BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0487.0005.p (292 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0GCH9.1 C0GCH9_9FIRM 4Fe-4S ferredoxin, iron-sulfur binding dom... 227 1e-57 B3JYH1.1 B3JYH1_9DELT Iron-sulfur cluster-binding protein 226 2e-57 Q74F35.1 Q74F35_GEOSL Iron-sulfur cluster-binding protein 225 3e-57 B5E9Z1.1 B5E9Z1_GEOBB Iron-sulfur cluster-binding protein 224 6e-57 B9M4P9.1 B9M4P9_GEOSF Iron-sulfur cluster-binding protein 222 3e-56 >C0GCH9.1 C0GCH9_9FIRM 4Fe-4S ferredoxin, iron-sulfur binding domain protein Length = 274 Score = 227 bits (578), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 122/281 (43%), Positives = 160/281 (56%), Gaps = 8/281 (2%) Query: 8 MRALIAAEMKTYVSEDEGNFCEELQSPYFEDPIVQFAAAHDSLFEEYKRVVGPDHATPQE 67 M+ +I E+K +V+ E N PYF +P++ +A A D LF +YK ++G H TP E Sbjct: 1 MKDIIELEIKRFVNNSEHNRLTATDKPYFIEPLIGYADALDPLFTDYKEIIGDFHLTPAE 60 Query: 68 AFERSFGTGSFDEGTVISVVLPISEKIRKANRAQKARASKEWALLRTFGDEYFIRSARQH 127 F FG SF GTVIS +LPI+ +I ++NR S+EWA R FG E F R+H Sbjct: 61 FFAAEFGVSSFAAGTVISWILPINREIIESNRLHSRYPSREWAHTRYFG-EMFNNKLREH 119 Query: 128 LAGYLTGLGYRAVAP-LDTEWYSINGAAGGPVSNWSERHIAYAAGLGTFSINDGFISEKG 186 L + + G+RAVAP + EW ++ G S WSERH AYA GLGTFS+ND I+EKG Sbjct: 120 LQKFFSSKGFRAVAPSISKEWSRVHSERTGLASTWSERHAAYACGLGTFSLNDALITEKG 179 Query: 187 IAIRLLSVVTDLQVPPDMRASSVLGHTGNCLLCSKGICGVCITRCPVQAISKEGGHDKIA 246 IA R S++ + ++ P R G CL C+ CG CI RCP AI+ E GHDK Sbjct: 180 IAHRCGSIIVEAKLAPTPRVYQ--GPYEYCLYCTSKKCGACIKRCPAGAIT-EKGHDKEK 236 Query: 247 CMKFVYGEESREWAVLNGGEAKSGAGCGLCQTKVPCESRNP 287 C + E + V N +GCGLCQTKVPCE + P Sbjct: 237 CFNYTRNE---VYPVYNKEYGVGISGCGLCQTKVPCEQKIP 274 >B3JYH1.1 B3JYH1_9DELT Iron-sulfur cluster-binding protein Length = 275 Score = 226 bits (576), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 133/285 (46%), Positives = 167/285 (58%), Gaps = 15/285 (5%) Query: 8 MRALIAAEMKTYVSEDEGNFCEELQSPYFEDPIVQFAAAHDSLFEEYKRVVGPDHATPQE 67 M +I+AE++ +V E+ GN E YF+DP+V FAAA D LF EYK V+G H TP+E Sbjct: 1 MNEMISAEIRRFVQEESGNRFAESGERYFDDPLVGFAAADDPLFLEYKEVIGEFHLTPEE 60 Query: 68 AFERSFGTGSFDEGTVISVVLPISEKIRKANRAQKARASKEWALLRTFGDEYFIRSARQH 127 E + G G + +VI LPI+E R NR + S+ WA R G E F S R+H Sbjct: 61 LTETAEG-GCWHPRSVICWALPITETTRAGNRTETVYPSRAWAQTRHHG-EAFNASLRRH 118 