATGTP 179 GL ++D +KL+ +L+ LV ++V++IEH+ V+ D++I+LGP G GGEI+ATGTP Sbjct: 870 GLHFHDVKKLIDVLNSLVEKGNTVVVIEHNLDVIKCADHIIDLGPEGGDFGGEIIATGTP 929 Query: 180 EEVKKHAGSMIGPFLE 195 EE+ K S G FL+ Sbjct: 930 EEISKCKESHTGKFLK 945 Score = 145 bits (366), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 73/200 (36%), Positives = 120/200 (60%), Gaps = 15/200 (7%) Query: 9 KRWLSQLVFSEECPSCQGKRFKDEVLRVKYKQRSIADILAMSVTEAQAFFQDQP------ 62 ++ L + + CP C GKR KD+ L VK + +SI D+ +S+++A+ FF + Sbjct: 393 RKELEKFMTVSLCPKCGGKRLKDKALAVKIEDKSIIDLTDLSISKAEEFFNNLKLTDKEY 452 Query: 63 --------KISSLLTAIEEMGMGYIHLGQSLTTLSGGEVQRLKLARELGKSGKVNYLYIL 114 +I S L + ++G+GY+ L + TLSGGE QR++LA ++G S LY+L Sbjct: 453 EIAKQVIKEIKSRLKFLNDVGLGYLTLSRRSGTLSGGEAQRIRLATQIG-SNLTGVLYVL 511 Query: 115 DEPTVGLSYYDAEKLLMILSKLVAGKHSVILIEHDPYVLSYCDYLIELGPGAGHKGGEIV 174 DEP++GL D +KL+ L KL ++++++EHD + DY++++GPGAG GG++V Sbjct: 512 DEPSIGLHQRDNQKLIETLHKLRNLDNTLVVVEHDEDTILNADYVVDMGPGAGVHGGDVV 571 Query: 175 ATGTPEEVKKHAGSMIGPFL 194 GTP E+ K+ S+ G +L Sbjct: 572 TVGTPTEISKNKDSLTGKYL 591 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.138 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,183,769,372 Number of extensions: 46121644 Number of successful extensions: 233876 Number of sequences better than 1.0e-05: 2628 Number of HSP's gapped: 238222 Number of HSP's successfully gapped: 4954 Length of query: 195 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 67 Effective length of database: 1,854,806,283 Effective search space: 124272020961 Effective search space used: 124272020961 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)