BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0487.0003.p (387 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9T2.1 B3K9T2_9BACI Monosaccharide-transporting ATPase EC=3.6.... 445 e-123 B1DAE0.1 B1DAE0_9BACL Inner-membrane translocator 440 e-122 B4BMB0.1 B4BMB0_9BACI Monosaccharide-transporting ATPase EC=3.6.... 429 e-118 Q5KYP3.1 Q5KYP3_GEOKA L-arabinose ABC transporter (Permease) 429 e-118 A4IPA5.1 A4IPA5_GEOTN L-arabinose membrane permease 428 e-118 >B3K9T2.1 B3K9T2_9BACI Monosaccharide-transporting ATPase EC=3.6.3.17 Length = 388 Score = 445 bits (1144), Expect = e-123, Method: Compositional matrix adjust. Identities = 240/387 (62%), Positives = 279/387 (72%), Gaps = 1/387 (0%) Query: 1 MGAISEIFKKNIRQYGMIIALIFISVFFQILTDGILLKPLNVTNLILQNSYILVLAIGMV 60 M + ++FK NIRQYGMIIAL+ I +FFQI+T G+LL+P+N+TNLILQNSYILVLAIGMV Sbjct: 1 METLKKMFKNNIRQYGMIIALVVIMIFFQIITGGLLLEPINITNLILQNSYILVLAIGMV 60 Query: 61 LVIITGHIDLSVGSVAAFIGALSAIMMVDMQMNPVLAVILSLLMGALVGAWQGFWVAYIK 120 LVIITGHIDLSVGSVAAF+GA++AIMMVDMQ++PV+AVI+SL++G L+GAWQGFWVAY++ Sbjct: 61 LVIITGHIDLSVGSVAAFVGAVAAIMMVDMQLHPVIAVIVSLIVGGLIGAWQGFWVAYVR 120 Query: 121 IPAFIVTLAGMLLFRGLTMIVLNGQSIAPFPKSFQKISSGFIPDLSGGSSLNXXXXXXXX 180 IPAFIVTLAGMLLFRGLTMIVL GQSIAPFP FQK+SSGFIPD G + N Sbjct: 121 IPAFIVTLAGMLLFRGLTMIVLEGQSIAPFPGGFQKLSSGFIPDF-GNTGTNLIAILAGI 179 Query: 181 XXXXXXXYQEFRNRKISVKYGFEQSSVWLSVAKAAALVIVINLFTMVLAQYNGIPNXXXX 240 E R RK KY F+ L + K + VIN FT +LA Y G+PN Sbjct: 180 IFTVIFLINELRERKAHKKYNFDVLPSGLFLLKLVLIAAVINAFTFMLASYAGLPNILIL 239 Query: 241 XXXXXXXYSFVMNHMTMGRHIYALGGNEKAASLSGVKTKRVTFWVFVNMGVLAALSGLVF 300 YSFVMN MGRHIYALGGNEKAA+LSGVKTK+VTFWVFVNMGV+AA+SGL+F Sbjct: 240 LLVLIIIYSFVMNKTVMGRHIYALGGNEKAAALSGVKTKKVTFWVFVNMGVMAAISGLIF 299 Query: 301 AARLNSATPKAGTNFELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLVGLG 360 AARLN+ATP+AGTNFELD SLVGLG Sbjct: 300 AARLNAATPRAGTNFELDAIAASFIGGASATGGIGTVFGAIIGGLVMGVLNNGMSLVGLG 359 Query: 361 VDWQQGIKGLVLLLAVGFDIYNKSKTA 387 +DWQQGIKGLVLL AV FDIYNK K++ Sbjct: 360 IDWQQGIKGLVLLAAVAFDIYNKKKSS 386 >B1DAE0.1 B1DAE0_9BACL Inner-membrane translocator Length = 387 Score = 440 bits (1132), Expect = e-122, Method: