BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0488.0002.p (261 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A1HMF9.1 A1HMF9_9FIRM Putative uncharacterized protein 242 2e-62 C2NTF5.1 C2NTF5_BACCE Integral membrane protein 217 8e-55 C3FER2.1 C3FER2_BACTB Integral membrane protein 216 1e-54 C3CW76.1 C3CW76_BACTU Integral membrane protein 216 1e-54 C3CD82.1 C3CD82_BACTU Integral membrane protein 216 1e-54 >A1HMF9.1 A1HMF9_9FIRM Putative uncharacterized protein Length = 254 Score = 242 bits (617), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 131/254 (51%), Positives = 165/254 (64%) Query: 8 MEHGSMAMIAILVICGFLAGVIDSVVXXXXXXXXXXXXXXXXXXXXXXXXNKLAGTLCSF 67 ME+ S+ M+ L+ GF A IDSVV NKLA +C+ Sbjct: 1 MENISLEMVLFLLGAGFAASFIDSVVGGGGLISLPALLLTGLPPNLALGTNKLASVMCTL 60 Query: 68 TSTASFVRSGKINFGLVKFLIPFSIVGAVGGSLTVRQVPSEFLKPLVIVMLIVITVYTLF 127 TST SF+RSGK+N G VK+L P S GAV G VR +P +FL+PLVIVMLI + VY L Sbjct: 61 TSTISFIRSGKVNLGAVKYLFPLSFFGAVAGVYVVRHMPPQFLRPLVIVMLIAVAVYILV 120 Query: 128 KKSWGDVSTFSADSRKTLLTGMGIALVIGFYDGFFGPGTGSFLIFAFLMLGFEFVTAAGN 187 KK WG ST+ ++KT L AL++GFYDGFFGPGTGSFLIFAFL+LGF+FV AAGN Sbjct: 121 KKDWGKESTYRGFTKKTGLLSGLAALLLGFYDGFFGPGTGSFLIFAFLLLGFDFVEAAGN 180 Query: 188 AKVLNFASNIASLLTFAAXXXXXXXXXXXXXXPMVIGAIVGSRIAIHKGASYIRPLFITV 247 AK+LNFASNIA+++TF M+ GA+ GSR+AI +G +Y+RPLFI+V Sbjct: 181 AKILNFASNIAAIVTFMLLKSVNYQYGLIMGAGMIGGALAGSRLAIRQGVAYVRPLFISV 240 Query: 248 TVILIGKQIWDTMH 261 T +LIGKQ+WD +H Sbjct: 241 TGLLIGKQLWDLIH 254 >C2NTF5.1 C2NTF5_BACCE Integral membrane protein Length = 256 Score = 217 bits (553), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 120/255 (47%), Positives = 160/255 (62%), Gaps = 2/255 (0%) Query: 8 MEHGSMAMIAILVICGFLAGVIDSVVXXXXXXXXXXXXXXXXXXXXXXXXNKLAGTLCSF 67 ME S +I +L+ GFLA IDSVV NKLA T+ +F Sbjct: 1 MEELSFQVIILLIAFGFLAAFIDSVVGGGGLISLPALMFVGLSPASAIATNKLAATMGTF 60 Query: 68 TSTASFVRSGKINFGLVKFLIPFSIVGAVGGSLTVRQVPSEFLKPLVIVMLIVITVYTLF 127 TS F+RSGK++F +V+ LIP +IVGAV G+L V+ +PS+ L+PLV+VML+ I +Y + Sbjct: 61 TSAMYFIRSGKVDFKIVEKLIPLTIVGAVAGALVVKFIPSDILRPLVLVMLVFIAIYIIA 120 Query: 128 KKSWGDVSTFSA-DSRKTLLTGMGIALVIGFYDGFFGPGTGSFLIFAFLMLGFEFVTAAG 186 KK+WG VST+ RKTL+ I L+IGFYDGFFGPGTGSFLIFAFL++G +F+ AA Sbjct: 121 KKNWGSVSTYKKMTQRKTLIFFFAI-LMIGFYDGFFGPGTGSFLIFAFLLIGLDFIQAAA 179 Query: 187 NAKVLNFASNIASLLTFAAXXXXXXXXXXXXXXPMVIGAIVGSRIAIHKGASYIRPLFIT 246 + K+LNF SNI SL+TF M++GA GS+ A+ KG Y+R LF+ Sbjct: 180 SGKLLNFVSNIVSLITFLFLDIIHFEYGIIMGLSMILGAYFGSKFAVQKGVGYVRTLFLL 239 Query: 247 VTVILIGKQIWDTMH 261 VT++LIGK I + H Sbjct: 240 VTILLIGKNILEYTH 254 >C3FER2.1 C3FER2_BACTB Integral membrane protein Length = 256 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 115/254 (45%), Positives = 159/254 (62%) Query: 8 MEHGSMAMIAILVICGFLAGVIDSVVXXXXXXXXXXXXXXXXXXXXXXXXNKLAGTLCSF 67 ME S +I +L+ GFLA IDSVV NKLA T+ +F Sbjct: 1 MEELSFQVIILLIAFGFLAAFIDSVVGGGGLISLPALMFVGLSPASAIATNKLAATMGTF 60 Query: 68 TSTASFVRSGKINFGLVKFLIPFSIVGAVGGSLTVRQVPSEFLKPLVIVMLIVITVYTLF 127 TS F+RSGK++F +V LIP +IVGAV G+L V+ +PS+ L+PLV+VML+ I +Y + Sbjct: 61 TSAMYFIRSGKVDFKIVGKLIPLTIVGAVAGALVVKFIPSDILRPLVLVMLVFIAIYIIA 120 Query: 128 