BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0487.0002.p (509 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DAD9.1 B1DAD9_9BACL ABC transporter related 768 0.0 B3K9T1.1 B3K9T1_9BACI ABC transporter related 763 0.0 B4BMA9.1 B4BMA9_9BACI ABC transporter-related protein 744 0.0 Q5KYP2.1 Q5KYP2_GEOKA ABC transporter (ATP-binding protein) 744 0.0 A4IPA6.1 A4IPA6_GEOTN L-arabinose transport, ATP binding protein 742 0.0 >B1DAD9.1 B1DAD9_9BACL ABC transporter related Length = 509 Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/508 (72%), Positives = 436/508 (85%) Query: 1 MSEIILEMKGITKTFPGVKALSDVNLQVKAGEIHALCGENGAGKSTLMKVLSGVYPHGTY 60 M++I+LEM+GITKTFPGVKAL +VNL+VK GEIHAL GENGAGKSTLMKVLSGVYP G+Y Sbjct: 1 MTDILLEMRGITKTFPGVKALENVNLKVKEGEIHALMGENGAGKSTLMKVLSGVYPFGSY 60 Query: 61 EGDILFQGQVCQFKDIKDSESLGIVIIHQELALIPYLSISENIFLGNERARHGVINWNET 120 EGDILF+G+ C+FKDI SE LGIVIIHQELALIP LS++ENIFLGNE+A G+INWNET Sbjct: 61 EGDILFKGKACEFKDIGSSEQLGIVIIHQELALIPQLSVAENIFLGNEQASRGIINWNET 120 Query: 121 TVKTKELLQTVGLSESPFTQVSAIGVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSE 180 VKT+ELL+TVGLSESP T +GVGKQQLVEIAKALSKEVKLLILDEPTAALNE+DSE Sbjct: 121 VVKTRELLKTVGLSESPNTLAGTMGVGKQQLVEIAKALSKEVKLLILDEPTAALNEEDSE 180 Query: 181 NLLRLILELKQRGIASIIISHKLNEIEKVADSVTILRDGQTIRTLDMKQDEVTEDVIIKG 240 NLL L+L K++G+ SIIISHKLNEI KVADS+TILRDGQTI TL +++D++TED IIKG Sbjct: 181 NLLNLMLAFKEQGLTSIIISHKLNEIMKVADSITILRDGQTIETLRVREDQITEDRIIKG 240 Query: 241 MVGRDLTNRYPERTPNLGETIFEIRDWEVYHPTQADRKVLDNINLHIRRGEVVGIAGLMG 300 MVGRDLT+RYPER PN+G+ +FE++DW VYHP Q+DRKV+D ++ HI RGE+VGIAGLMG Sbjct: 241 MVGRDLTHRYPEREPNIGDILFEVKDWNVYHPQQSDRKVIDEVSFHINRGEIVGIAGLMG 300 Query: 301 AGRTELAMSVFGKSYGRRISGQLYMHGTEVHLNDINKAIDSGLAYVTEDRKHYGLILIDD 360 AGRTELAMS+FG+SYG++ISGQL+ G E+ L DI+KAID G+AYVTEDRK YGLIL+DD Sbjct: 301 AGRTELAMSIFGQSYGKKISGQLFKDGREIRLPDISKAIDEGIAYVTEDRKEYGLILMDD 360 Query: 361 XXXXXXXXXXXXXXXXGVINENEEVLVAEEYRRKLNIKTPSILQKTVNLSGGNQQKVVLS 420 V+++ +E+ AE +R+KLNIKTPS+ QKT NLSGGNQQKVVLS Sbjct: 361 IKRNTTLANLWGISKWFVVDDYKEITEAEGFRKKLNIKTPSVHQKTGNLSGGNQQKVVLS 420 Query: 421 KWIYAQPDILILDEPTRGIDVGAKYEIYSIINGLAAEGKGVLVISSELPEIIGMCDRIYT 480 KWI+ PD+LILDEPTRGIDVGAKYEIY+IIN LA +GKG+L+ISSELPE++GMCDRIY Sbjct: 421 KWIFTGPDLLILDEPTRGIDVGAKYEIYTIINQLAEQGKGILMISSELPELLGMCDRIYV 480 Query: 481 MCEGRISGEVERQDASQELLMKYMTRSR 508 M EGR +GEV R +ASQE LMKYMT+SR Sbjct: 481 MNEGRFTGEVPRAEASQETLMKYMTKSR 508 >B3K9T1.1 B3K9T1_9BACI ABC transporter related Length = 510 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/509 (72%), Positives = 431/509 (84%) Query: 1 MSEIILEMKGITKTFPGVKALSDVNLQVKAGEIHALCGENGAGKSTLMKVLSGVYPHGTY 60 MSE ILEM+ ITK FPGVKAL VNL+V+ GEIH+LCGENGAGKSTLMKVLSGVYP+G+Y Sbjct: 1 MSEYILEMRNITKAFPGVKALDQVNLKVREGEIHSLCGENGAGKSTLMKVLSGVYPYGSY 60 Query: 61 EGDILFQGQVCQFKDIKDSESLGIVIIHQELALIPYLSISENIFLGNERARHGVINWNET 120 EGDILF+G VC+FK+IK SE LGIVIIHQELALIPYLSI+ENI+LGNERA G++NWNET Sbjct: 61 EGDILFKGSVCEFKNIKQSEDLGIVIIHQELALIPYLSIAENIYLGNERAEKGIMNWNET 120 Query: 121 TVKTKELLQTVGLSESPFTQVSAIGVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSE 180 KELL VGLSE+P TQV +IGVGKQQLVEIAKALSK+VKLLILDEPTAALNEDDSE Sbjct: 121 MTGAKELLDKVGLSENPNTQVGSIGVGKQQLVEIAKALSKKVKLLILDEPTAALNEDDSE 180 Query: 181 NLLRLILELKQRGIASIIISHKLNEIEKVADSVTILRDGQTIRTLDMKQDEVTEDVIIKG 240 NLL L+LE K++GI+ I+ISHKLNE+ KV+DS+TILRDGQTI TLDM+ EV ED II+G Sbjct: 181 NLLALMLEFKKQGISCILISHKLNEVSKVSDSITILRDGQTIETLDMRGGEVNEDRIIRG 240 Query: 241 MVGRDLTNRYPERTPNLGETIFEIRDWEVYHPTQADRKVLDNINLHIRRGEVVGIAGLMG 300 MVGRDLTNRYPERTP +GE I E++DW VYH QA RKV+DN++++IRRGEVVGIAGLMG Sbjct: 241 MVGRDLTNRYPERTPKIGEVILEVKDWTVYHELQAGRKVIDNVSMNIRRGEVVGIAGLMG 300 Query: 301 AGRTELAMSVFGKSYGRRISGQLYMHGTEVHLNDINKAIDSGLAYVTEDRKHYGLILIDD 360 +GRTELAMS+FG++YGR I+G L G E+ IN+AI++G AYVTEDRK YGLIL+DD Sbjct: 301 SGRTELAMSIFGRAYGRNITGTLRKDGKEIRNQSINEAIENGFAYVTEDRKEYGLILMDD 360 Query: 361 XXXXXXXXXXXXXXXXGVINENEEVLVAEEYRRKLNIKTPSILQKTVNLSGGNQQKVVLS 420 VI++ EE+LVAE+ R+KL IKTP+ILQKT NLSGGNQQKVVLS Sbjct: 361 IKRNISLTGLSKLAKNMVIDDREEILVAEDMRKKLKIKTPNILQKTGNLSGGNQQKVVLS 420 Query: 421 KWIYAQPDILILDEPTRGIDVGAKYEIYSIINGLAAEGKGVLVISSELPEIIGMCDRIYT 480 KWIYA+PDILILDEPTRGIDVGAKYEIY+IIN LA EGK VLVISSELPEI+G+CDRIY Sbjct: 421 KWIYAEPDILILDEPTRGIDVGAKYEIYAIINQLADEGKAVLVISSELPEILGICDRIYV 480 Query: 481 MCEGRISGEVERQDASQELLMKYMTRSRG 509 M GR++GEV R+ ASQE LM+YMT++ G Sbjct: 481 MSAGRMTGEVGREQASQETLMRYMTKNGG 509 >B4BMA9.1 