Query: 128 LAGYLTGLGYRAVAP-LDTEWYSINGAAGGPVSNWSERHIAYAAGLGTFSINDGFISEKG 186 L +L G+RA+AP L W G S+WSERH AYAAGLGTFS+ND I+E+G Sbjct: 119 LVRFLVERGHRALAPQLHPGWREYGETPVGIASSWSERHAAYAAGLGTFSLNDALITERG 178 Query: 187 IAIRLLSVVTDLQVPPDMRASSVLGHTGNCLLCSKGICGVCITRCPVQAISKEGGHDKIA 246 IA RL +V+TDL + P R H NCL G CG CI RCPV A+SKE GHDK Sbjct: 179 IAHRLGTVITDLALTPSPRPYR--HHKINCLWHRNGTCGACIGRCPVGALSKE-GHDKRI 235 Query: 247 CMKFVYG----EESREWAVLNGGEAKSGAGCGLCQTKVPCESRNP 287 C VYG + + ++ V + + GCGLCQTKVPCE R P Sbjct: 236 CRDHVYGTIPAKVAEQYQVTS-----TSTGCGLCQTKVPCEGRIP 275 >Q74F35.1 Q74F35_GEOSL Iron-sulfur cluster-binding protein Length = 275 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 131/281 (46%), Positives = 162/281 (57%), Gaps = 16/281 (5%) Query: 8 MRALIAAEMKTYVSEDEGNFCEELQSPYFEDPIVQFAAAHDSLFEEYKRVVGPDHATPQE 67 M I+AE+ +V+E N + PYF+ P+V FAAA D LF EYKR++G H TP E Sbjct: 1 MDETISAEVGRFVAESPDNRFPDGSGPYFDQPLVGFAAAGDPLFTEYKRIIGEFHLTPAE 60 Query: 68 AFERSFGTGSFDEGTVISVVLPISEKIRKANRAQKARASKEWALLRTFGDEYFIRSARQH 127 E TVI VLP++E R +NR + S+ WAL RT G E + R+H Sbjct: 61 LLE--------GAATVIVWVLPVTESTRVSNRLETTWPSRSWALTRTHG-ETLNGALRRH 111 Query: 128 LAGYLTGLGYRAVAP-LDTEWYSINGAAGGPVSNWSERHIAYAAGLGTFSINDGFISEKG 186 L YL GLG+RAVAP W + G S WSERH AYAAGLGTFS++DG I+ +G Sbjct: 112 LVAYLEGLGHRAVAPQYSPAWREFSDTPVGIASTWSERHAAYAAGLGTFSLSDGLITGRG 171 Query: 187 IAIRLLSVVTDLQVPPDMRASSVLGHTGNCLLCSKGICGVCITRCPVQAISKEGGHDKIA 246 IA R+ SVVT L +P R + H NCL +G CGVCI RCPV AI+ GHDK Sbjct: 172 IAHRVGSVVTTLALPATPRTARTYRH--NCLWYREGTCGVCIGRCPVGAITF-AGHDKAR 228 Query: 247 CMKFVYGEESREWAVLNGGEAKSGAGCGLCQTKVPCESRNP 287 C + VYG A+L S GCGLCQT+VPCE+ P Sbjct: 229 CRELVYGSAP---ALLAERYGVSHTGCGLCQTRVPCEAGVP 266 >B5E9Z1.1 B5E9Z1_GEOBB Iron-sulfur cluster-binding protein Length = 273 Score = 224 bits (572), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 132/281 (46%), Positives = 165/281 (58%), Gaps = 9/281 (3%) Query: 8 MRALIAAEMKTYVSEDEGNFCEELQSPYFEDPIVQFAAAHDSLFEEYKRVVGPDHATPQE 67 M +I+AE++ +V E+ GN E YF+DP+V FAAA D LF +YK V+G H TP+E Sbjct: 1 MDEIISAEIRRFVQEESGNRFGESGERYFDDPLVGFAAADDPLFLKYKEVIGEFHLTPEE 60 Query: 68 AFERSFGTGSFDEGTVISVVLPISEKIRKANRAQKARASKEWALLRTFGDEYFIRSARQH 127 E + G G + TVI VLPI+E R +NR + S+ WA R G E F S R+H Sbjct: 61 