BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0487.0001.p (365 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q5KYP1.1 Q5KYP1_GEOKA ABC transporter (Substrate-binding protein) 552 e-155 B3EYL8.1 B3EYL8_BACST Sugar binding protein 551 e-155 A4IPA7.1 A4IPA7_GEOTN Multiple sugar transport system (Multiples... 544 e-153 B4BMA8.1 B4BMA8_9BACI Monosaccharide-transporting ATPase EC=3.6.... 544 e-153 B3K9T0.1 B3K9T0_9BACI Monosaccharide-transporting ATPase EC=3.6.... 542 e-152 >Q5KYP1.1 Q5KYP1_GEOKA ABC transporter (Substrate-binding protein) Length = 359 Score = 552 bits (1422), Expect = e-155, Method: Compositional matrix adjust. Identities = 272/362 (75%), Positives = 303/362 (83%), Gaps = 5/362 (1%) Query: 2 MKKYSWIMLALVLVLILSACXXXXXXXXXXXXXXXXXKVGIAMPTKSSERWVNDGNNMVK 61 MK+ ++ LV VL LSAC VGI+MPTKSSERW+ DG NMVK Sbjct: 1 MKRLLSVLTLLVFVLSLSACGGLGANGGKDAGF-----VGISMPTKSSERWIRDGENMVK 55 Query: 62 EFEKLGYGTDLQYAEDVVENQVSQIENMITKGVKAIVIASIDGEALTDVLQKAHDADVKV 121 EF+KLGY TDLQYAEDVVENQVSQIENMITKGV +VIA ID EALTDVL+KAH +K+ Sbjct: 56 EFKKLGYKTDLQYAEDVVENQVSQIENMITKGVNVLVIAPIDAEALTDVLEKAHKQGIKI 115 Query: 122 IAYDRLIKKSEYVDYYATFDNFKVGVLQGSYIEEKLGLKEGKGPFNIELFGGSPDDNNAY 181 I+YDRLIK S+YVDYYATFDNFKVGVLQG YIE+KLGLKEGKGPFNIELF GSPDDNNAY Sbjct: 116 ISYDRLIKNSKYVDYYATFDNFKVGVLQGQYIEQKLGLKEGKGPFNIELFAGSPDDNNAY 175 Query: 182 FFFDGAMSILKPYIDSGKLVVRSKQTTMDQVATLRWDGAAAQARMDNLLSANYASDNLDA 241 FFFDGAMS+LKPYIDSGKLVVRS QT DQVATLRWDGA AQARMDNLLSA+Y + +DA Sbjct: 176 FFFDGAMSVLKPYIDSGKLVVRSGQTKFDQVATLRWDGATAQARMDNLLSAHYTNARVDA 235 Query: 242 VLSPYDGISIGILSSLKGVGYGAGDKKLPVVTGQDAELASIKSILAGEQTQTVFKDTRQL 301 VLSPYDGISIGI+SSLKGVGYG K +PV+TGQDAELAS+KSI+AGEQTQTVFKDTR+L Sbjct: 236 VLSPYDGISIGIISSLKGVGYGTPSKPMPVITGQDAELASVKSIIAGEQTQTVFKDTREL 295 Query: 302 AKKAVEMTESVLKGTEAEVNDTTTYDNGVKIVPSYLLEPVSVDAGNVDKVLVDGGYYTKE 361 AKKAVEM ++VLKG + EVNDT TY+NGVK+VP+YLLEPVSVD N +KVL+D GYY KE Sbjct: 296 AKKAVEMVDAVLKGKKPEVNDTKTYNNGVKVVPAYLLEPVSVDKSNYEKVLIDSGYYKKE 355 Query: 362 QL 363 L Sbjct: 356 DL 357 >B3EYL8.1 B3EYL8_BACST Sugar binding