B4BMA9_9BACI ABC transporter-related protein Length = 513 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 363/507 (71%), Positives = 437/507 (86%) Query: 1 MSEIILEMKGITKTFPGVKALSDVNLQVKAGEIHALCGENGAGKSTLMKVLSGVYPHGTY 60 M ILEM+GITK FPGVKAL +VNL+V+ GEIHALCGENGAGKSTLMKVLSGVYPHGTY Sbjct: 1 MCAFILEMRGITKQFPGVKALDNVNLKVREGEIHALCGENGAGKSTLMKVLSGVYPHGTY 60 Query: 61 EGDILFQGQVCQFKDIKDSESLGIVIIHQELALIPYLSISENIFLGNERARHGVINWNET 120 +G+ILF+G+VC+FKDIK SE LGIVIIHQELALIPYLSI+ENIFLGNERA+ GVINWNET Sbjct: 61 DGEILFKGEVCKFKDIKQSEQLGIVIIHQELALIPYLSIAENIFLGNERAKKGVINWNET 120 Query: 121 TVKTKELLQTVGLSESPFTQVSAIGVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSE 180 +TKELLQ VGL ESP T V +GVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSE Sbjct: 121 FAQTKELLQKVGLDESPHTLVGQLGVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSE 180 Query: 181 NLLRLILELKQRGIASIIISHKLNEIEKVADSVTILRDGQTIRTLDMKQDEVTEDVIIKG 240 NLL L+LE K++G+++IIISHKLNEI KVADS+TILRDG+TI TLDMK+DEVTED II+G Sbjct: 181 NLLNLLLEFKKQGLSAIIISHKLNEIAKVADSITILRDGKTIETLDMKRDEVTEDRIIRG 240 Query: 241 MVGRDLTNRYPERTPNLGETIFEIRDWEVYHPTQADRKVLDNINLHIRRGEVVGIAGLMG 300 MVGRDLTNRYP RTP +GE IFE+++W V+HP +RKV+DN++L IRRGE+VGIAGLMG Sbjct: 241 MVGRDLTNRYPTRTPKIGEVIFEVKNWTVHHPVYPERKVIDNVHLSIRRGEIVGIAGLMG 300 Query: 301 AGRTELAMSVFGKSYGRRISGQLYMHGTEVHLNDINKAIDSGLAYVTEDRKHYGLILIDD 360 AGRTELAMS+FG+SYG++ISG+++ +G ++ ++D++KAI +G+AYVTEDRK GLIL++D Sbjct: 301 AGRTELAMSIFGRSYGKKISGEIWKNGAKIDVSDVSKAIANGIAYVTEDRKGNGLILMED 360 Query: 361 XXXXXXXXXXXXXXXXGVINENEEVLVAEEYRRKLNIKTPSILQKTVNLSGGNQQKVVLS 420 V++EN+E++ +E +R + IKTPS+ QK LSGGNQQKVVLS Sbjct: 361 IRKNITLSRLGKISNHFVVDENKEIIESERFRNQFKIKTPSVFQKAEALSGGNQQKVVLS 420 Query: 421 KWIYAQPDILILDEPTRGIDVGAKYEIYSIINGLAAEGKGVLVISSELPEIIGMCDRIYT 480 KWI+A+PDILILDEPTRGIDVGAKYEIY+II+ LA GKG+L+ISSELPEI+GMCDRIY Sbjct: 421 KWIFAEPDILILDEPTRGIDVGAKYEIYTIIHQLANAGKGILMISSELPEILGMCDRIYV 480 Query: 481 MCEGRISGEVERQDASQELLMKYMTRS 507 M EGRI+GEV R++A+QE LM+ MT++ Sbjct: 481 MSEGRITGEVVREEATQEKLMRLMTKT 507 >Q5KYP2.1 Q5KYP2_GEOKA ABC transporter (ATP-binding protein) Length = 513 Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/507 (71%), Positives = 439/507 (86%) Query: 1 