Compositional matrix adjust. Identities = 226/382 (59%), Positives = 275/382 (71%) Query: 6 EIFKKNIRQYGMIIALIFISVFFQILTDGILLKPLNVTNLILQNSYILVLAIGMVLVIIT 65 ++ + NIRQYGM IALI I + FQ L+DGILLKPLN+TNLILQNSYIL+LAIGM+LVIIT Sbjct: 6 KLIRSNIRQYGMFIALILIMLLFQFLSDGILLKPLNITNLILQNSYILILAIGMLLVIIT 65 Query: 66 GHIDLSVGSVAAFIGALSAIMMVDMQMNPVLAVILSLLMGALVGAWQGFWVAYIKIPAFI 125 GHIDLSVGSVAAF+GA+SAIMMV M+ +A++LSL+ GA+VGAWQGFWVAY++IP+FI Sbjct: 66 GHIDLSVGSVAAFVGAVSAIMMVKHGMSFPVAMVLSLVFGAIVGAWQGFWVAYVRIPSFI 125 Query: 126 VTLAGMLLFRGLTMIVLNGQSIAPFPKSFQKISSGFIPDLSGGSSLNXXXXXXXXXXXXX 185 VTLAGMLLFRGLTM+VL+G+S+APFP+ F+ IS+GF+PD+ G ++ Sbjct: 126 VTLAGMLLFRGLTMLVLDGKSVAPFPQGFRSISTGFLPDIPGNWDIHLLTVLIGIILSVL 185 Query: 186 XXYQEFRNRKISVKYGFEQSSVWLSVAKAAALVIVINLFTMVLAQYNGIPNXXXXXXXXX 245 + E+R R + +Y E + + K AA+VI+ NLFT VLA Y G+PN Sbjct: 186 YIFMEWRGRLVQKRYKLELLPIPFFLIKLAAIVIITNLFTYVLASYKGLPNILIMLFVLI 245 Query: 246 XXYSFVMNHMTMGRHIYALGGNEKAASLSGVKTKRVTFWVFVNMGVLAALSGLVFAARLN 305 Y+FVM MGRHIYALGGNEKAA LSGVKTK++TFWVFVNMGVLAAL+GLVFAARLN Sbjct: 246 ALYTFVMRKTVMGRHIYALGGNEKAARLSGVKTKKMTFWVFVNMGVLAALAGLVFAARLN 305 Query: 306 SATPKAGTNFELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLVGLGVDWQQ 365 +ATPKAG NFELD SLVGLG+D+QQ Sbjct: 306 AATPKAGVNFELDAIAAVFIGGASATGGVGTVIGAIVGGLVMGVMNNGMSLVGLGIDYQQ 365 Query: 366 GIKGLVLLLAVGFDIYNKSKTA 387 GIKGLVLLLAV FD+YNK+K+A Sbjct: 366 GIKGLVLLLAVAFDLYNKNKSA 387 >B4BMB0.1 B4BMB0_9BACI Monosaccharide-transporting ATPase EC=3.6.3.17 Length = 407 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 223/383 (58%), Positives = 264/383 (68%) Query: 5 SEIFKKNIRQYGMIIALIFISVFFQILTDGILLKPLNVTNLILQNSYILVLAIGMVLVII 64 ++ K N+R Y M+IAL+ I + FQ+LT GILL+PLN+TNLILQNSYILVLA+GM+LVII Sbjct: 25 KQMIKSNMRSYSMVIALVLIMLLFQLLTGGILLRPLNITNLILQNSYILVLAVGMMLVII 84 Query: 65 TGHIDLSVGSVAAFIGALSAIMMVDMQMNPVLAVILSLLMGALVGAWQGFWVAYIKIPAF 124 TGHIDLSVGSVAAF+GAL+ I+MV + + V++ L++GAL+GAWQGFWVAY+KIPAF Sbjct: 85 TGHIDLSVGSVAAFVGALAGILMVQHHVPVWMTVLICLVLGALIGAWQGFWVAYVKIPAF 144 Query: 125 IVTLAGMLLFRGLTMIVLNGQSIAPFPKSFQKISSGFIPDLSGGSSLNXXXXXXXXXXXX 184 IVTLAGMLLFRGLTM++L GQSIAPFPK+FQ ISSGF+PDL G SL+ Sbjct: 145 