LAETAEG-GCWHPRTVICWVLPITEATRASNRPETMYPSRAWAQTRHHG-ETFNTSLRRH 118 Query: 128 LAGYLTGLGYRAVAP-LDTEWYSINGAAGGPVSNWSERHIAYAAGLGTFSINDGFISEKG 186 L +L G+RA+AP L W G S+WSERH AYAAG GTFS+ND I+E+G Sbjct: 119 LVRFLVERGHRALAPQLHPGWREYGETPVGIASSWSERHAAYAAGFGTFSLNDALITERG 178 Query: 187 IAIRLLSVVTDLQVPPDMRASSVLGHTGNCLLCSKGICGVCITRCPVQAISKEGGHDKIA 246 IA RL +V+TDL + P R L H NCL G CG CI RCPV A+SKE GHDK Sbjct: 179 IAHRLGTVITDLALTPSPR--PYLHHKINCLWHRNGTCGACIGRCPVGALSKE-GHDKRI 235 Query: 247 CMKFVYGEESREWAVLNGGEAKSGAGCGLCQTKVPCESRNP 287 C VYG A + + GCGLCQT+VPCE + P Sbjct: 236 CRDHVYGTIP---AKVAEQYQVASTGCGLCQTRVPCEGKIP 273 >B9M4P9.1 B9M4P9_GEOSF Iron-sulfur cluster-binding protein Length = 270 Score = 222 bits (565), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 128/281 (45%), Positives = 167/281 (59%), Gaps = 16/281 (5%) Query: 8 MRALIAAEMKTYVSEDEGNFCEELQSPYFEDPIVQFAAAHDSLFEEYKRVVGPDHATPQE 67 M I ++++V +D GN ++PYF++P++ FA+A DSLF EYKR++GP H +P E Sbjct: 1 MEKTIIDLIRSFVRDDPGNRLSGNRAPYFDEPLIGFASAADSLFVEYKRIIGPFHHSPAE 60 Query: 68 AFERSFGTGSFDEGTVISVVLPISEKIRKANRAQKARASKEWALLRTFGDEYFIRSARQH 127 + TVIS VLPIS R+ NR ++ S+EWA+ R G E F S R+H Sbjct: 61 ILPGA--------KTVISWVLPISRVTRETNRQEEQWPSREWAVTRNSG-EAFNSSLRRH 111 Query: 128 LAGYLTGLGYRAVAP-LDTEWYSINGAAGGPVSNWSERHIAYAAGLGTFSINDGFISEKG 186 L +L G+RAVAP L W I+ G S WSERH AYAAGLGTFS+NDG I+ +G Sbjct: 112 LVAWLEEQGHRAVAPQLAPGWRQIDETPIGIASTWSERHAAYAAGLGTFSLNDGLITPRG 171 Query: 187 IAIRLLSVVTDLQVPPDMRASSVLGHTGNCLLCSKGICGVCITRCPVQAISKEGGHDKIA 246 IA RL SV+TDL + P R S L + NCL +G CG CI RCP A+S + GH+K Sbjct: 172 IAHRLGSVITDLSLAPTPRTS--LDYRHNCLWYRQGTCGACIGRCPAGALSFQ-GHNKSI 228 Query: 247 CMKFVYGEESREWAVLNGGEAKSGAGCGLCQTKVPCESRNP 287 C +VYG A G + GCGLCQT+V CE+ P Sbjct: 229 CRDYVYGAAPAAVAEAYG---VNQTGCGLCQTRVSCEAMVP 266 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,812,628,488 Number of extensions: 75675892 Number of successful extensions: 169326 Number of sequences better than 1.0e-05: 58 Number of HSP's gapped: 169179 Number of HSP's successfully gapped: 58 Length of query: 292 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 158 Effective length of database: 1,798,280,193 Effective search space: 284128270494 Effective search space used: 284128270494 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)