MSEIILEMKGITKTFPGVKALSDVNLQVKAGEIHALCGENGAGKSTLMKVLSGVYPHGTY 60 MSE ILEM+GITK FPGVKAL +VNL+++ GEIHALCGENGAGKSTLMKVLSGVYP+GTY Sbjct: 1 MSEFILEMRGITKQFPGVKALDNVNLKIREGEIHALCGENGAGKSTLMKVLSGVYPYGTY 60 Query: 61 EGDILFQGQVCQFKDIKDSESLGIVIIHQELALIPYLSISENIFLGNERARHGVINWNET 120 +G+ILF+G+VC+FKDIK SE LGIVIIHQELALIPYLSI+ENIFLGNERA+ G+INWNET Sbjct: 61 DGEILFKGEVCRFKDIKQSEQLGIVIIHQELALIPYLSIAENIFLGNERAKRGIINWNET 120 Query: 121 TVKTKELLQTVGLSESPFTQVSAIGVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSE 180 +TK+LLQ VGL ESP T V +GVGKQQLVEIAKAL+K+VKLLILDEPTAALNEDDSE Sbjct: 121 IAQTKKLLQKVGLEESPHTLVGQLGVGKQQLVEIAKALAKDVKLLILDEPTAALNEDDSE 180 Query: 181 NLLRLILELKQRGIASIIISHKLNEIEKVADSVTILRDGQTIRTLDMKQDEVTEDVIIKG 240 NLL L+LELK++G+++IIISHKLNEI KVADS+TILRDG+TI TLDMK DEVTED II+G Sbjct: 181 NLLNLLLELKKQGLSAIIISHKLNEITKVADSITILRDGKTIETLDMKHDEVTEDRIIRG 240 Query: 241 MVGRDLTNRYPERTPNLGETIFEIRDWEVYHPTQADRKVLDNINLHIRRGEVVGIAGLMG 300 MVGRDLTNRYP RTP +GE IFE+R+W VYHP ++RKVLDNINL IRRGE+VGIAGLMG Sbjct: 241 MVGRDLTNRYPSRTPKIGEIIFEVRNWTVYHPVYSERKVLDNINLSIRRGEIVGIAGLMG 300 Query: 301 AGRTELAMSVFGKSYGRRISGQLYMHGTEVHLNDINKAIDSGLAYVTEDRKHYGLILIDD 360 AGRTELAMS+FG+SYG++ISG+++ +G ++ ++D++KAI +G+AYVTEDRK GLIL++D Sbjct: 301 AGRTELAMSIFGRSYGKKISGEIWKNGVKIDVSDVSKAIANGIAYVTEDRKGNGLILMED 360 Query: 361 XXXXXXXXXXXXXXXXGVINENEEVLVAEEYRRKLNIKTPSILQKTVNLSGGNQQKVVLS 420 V++EN+E++ +E +R + IKTPS+ QK LSGGNQQKVVLS Sbjct: 361 IRKNITLSRLGKISNHFVVDENQEIVESERFRDQFKIKTPSVFQKVEALSGGNQQKVVLS 420 Query: 421 KWIYAQPDILILDEPTRGIDVGAKYEIYSIINGLAAEGKGVLVISSELPEIIGMCDRIYT 480 KWI+A+PDILILDEPTRGIDVGAKYEIY+II LA GKG+L+ISSELPEI+GMCDRIY Sbjct: 421 KWIFAEPDILILDEPTRGIDVGAKYEIYTIIQQLADAGKGILMISSELPEILGMCDRIYV 480 Query: 481 MCEGRISGEVERQDASQELLMKYMTRS 507 M EGRI+GEV R++A+QE LM+ MT++ Sbjct: 481 MSEGRITGEVSREEATQEKLMRLMTKT 507 >A4IPA6.1 A4IPA6_GEOTN L-arabinose transport, ATP binding protein Length = 513 Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/507 (71%), Positives = 437/507 (86%) Query: 1 MSEIILEMKGITKTFPGVKALSDVNLQVKAGEIHALCGENGAGKSTLMKVLSGVYPHGTY 60 M ILEM+GITK FPGVKAL +VNL+V+ GEIHALCGENGAGKSTLMKVLSGVYP+GTY Sbjct: 1 MCAFILEMRGITKQFPGVKALDNVNLKVREGEIHALCGENGAGKSTLMKVLSGVYPYGTY 60 Query: 61 