protein Length = 362 Score = 551 bits (1419), Expect = e-155, Method: Compositional matrix adjust. Identities = 269/362 (74%), Positives = 304/362 (83%), Gaps = 5/362 (1%) Query: 2 MKKYSWIMLALVLVLILSACXXXXXXXXXXXXXXXXXKVGIAMPTKSSERWVNDGNNMVK 61 MK+ +++ LV VL LSAC VGI+MPTKSSERW++DG NMVK Sbjct: 1 MKRLLYVLTLLVFVLSLSACGGLGASGGKDAGF-----VGISMPTKSSERWIHDGQNMVK 55 Query: 62 EFEKLGYGTDLQYAEDVVENQVSQIENMITKGVKAIVIASIDGEALTDVLQKAHDADVKV 121 EF+KLGY TDLQYAEDVVENQVSQIENMITKGV +VIA ID EALTDVL+KAH +K+ Sbjct: 56 EFKKLGYKTDLQYAEDVVENQVSQIENMITKGVNVLVIAPIDAEALTDVLEKAHKQGIKI 115 Query: 122 IAYDRLIKKSEYVDYYATFDNFKVGVLQGSYIEEKLGLKEGKGPFNIELFGGSPDDNNAY 181 I+YDRLIK S+YVDYY TFDNFKVGVLQG YIE+KLGLKEGKGPFNIELF GSPDDNNAY Sbjct: 116 ISYDRLIKNSKYVDYYTTFDNFKVGVLQGQYIEQKLGLKEGKGPFNIELFAGSPDDNNAY 175 Query: 182 FFFDGAMSILKPYIDSGKLVVRSKQTTMDQVATLRWDGAAAQARMDNLLSANYASDNLDA 241 FFFDGAMS+LKPYIDSGKLVVRS QT DQVATLRWDGA AQARMDNLLSA+Y + +DA Sbjct: 176 FFFDGAMSVLKPYIDSGKLVVRSGQTKFDQVATLRWDGATAQARMDNLLSAHYTNARVDA 235 Query: 242 VLSPYDGISIGILSSLKGVGYGAGDKKLPVVTGQDAELASIKSILAGEQTQTVFKDTRQL 301 VLSPYDGISIGI+SSLKGVGYG K +PV+TGQDAELAS+KSI+AGEQTQTVFKDTR+L Sbjct: 236 VLSPYDGISIGIISSLKGVGYGTPSKPMPVITGQDAELASVKSIIAGEQTQTVFKDTREL 295 Query: 302 AKKAVEMTESVLKGTEAEVNDTTTYDNGVKIVPSYLLEPVSVDAGNVDKVLVDGGYYTKE 361 AKKAVEM ++VLKG + EVNDT TY+NGVK+VP+YLLEPVSVD N +KVL+D GYY K Sbjct: 296 AKKAVEMADAVLKGKKPEVNDTKTYNNGVKVVPAYLLEPVSVDKSNYEKVLIDSGYYKKA 355 Query: 362 QL 363 ++ Sbjct: 356 RV 357 >A4IPA7.1 A4IPA7_GEOTN Multiple sugar transport system (Multiplesugar-binding protein) Length = 358 Score = 544 bits (1401), Expect = e-153, Method: Compositional matrix adjust. Identities = 265/324 (81%), Positives = 289/324 (89%) Query: 40 VGIAMPTKSSERWVNDGNNMVKEFEKLGYGTDLQYAEDVVENQVSQIENMITKGVKAIVI 99 VGI+MPTKSSERWV DG +MVKEFEKLGY TDLQYAEDVVENQVSQIENMITKGV +VI Sbjct: 34 VGISMPTKSSERWVRDGESMVKEFEKLGYKTDLQYAEDVVENQVSQIENMITKGVNVLVI 93 Query: 100 ASIDGEALTDVLQKAHDADVKVIAYDRLIKKSEYVDYYATFDNFKVGVLQGSYIEEKLGL 159 A IDGEALTDVL+KA+ +KVI+YDRLIK S+YVDYYATFDNFKVGVLQG YIE+KLGL Sbjct: 