BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0489.0006.p
         (166 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B8I979.1 B8I979_CLOCE Amino acid adenylation domain protein           115   1e-24
C3HA44.1 C3HA44_BACTU Hybrid nonribosomal peptide synthetase/pol...   108   2e-22
B9E3Q1.1 B9E3Q1_CLOK1 Putative uncharacterized protein                106   6e-22
A5MZS1.1 A5MZS1_CLOK5 Predicted hybrid nonribosomal peptide synt...   106   6e-22
C0ZEG3.1 C0ZEG3_BREBN Putative mixed polyketide synthase/non-rib...   105   1e-21

>B8I979.1 B8I979_CLOCE Amino acid adenylation domain protein
          Length = 3739

 Score =  115 bits (288), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/118 (46%), Positives = 80/118 (67%), Gaps = 1/118 (0%)

Query: 25  ILKEIKQAGVKKQHKDIAVIGMAGRFPGASNVDEYWNNLLYEVDCIGDFPESRQKGVEGF 84
           +L+ +K  G KK +KD+A+IG++ + P A+++DEYW+NL   VDCI  FP SR+K VEGF
Sbjct: 25  LLESLKINGNKK-YKDVAIIGISAKLPNANDIDEYWSNLEKGVDCIRPFPPSRRKDVEGF 83

Query: 85  IQKSVPDSLQKITYEKGGYLEQIDQFDSGYFKISNKESEMMDPIQRLLLTTVMESIED 142
           I         +I Y  GG+L+++D+FD  +F++  KE+  MDP QRL L T  E+IED
Sbjct: 84  ILHYTSAKKGEIKYSHGGFLDEVDKFDYKFFRLLPKEANTMDPNQRLFLQTAWEAIED 141


>C3HA44.1 C3HA44_BACTU Hybrid nonribosomal peptide synthetase/polyketide
           synthase
          Length = 2216

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/119 (42%), Positives = 80/119 (67%), Gaps = 6/119 (5%)

Query: 25  ILKEIKQAGVKKQHKDIAVIGMAGRFPGASNVDEYWNNLLYEVDCIGDFPESRQKGVEGF 84
           ILKE+     +K ++DIAVIG++GRF  ++N+ EYWNN+L    CI D P+ R+  ++  
Sbjct: 28  ILKELSNKS-QKSNRDIAVIGISGRFAESNNIKEYWNNILNRTCCIRDLPQQRRIDIDPL 86

Query: 85  IQKSVPDSLQKITYEKGGYLEQIDQFDSGYFKISNKESEMMDPIQRLLLTTVMESIEDA 143
           +         K +Y K G+L++ID+FDS +F+IS +E+ +MDP QR+ L TV ++IED+
Sbjct: 87  LNNP-----NKNSYFKAGFLDEIDKFDSAFFRISPREAMLMDPKQRMFLETVYQAIEDS 140


>B9E3Q1.1 B9E3Q1_CLOK1 Putative uncharacterized protein
          Length = 1190

 Score =  106 bits (265), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 76/105 (72%), Gaps = 1/105 (0%)

Query: 39  KDIAVIGMAGRFPGASNVDEYWNNLLYEVDCIGDFPESRQKGVEGFIQKSVPDSLQKITY 98
           KDIA+IGMA  FP A +++E+W+NL+   DCIG+FPE R++ ++ ++   +  S  KI Y
Sbjct: 28  KDIAIIGMAATFPKAEDLNEFWSNLVDGKDCIGNFPEKRKEDIDKYLN-YIGMSKDKIKY 86

Query: 99  EKGGYLEQIDQFDSGYFKISNKESEMMDPIQRLLLTTVMESIEDA 143
            + GYL++ID+FD  +F+++ KE+ +M+P QRL L T  ++IEDA
Sbjct: 87  LQAGYLDEIDKFDCRFFRLTPKEASLMNPSQRLFLQTAWKTIEDA 131


>A5MZS1.1 A5MZS1_CLOK5 Predicted hybrid nonribosomal peptide
           synthetase/polyketide synthase
          Length = 1190

 Score =  106 bits (265), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 48/105 (45%), Positives = 76/105 (72%), Gaps = 1/105 (0%)

Query: 39  KDIAVIGMAGRFPGASNVDEYWNNLLYEVDCIGDFPESRQKGVEGFIQKSVPDSLQKITY 98
           KDIA+IGMA  FP A +++E+W+NL+   DCIG+FPE R++ ++ ++   +  S  KI Y
Sbjct: 28  KDIAIIGMAATFPKAEDLNEFWSNLVDGKDCIGNFPEKRKEDIDKYLN-YIGMSKDKIKY 86

Query: 99  EKGGYLEQIDQFDSGYFKISNKESEMMDPIQRLLLTTVMESIEDA 143
            + GYL++ID+FD  +F+++ KE+ +M+P QRL L T  ++IEDA
Sbjct: 87  LQAGYLDEIDKFDCRFFRLTPKEASLMNPSQRLFLQTAWKTIEDA 131


>C0ZEG3.1 C0ZEG3_BREBN Putative mixed polyketide synthase/non-ribosomal
           peptide synthetase
          Length = 2885

 Score =  105 bits (262), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/130 (42%), Positives = 76/130 (58%), Gaps = 3/130 (2%)

Query: 25  ILKEIKQAGVKKQHKDIAVIGMAGRFPGASNVDEYWNNLLYEVDCIGDFPESRQKGVEGF 84
           +LKE+  A V  + +DIA+IGMA RFPGA++++EYWNNL    D I D P +R+  VE  
Sbjct: 25  LLKELSSANVNTR-QDIAIIGMACRFPGANSLEEYWNNLKQGHDSISDIPAARRPDVERV 83

Query: 85  IQKSVPDSLQKITYEKGGYLEQIDQFDSGYFKISNKESEMMDPIQRLLLTTVMESIEDAX 144
            ++   D+     YE+ GYLE +D FD  +F+IS  E+  MDP QR+ L    E+ E A 
Sbjct: 84  AREFFNDT--DFQYERMGYLEHVDLFDHAFFEISPAEARTMDPYQRMFLELAWETFEHAG 141

Query: 145 XXXAAAGWSP 154
                   SP
Sbjct: 142 YSEKMISGSP 151


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 879,761,031
Number of extensions: 33771327
Number of successful extensions: 65613
Number of sequences better than 1.0e-05: 2250
Number of HSP's gapped: 62639
Number of HSP's successfully gapped: 3242
Length of query: 166
Length of database: 3,060,696,203
Length adjustment: 125
Effective length of query: 41
Effective length of database: 1,883,069,328
Effective search space: 77205842448
Effective search space used: 77205842448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)