IVTLAGMLLFRGLTMVILEGQSIAPFPKTFQNISSGFLPDLFNGGSLHLFTLVVGLAISV 204 Query: 185 XXXYQEFRNRKISVKYGFEQSSVWLSVAKAAALVIVINLFTMVLAQYNGIPNXXXXXXXX 244 E+R R KYGF S + K A +V VI +F+ +LA Y GIP Sbjct: 205 LFIALEWRKRNSQKKYGFAVSPAPVFGIKMAVIVAVIMIFSYILATYEGIPTILVILATL 264 Query: 245 XXXYSFVMNHMTMGRHIYALGGNEKAASLSGVKTKRVTFWVFVNMGVLAALSGLVFAARL 304 YSFV N +GRHIYA+GGNEKAA LSG+KTKRVTFWVFVNMGVLAALSGL+FAARL Sbjct: 265 IIAYSFVANRTVVGRHIYAIGGNEKAAQLSGIKTKRVTFWVFVNMGVLAALSGLIFAARL 324 Query: 305 NSATPKAGTNFELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLVGLGVDWQ 364 N+ATPKAG FELD SL+GLG+DWQ Sbjct: 325 NAATPKAGNLFELDAIAACFIGGASAYGGVGTIGGAIIGGLVMGVMNNGMSLLGLGIDWQ 384 Query: 365 QGIKGLVLLLAVGFDIYNKSKTA 387 Q IKGLVLL AV FDIYNK+K A Sbjct: 385 QAIKGLVLLAAVAFDIYNKNKAA 407 >Q5KYP3.1 Q5KYP3_GEOKA L-arabinose ABC transporter (Permease) Length = 407 Score = 429 bits (1102), Expect = e-118, Method: Compositional matrix adjust. Identities = 220/385 (57%), Positives = 266/385 (69%) Query: 3 AISEIFKKNIRQYGMIIALIFISVFFQILTDGILLKPLNVTNLILQNSYILVLAIGMVLV 62 ++ ++ K N+R Y M+IALI I + FQ+LT GILL+PLN+TNLILQNSYILVLA+GM+LV Sbjct: 23 SLKQMIKNNMRSYSMVIALILIMLLFQVLTGGILLRPLNITNLILQNSYILVLAVGMMLV 82 Query: 63 IITGHIDLSVGSVAAFIGALSAIMMVDMQMNPVLAVILSLLMGALVGAWQGFWVAYIKIP 122 IITGHIDLSVGSVAAF+GAL+ I+MV ++ L V++ LL+GAL+GAWQGFWVAY+KIP Sbjct: 83 IITGHIDLSVGSVAAFVGALAGILMVQHHVSVWLTVLICLLLGALIGAWQGFWVAYVKIP 142 Query: 123 AFIVTLAGMLLFRGLTMIVLNGQSIAPFPKSFQKISSGFIPDLSGGSSLNXXXXXXXXXX 182 +FIVTLAGMLLFRGLTM++L GQSIAPFPK+FQ +SSGF+PD+ G ++ Sbjct: 143 SFIVTLAGMLLFRGLTMVILEGQSIAPFPKTFQNMSSGFLPDVFHGGEIHLFTIVIGFAA 202 Query: 183 XXXXXYQEFRNRKISVKYGFEQSSVWLSVAKAAALVIVINLFTMVLAQYNGIPNXXXXXX 242 E+R R KYGF + + K A + VI +FT +LA Y GIP Sbjct: 203 SLLFVVLEWRKRNSQKKYGFAVTPASMFTLKLAVIAAVIMIFTYILATYEGIPTILVILA 262 Query: 243 XXXXXYSFVMNHMTMGRHIYALGGNEKAASLSGVKTKRVTFWVFVNMGVLAALSGLVFAA 302 YSFV N +GRHIYA+GGNEKAA LSG+KTKRVTFWVFVNMGVLAALSGL+FAA Sbjct: 263 ALIIAYSFVANRTVVGRHIYAIGGNEKAAQLSGIKTKRVTFWVFVNMGVLAALSGLIFAA 322 Query: 303 RLNSATPKAGTNFELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLVGLGVD 362 RLN+ATPKAG FELD SL+GLG+D Sbjct: 323 RLNAATPKAGNLFELDAIAACFIGGASAYGGIGTISGAIIGGLVMGVMNNGMSLLGLGID 382 