94 APIDGEALTDVLEKANKQGIKVISYDRLIKNSKYVDYYATFDNFKVGVLQGQYIEQKLGL 153 Query: 160 KEGKGPFNIELFGGSPDDNNAYFFFDGAMSILKPYIDSGKLVVRSKQTTMDQVATLRWDG 219 KEGKGPFNIELF GSPDDNNAYFFFDGAMSILKPYIDSGKLVV+S QT DQVATLRWDG Sbjct: 154 KEGKGPFNIELFAGSPDDNNAYFFFDGAMSILKPYIDSGKLVVKSGQTKFDQVATLRWDG 213 Query: 220 AAAQARMDNLLSANYASDNLDAVLSPYDGISIGILSSLKGVGYGAGDKKLPVVTGQDAEL 279 A AQARMDNLLSA+Y +DAVLSPYDGISIG++SSLKGVGYG K +PV+TGQDAEL Sbjct: 214 ATAQARMDNLLSAHYTDARVDAVLSPYDGISIGVISSLKGVGYGTASKPMPVITGQDAEL 273 Query: 280 ASIKSILAGEQTQTVFKDTRQLAKKAVEMTESVLKGTEAEVNDTTTYDNGVKIVPSYLLE 339 ASIKSI+AGEQTQTVFKDTR+LAKKAVEM ++VLK + EVNDT TYDNGVK+VPSYLLE Sbjct: 274 ASIKSIIAGEQTQTVFKDTRELAKKAVEMADAVLKDKKPEVNDTKTYDNGVKVVPSYLLE 333 Query: 340 PVSVDAGNVDKVLVDGGYYTKEQL 363 P+SVD N +KVLVD GYY KE L Sbjct: 334 PISVDQSNYEKVLVDSGYYKKEDL 357 >B4BMA8.1 B4BMA8_9BACI Monosaccharide-transporting ATPase EC=3.6.3.17 Length = 358 Score = 544 bits (1401), Expect = e-153, Method: Compositional matrix adjust. Identities = 265/324 (81%), Positives = 289/324 (89%) Query: 40 VGIAMPTKSSERWVNDGNNMVKEFEKLGYGTDLQYAEDVVENQVSQIENMITKGVKAIVI 99 VGI+MPTKSSERWV DG +MVKEFEKLGY TDLQYAEDVVENQVSQIENMITKGV +VI Sbjct: 34 VGISMPTKSSERWVRDGESMVKEFEKLGYKTDLQYAEDVVENQVSQIENMITKGVNVLVI 93 Query: 100 ASIDGEALTDVLQKAHDADVKVIAYDRLIKKSEYVDYYATFDNFKVGVLQGSYIEEKLGL 159 A IDGEALTDVL+KA+ +KVI+YDRLIK S+YVDYYATFDNFKVGVLQG YIE+KLGL Sbjct: 94 APIDGEALTDVLEKANKQGIKVISYDRLIKNSKYVDYYATFDNFKVGVLQGQYIEQKLGL 153 Query: 160 KEGKGPFNIELFGGSPDDNNAYFFFDGAMSILKPYIDSGKLVVRSKQTTMDQVATLRWDG 219 KEGKGPFNIELF GSPDDNNAYFFFDGAMSILKPYIDSGKLVV+S QT DQVATLRWDG Sbjct: 154 KEGKGPFNIELFAGSPDDNNAYFFFDGAMSILKPYIDSGKLVVKSGQTKFDQVATLRWDG 213 Query: 220 AAAQARMDNLLSANYASDNLDAVLSPYDGISIGILSSLKGVGYGAGDKKLPVVTGQDAEL 279 A AQARMDNLLSA+Y +DAVLSPYDGISIG++SSLKGVGYG K +PV+TGQDAEL Sbjct: 214 ATAQARMDNLLSAHYTDARVDAVLSPYDGISIGVISSLKGVGYGTASKPMPVITGQDAEL 273 Query: 280 ASIKSILAGEQTQTVFKDTRQLAKKAVEMTESVLKGTEAEVNDTTTYDNGVKIVPSYLLE 339 ASIKSI+AGEQTQTVFKDTR+LAKKAVEM ++VLK + EVNDT TYDNGVK+VPSYLLE Sbjct: 274 