EGDILFQGQVCQFKDIKDSESLGIVIIHQELALIPYLSISENIFLGNERARHGVINWNET 120 +G+ILF+G+VC+FKDIK SE LGIVIIHQELALIPYLSI+ENIFLGNERA+ GVINWNET Sbjct: 61 DGEILFKGEVCKFKDIKQSEQLGIVIIHQELALIPYLSIAENIFLGNERAKKGVINWNET 120 Query: 121 TVKTKELLQTVGLSESPFTQVSAIGVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSE 180 +TKELLQ VGL ESP T V +GVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSE Sbjct: 121 FAQTKELLQKVGLDESPHTLVGQLGVGKQQLVEIAKALSKEVKLLILDEPTAALNEDDSE 180 Query: 181 NLLRLILELKQRGIASIIISHKLNEIEKVADSVTILRDGQTIRTLDMKQDEVTEDVIIKG 240 NLL L+LE K++G+++IIISHKLNEI KVADS+TILRDG+TI TLDMK+DEVTED II+G Sbjct: 181 NLLNLLLEFKKQGLSAIIISHKLNEIAKVADSITILRDGKTIETLDMKRDEVTEDRIIRG 240 Query: 241 MVGRDLTNRYPERTPNLGETIFEIRDWEVYHPTQADRKVLDNINLHIRRGEVVGIAGLMG 300 MVGRDLTNRYP RTP +GE IFE+++W V+HP +RKV+DN++L IRRGE+VGIAGLMG Sbjct: 241 MVGRDLTNRYPTRTPKIGEVIFEVKNWTVHHPVYPERKVIDNVHLSIRRGEIVGIAGLMG 300 Query: 301 AGRTELAMSVFGKSYGRRISGQLYMHGTEVHLNDINKAIDSGLAYVTEDRKHYGLILIDD 360 AGRTELAMS+FG+SYG++ISG+++ +G ++ ++D++KAI +G+AYVTEDRK GLIL++D Sbjct: 301 AGRTELAMSIFGRSYGKKISGEIWKNGAKIDVSDVSKAIANGIAYVTEDRKGNGLILMED 360 Query: 361 XXXXXXXXXXXXXXXXGVINENEEVLVAEEYRRKLNIKTPSILQKTVNLSGGNQQKVVLS 420 V++EN+E++ +E +R + IKTPS+ QK LSGGNQQKVVLS Sbjct: 361 IRKNITLSRLGKISNHFVVDENKEIIESERFRNQFKIKTPSVFQKAEALSGGNQQKVVLS 420 Query: 421 KWIYAQPDILILDEPTRGIDVGAKYEIYSIINGLAAEGKGVLVISSELPEIIGMCDRIYT 480 KWI+A+PDILILDEPTRGIDVGAKYEIY+II+ LA GKG+L+ISSELPEI+GMCDRIY Sbjct: 421 KWIFAEPDILILDEPTRGIDVGAKYEIYTIIHQLANAGKGILMISSELPEILGMCDRIYV 480 Query: 481 MCEGRISGEVERQDASQELLMKYMTRS 507 M EGRI+GEV R++A+QE LM+ MT++ Sbjct: 481 MSEGRITGEVVREEATQEKLMRLMTKT 507 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.137 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,820,084,987 Number of extensions: 117855751 Number of successful extensions: 863935 Number of sequences better than 1.0e-05: 84003 Number of HSP's gapped: 757403 Number of HSP's successfully gapped: 101056 Length of query: 509 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 369 Effective length of database: 1,741,754,103 Effective search space: 642707264007 Effective search space used: 642707264007 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)