Query: 363 WQQGIKGLVLLLAVGFDIYNKSKTA 387 WQQ IKGLVLL+AV FDIYNK+K A Sbjct: 383 WQQAIKGLVLLIAVAFDIYNKNKAA 407 >A4IPA5.1 A4IPA5_GEOTN L-arabinose membrane permease Length = 407 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 223/383 (58%), Positives = 264/383 (68%) Query: 5 SEIFKKNIRQYGMIIALIFISVFFQILTDGILLKPLNVTNLILQNSYILVLAIGMVLVII 64 ++ K N+R Y M+IAL+ I + FQ+LT GILL+PLN+TNLILQNSYILVLA+GM+LVII Sbjct: 25 KQMIKSNMRSYSMVIALVLIMLLFQLLTGGILLRPLNITNLILQNSYILVLAVGMMLVII 84 Query: 65 TGHIDLSVGSVAAFIGALSAIMMVDMQMNPVLAVILSLLMGALVGAWQGFWVAYIKIPAF 124 TGHIDLSVGSVAAF+GAL+ I+MV + + V++ L++GAL+GAWQGFWVAY+KIPAF Sbjct: 85 TGHIDLSVGSVAAFVGALAGILMVQHHVPVWMTVLICLVLGALIGAWQGFWVAYVKIPAF 144 Query: 125 IVTLAGMLLFRGLTMIVLNGQSIAPFPKSFQKISSGFIPDLSGGSSLNXXXXXXXXXXXX 184 IVTLAGMLLFRGLTM++L GQSIAPFPK+FQ ISSGF+PDL G SL+ Sbjct: 145 IVTLAGMLLFRGLTMVILEGQSIAPFPKTFQNISSGFLPDLFNGGSLHLFTLVVGLAISV 204 Query: 185 XXXYQEFRNRKISVKYGFEQSSVWLSVAKAAALVIVINLFTMVLAQYNGIPNXXXXXXXX 244 E+R R KYGF S + K A +V VI +F+ +LA Y GIP Sbjct: 205 LFIALEWRKRNGQKKYGFAVSPAPVFGIKMAVIVAVIMIFSYILATYEGIPTILVILAAL 264 Query: 245 XXXYSFVMNHMTMGRHIYALGGNEKAASLSGVKTKRVTFWVFVNMGVLAALSGLVFAARL 304 YSFV N +GRHIYA+GGNEKAA LSG+KTKRVTFWVFVNMGVLAALSGL+FAARL Sbjct: 265 IIAYSFVANRTVVGRHIYAIGGNEKAAQLSGIKTKRVTFWVFVNMGVLAALSGLIFAARL 324 Query: 305 NSATPKAGTNFELDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLVGLGVDWQ 364 N+ATPKAG FELD SL+GLG+DWQ Sbjct: 325 NAATPKAGNLFELDAIAACFIGGASAYGGVGTIGGAIIGGLVMGVMNNGMSLLGLGIDWQ 384 Query: 365 QGIKGLVLLLAVGFDIYNKSKTA 387 Q IKGLVLL AV FDIYNK+K A Sbjct: 385 QAIKGLVLLAAVAFDIYNKNKAA 407 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.140 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,709,390,181 Number of extensions: 56042819 Number of successful extensions: 268822 Number of sequences better than 1.0e-05: 3851 Number of HSP's gapped: 264478 Number of HSP's successfully gapped: 5516 Length of query: 387 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 249 Effective length of database: 1,760,596,133 Effective search space: 438388437117 Effective search space used: 438388437117 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)