ASIKSIIAGEQTQTVFKDTRELAKKAVEMADAVLKDKKPEVNDTKTYDNGVKVVPSYLLE 333 Query: 340 PVSVDAGNVDKVLVDGGYYTKEQL 363 P+SVD N +KVLVD GYY KE L Sbjct: 334 PISVDQSNYEKVLVDSGYYKKEDL 357 >B3K9T0.1 B3K9T0_9BACI Monosaccharide-transporting ATPase EC=3.6.3.17 Length = 475 Score = 542 bits (1397), Expect = e-152, Method: Compositional matrix adjust. Identities = 256/325 (78%), Positives = 296/325 (91%) Query: 40 VGIAMPTKSSERWVNDGNNMVKEFEKLGYGTDLQYAEDVVENQVSQIENMITKGVKAIVI 99 VG+AMPTKSSERWV DG NM + F++ GY TDLQ+AEDV+ENQ+SQIENMITKGV IVI Sbjct: 149 VGLAMPTKSSERWVADGKNMERLFQEKGYKTDLQFAEDVIENQISQIENMITKGVDVIVI 208 Query: 100 ASIDGEALTDVLQKAHDADVKVIAYDRLIKKSEYVDYYATFDNFKVGVLQGSYIEEKLGL 159 ASIDG LTDV++KAHD +KVIAYDRLI+ +E++ YYATFDNF+VGV Q SYIEEKLGL Sbjct: 209 ASIDGNTLTDVIKKAHDQGIKVIAYDRLIRNTEHLSYYATFDNFQVGVQQASYIEEKLGL 268 Query: 160 KEGKGPFNIELFGGSPDDNNAYFFFDGAMSILKPYIDSGKLVVRSKQTTMDQVATLRWDG 219 KEGKGPFNIELFGGSPDDNNAYFF+DGAMS+LKPY+DSGKLVVRSKQTTM Q+ATLRWDG Sbjct: 269 KEGKGPFNIELFGGSPDDNNAYFFYDGAMSVLKPYMDSGKLVVRSKQTTMAQIATLRWDG 328 Query: 220 AAAQARMDNLLSANYASDNLDAVLSPYDGISIGILSSLKGVGYGAGDKKLPVVTGQDAEL 279 A AQ+RMDNL+SANY+S+NLDAVLSPYDGISIGI+SSLKGVGYG K LP++TGQDAEL Sbjct: 329 ALAQSRMDNLISANYSSENLDAVLSPYDGISIGIISSLKGVGYGTAGKPLPIITGQDAEL 388 Query: 280 ASIKSILAGEQTQTVFKDTRQLAKKAVEMTESVLKGTEAEVNDTTTYDNGVKIVPSYLLE 339 ASIKSI+AGEQTQTVFKDTRQLA++AV+M ESVLKG EAEVNDT +YDNG+K+VP+YLL Sbjct: 389 ASIKSIVAGEQTQTVFKDTRQLAEQAVKMAESVLKGEEAEVNDTESYDNGIKVVPAYLLP 448 Query: 340 PVSVDAGNVDKVLVDGGYYTKEQLG 364 PVSVDA NV+K +V+ GYY+KE++G Sbjct: 449 PVSVDASNVEKEVVETGYYSKEEIG 473 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,031,248,693 Number of extensions: 83221143 Number of successful extensions: 188541 Number of sequences better than 1.0e-05: 1265 Number of HSP's gapped: 187372 Number of HSP's successfully gapped: 1267 Length of query: 365 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 228 Effective length of database: 1,770,017,148 Effective search space: 403563909744 Effective search space used: 403563909744 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)