BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0487.0004.p
         (150 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1C905.1 B1C905_9FIRM Putative uncharacterized protein                119   7e-26
C0C0K5.1 C0C0K5_9CLOT Putative uncharacterized protein                115   2e-24
A6V8S4.1 A6V8S4_PSEA7 Probable transcriptional regulator              106   6e-22
Q02JC6.1 Q02JC6_PSEAB Putative transcriptional regulator, MarR f...   104   2e-21
B1M670.1 B1M670_METRJ Transcriptional regulator, MarR family          103   5e-21

>B1C905.1 B1C905_9FIRM Putative uncharacterized protein
          Length = 143

 Score =  119 bits (299), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 55/122 (45%), Positives = 84/122 (68%)

Query: 18  ACTCINLRRSSMAVTALYDRYLTPSGLNISQFSLLKHLTVLGPVSVSELALEMRLDRTTI 77
           +C CIN RR++ ++T  YD YL  +GL I+QFSLLK++  + P SVSE+A+++ L+RTT+
Sbjct: 8   SCYCINFRRAANSITKYYDNYLKKAGLTINQFSLLKNILKIEPASVSEIAVKVGLERTTV 67

Query: 78  VRNLKALEQCGYVQDTSVAGSRNRCLTLTESGRAAYNDAAELWEEAQRFLQASLGEEDLQ 137
           VRNLK+L +   ++D S    RN+ + LTE G+   N A  LWEEAQ+ ++  +G+E+  
Sbjct: 68  VRNLKSLFKERLIEDISEKFERNKKVRLTEKGKKTLNSAIPLWEEAQKDIENKIGKENFT 127

Query: 138 ML 139
            L
Sbjct: 128 NL 129


>C0C0K5.1 C0C0K5_9CLOT Putative uncharacterized protein
          Length = 135

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/128 (43%), Positives = 83/128 (64%)

Query: 12  LKPAVSACTCINLRRSSMAVTALYDRYLTPSGLNISQFSLLKHLTVLGPVSVSELALEMR 71
           +K     C CI +RR++ AVT+ YDR L P+G+ ++QFSLL +L+ LG  S+SELA  + 
Sbjct: 1   MKHNKGTCYCIGIRRAANAVTSFYDRALEPTGITVNQFSLLMNLSRLGSGSISELAAYVG 60

Query: 72  LDRTTIVRNLKALEQCGYVQDTSVAGSRNRCLTLTESGRAAYNDAAELWEEAQRFLQASL 131
           L+RTT+ R LK L + G+++D S  G R++ L LT  G+   N    LWE AQ  ++A L
Sbjct: 61  LERTTLTRTLKPLTERGFIKDVSEKGRRDKKLQLTSLGKETLNKGIPLWESAQSEIEARL 120

Query: 132 GEEDLQML 139
           G+E+L+  
Sbjct: 121 GKENLRWF 128


>A6V8S4.1 A6V8S4_PSEA7 Probable transcriptional regulator
          Length = 137

 Score =  106 bits (265), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 78/132 (59%)

Query: 19  CTCINLRRSSMAVTALYDRYLTPSGLNISQFSLLKHLTVLGPVSVSELALEMRLDRTTIV 78
           C C  LRR++ +V+  YD  L  +GL ++QFSLL+HL  L   S+SELA  M LDR+T+ 
Sbjct: 6   CLCTKLRRAARSVSRFYDEALADTGLKVAQFSLLRHLQRLDRPSISELAEAMGLDRSTLG 65

Query: 79  RNLKALEQCGYVQDTSVAGSRNRCLTLTESGRAAYNDAAELWEEAQRFLQASLGEEDLQM 138
           RNL+ LE  G ++       RNR + LT +G+AA       WE+AQR L   LGEE    
Sbjct: 66  RNLRVLENDGLLRLAGGEDQRNRLVELTPAGQAALERGLPAWEDAQRRLAGRLGEERSGA 125

Query: 139 LTTLLFKIENLS 150
           L  LL ++E L 
Sbjct: 126 LAALLVELERLD 137


>Q02JC6.1 Q02JC6_PSEAB Putative transcriptional regulator, MarR family
          Length = 149

 Score =  104 bits (260), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 77/132 (58%)

Query: 19  CTCINLRRSSMAVTALYDRYLTPSGLNISQFSLLKHLTVLGPVSVSELALEMRLDRTTIV 78
           C C  LRR++ +V+  YD  L  +GL ++QFSLL+HL  L   S+SELA  M LDR+T+ 
Sbjct: 18  CLCTKLRRAARSVSRFYDEALADTGLKVAQFSLLRHLQRLDRPSISELAEAMGLDRSTLG 77

Query: 79  RNLKALEQCGYVQDTSVAGSRNRCLTLTESGRAAYNDAAELWEEAQRFLQASLGEEDLQM 138
           RNL+ LE  G ++ T     RNR + LT +G  A       WE+AQR L   LGEE    
Sbjct: 78  RNLRVLEGDGLLRLTGGEDQRNRLVELTPAGLDALERGTPAWEDAQRRLAGRLGEERSGA 137

Query: 139 LTTLLFKIENLS 150
           L  LL ++E L 
Sbjct: 138 LAALLVELERLD 149


>B1M670.1 B1M670_METRJ Transcriptional regulator, MarR family
          Length = 138

 Score =  103 bits (257), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 56/119 (47%), Positives = 74/119 (62%), Gaps = 1/119 (0%)

Query: 14  PAVSACTCINLRRSSMAVTALYDRYLTPSGLNISQFSLLKHLTVLGPVSVSELALEMRLD 73
           P+   CTC  LRR++ A+TA YD  L P+GL ++QF++L+HL  LGPV VS LA E  L+
Sbjct: 4   PSPEPCTCSALRRATRALTASYDAALKPTGLRVTQFAILRHLDRLGPVPVSRLAAEAALE 63

Query: 74  RTTIVRNLKALEQCGYVQDT-SVAGSRNRCLTLTESGRAAYNDAAELWEEAQRFLQASL 131
           RTT+ RNL  L++ G V  T   A  R R ++LT SGR A   A   W EAQ  + A +
Sbjct: 64  RTTMGRNLDPLKRRGLVAITPGAADPRERRVSLTASGREALAAATPYWREAQSRINARV 122


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 740,788,110
Number of extensions: 23469572
Number of successful extensions: 73191
Number of sequences better than 1.0e-05: 261
Number of HSP's gapped: 73672
Number of HSP's successfully gapped: 261
Length of query: 150
Length of database: 3,060,696,203
Length adjustment: 112
Effective length of query: 38
Effective length of database: 2,005,542,523
Effective search space: 76210615874
Effective search space used: 76210615874
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)