KKSWGDVSTFSADSRKTLLTGMGIALVIGFYDGFFGPGTGSFLIFAFLMLGFEFVTAAGN 187 KK+WG VST+ +++ L + L+IGFYDGFFGPGTGSFLIFAFL++G +F+ AA + Sbjct: 121 KKNWGSVSTYKKMTQRKTLIFFFVILMIGFYDGFFGPGTGSFLIFAFLLIGLDFIQAAAS 180 Query: 188 AKVLNFASNIASLLTFAAXXXXXXXXXXXXXXPMVIGAIVGSRIAIHKGASYIRPLFITV 247 K+LNF SNI SL+TF M++GA +GS+ A+ KG Y+R LF+ V Sbjct: 181 GKLLNFVSNIVSLITFLFLDIIHFEYGIIMGLSMILGAYLGSKFAVQKGVGYVRTLFLLV 240 Query: 248 TVILIGKQIWDTMH 261 T++LIGK + + H Sbjct: 241 TILLIGKNVLEYTH 254 >C3CW76.1 C3CW76_BACTU Integral membrane protein Length = 256 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 115/254 (45%), Positives = 159/254 (62%) Query: 8 MEHGSMAMIAILVICGFLAGVIDSVVXXXXXXXXXXXXXXXXXXXXXXXXNKLAGTLCSF 67 ME S +I +L+ GFLA IDSVV NKLA T+ +F Sbjct: 1 MEELSFQVIILLIAFGFLAAFIDSVVGGGGLISLPALMFVGLSPASAIATNKLAATMGTF 60 Query: 68 TSTASFVRSGKINFGLVKFLIPFSIVGAVGGSLTVRQVPSEFLKPLVIVMLIVITVYTLF 127 TS F+RSGK++F +V LIP +IVGAV G+L V+ +PS+ L+PLV+VML+ I +Y + Sbjct: 61 TSAMYFIRSGKVDFKIVGKLIPLTIVGAVAGALVVKFIPSDILRPLVLVMLVFIAIYIIA 120 Query: 128 KKSWGDVSTFSADSRKTLLTGMGIALVIGFYDGFFGPGTGSFLIFAFLMLGFEFVTAAGN 187 KK+WG VST+ +++ L + L+IGFYDGFFGPGTGSFLIFAFL++G +F+ AA + Sbjct: 121 KKNWGSVSTYKKMTQRKTLIFFFVILMIGFYDGFFGPGTGSFLIFAFLLIGLDFIQAAAS 180 Query: 188 AKVLNFASNIASLLTFAAXXXXXXXXXXXXXXPMVIGAIVGSRIAIHKGASYIRPLFITV 247 K+LNF SNI SL+TF M++GA +GS+ A+ KG Y+R LF+ V Sbjct: 181 GKLLNFVSNIVSLITFLFLDIIHFEYGIIMGLSMILGAYLGSKFAVQKGVGYVRTLFLLV 240 Query: 248 TVILIGKQIWDTMH 261 T++LIGK + + H Sbjct: 241 TILLIGKNVLEYTH 254 >C3CD82.1 C3CD82_BACTU Integral membrane protein Length = 256 Score = 216 bits (551), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 115/254 (45%), Positives = 159/254 (62%) Query: 8 MEHGSMAMIAILVICGFLAGVIDSVVXXXXXXXXXXXXXXXXXXXXXXXXNKLAGTLCSF 67 ME S +I +L+ GFLA IDSVV NKLA T+ +F Sbjct: 1 MEELSFQVIILLIAFGFLAAFIDSVVGGGGLISLPALMFVGLSPASAIATNKLAATMGTF 60 Query: 68 TSTASFVRSGKINFGLVKFLIPFSIVGAVGGSLTVRQVPSEFLKPLVIVMLIVITVYTLF 127 TS F+RSGK++F +V LIP +IVGAV G+L V+ +PS+ L+PLV+VML+ I +Y + Sbjct: 61 TSAMYFIRSGKVDFKIVGKLIPLTIVGAVAGALVVKFIPSDILRPLVLVMLVFIAIYIIA 120 Query: 128 KKSWGDVSTFSADSRKTLLTGMGIALVIGFYDGFFGPGTGSFLIFAFLMLGFEFVTAAGN 187 KK+WG VST+ +++ L + L+IGFYDGFFGPGTGSFLIFAFL++G +F+ AA + Sbjct: 121 KKNWGSVSTYKKMTQRKTLIFFFVILMIGFYDGFFGPGTGSFLIFAFLLIGLDFIQAAAS 180 Query: 188 AKVLNFASNIASLLTFAAXXXXXXXXXXXXXXPMVIGAIVGSRIAIHKGASYIRPLFITV 247 K+LNF SNI SL+TF M++GA +GS+ A+ KG Y+R LF+ V Sbjct: 181 GKLLNFVSNIVSLITFLFLDIIHFEYGIIMGLSMILGAYLGSKFAVQKGVGYVRTLFLLV 240 Query: 248 TVILIGKQIWDTMH 261 T++LIGK + + H Sbjct: 241 TILLIGKNVLEYTH 254 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.143 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,183,441,818 Number of extensions: 41014676 Number of successful extensions: 151862 Number of sequences better than 1.0e-05: 859 Number of HSP's gapped: 149336 Number of HSP's successfully gapped: 859 Length of query: 261 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 128 Effective length of database: 1,807,701,208 Effective search space: 231385754624 Effective search space used: 231385754624 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)