BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0486.0011.p (359 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KCR0.1 B3KCR0_9BACI Periplasmic binding protein/LacI transcrip... 524 e-147 C0Z4D0.1 C0Z4D0_BREBN D-galactose ABC transporter substrate bind... 516 e-144 B1DIU1.1 B1DIU1_9BACL Periplasmic binding protein/LacI transcrip... 503 e-140 B1D852.1 B1D852_9BACL Periplasmic binding protein/LacI transcrip... 500 e-140 B7R6W8.1 B7R6W8_9THEO Putative uncharacterized protein 474 e-132 >B3KCR0.1 B3KCR0_9BACI Periplasmic binding protein/LacI transcriptional regulator Length = 350 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 251/310 (80%), Positives = 278/310 (89%) Query: 50 ETPKVGVAIYKFDDTFMTGVRNAIDTAAKGIATVDIVDSQNSQPTQNDKVDLFITKKYDG 109 TP+VGVAIYKFDDTFMTGVRNA+ AA G+A +DIVDSQN+QPTQN+K+DLFI+KKY Sbjct: 41 STPQVGVAIYKFDDTFMTGVRNAMSDAANGVAKLDIVDSQNAQPTQNEKIDLFISKKYSS 100 Query: 110 MLINPVDRTAAGVIIDKAKTADIPVVFLNREPLPEDMKKWDKVYYVGAKAEESGTMSGQL 169 M+INPVDRTAAGVIIDKAKTA+ PVVFLNREP+ EDM KWDKVYYVGAKAEESGT+SGQL Sbjct: 101 MIINPVDRTAAGVIIDKAKTANTPVVFLNREPIAEDMNKWDKVYYVGAKAEESGTISGQL 160 Query: 170 IVDYWKAHPEADKNKDGVLQYVMLKGEPGHQDAELRTTYSIQAIEDAGIKVEKLAEDTAM 229 IVDYWKA+P+ADKN DG LQYV+L+GEPGHQDAELRT +S+QAI+DAGI+VE LA DTAM Sbjct: 161 IVDYWKANPKADKNGDGKLQYVLLQGEPGHQDAELRTKFSVQAIQDAGIEVEALAVDTAM 220 Query: 230 WDRVKGQEKMAAFLGSHGDKIEAVLANNDDMALGAIEALKAAGYFTGDKYMPVVGVDATA 289 WDRVKGQEKM FL SHGDKIEAVLANNDDMALGAIEALKAAGYF+GDKYMPVVGVDATA Sbjct: 221 WDRVKGQEKMQTFLASHGDKIEAVLANNDDMALGAIEALKAAGYFSGDKYMPVVGVDATA 280 Query: 290 PAVQALQDGTMLGTVLNDANNQGKXXXXXXXXXXKGEAPTKENVGFDITDNQYVWISYKK 349 PAVQAL+DGT+LGTVLNDA +QGK KGEAP KEN GFDITD +YVWI+YKK Sbjct: 281 PAVQALEDGTLLGTVLNDAKSQGKASVAIAAALSKGEAPNKENTGFDITDGKYVWIAYKK 340 Query: 350 ITKDNVADAK 359 ITKDN+ADAK Sbjct: 341 ITKDNIADAK 350 >C0Z4D0.1 C0Z4D0_BREBN D-galactose ABC transporter substrate binding protein Length = 348 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 248/308 (80%), Positives = 275/308 (89%) Query: 52 PKVGVAIYKFDDTFMTGVRNAIDTAAKGIATVDIVDSQNSQPTQNDKVDLFITKKYDGML 111 PK+GVAIYKFDDTFMTGVRNAI AA+G A VDIVDSQN+QPTQNDKVDLFI KK + + Sbjct: 41 PKIGVAIYKFDDTFMTGVRNAISKAAEGKAEVDIVDSQNAQPTQNDKVDLFINKKVNALA 100 Query: 112 INPVDRTAAGVIIDKAKTADIPVVFLNREPLPEDMKKWDKVYYVGAKAEESGTMSGQLIV 171 INPVDRTAAGV+IDKAK A+IPVVF NREP+PEDM+KWDKVYYVGAKAEESGT+SGQLIV Sbjct: 101 INPVDRTAAGVLIDKAKQANIPVVFFNREPMPEDMQKWDKVYYVGAKAEESGTISGQLIV 160 Query: 172 DYWKAHPEADKNKDGVLQYVMLKGEPGHQDAELRTTYSIQAIEDAGIKVEKLAEDTAMWD 231 DYWKA+PEADKNKDGVLQYVMLKGEPGHQDAELRT +S++AIEDAGIKVEK+AEDTAMWD Sbjct: 161 DYWKANPEADKNKDGVLQYVMLKGEPGHQDAELRTKFSVKAIEDAGIKVEKVAEDTAMWD 220 Query: 232 RVKGQEKMAAFLGSHGDKIEAVLANNDDMALGAIEALKAAGYFTGDKYMPVVGVDATAPA 291 RVKGQEKMAAFL + GDKIEAVLANNDDMALGAIEALKA+GYF KYMPVVGVDATAPA Sbjct: 221 RVKGQEKMAAFLAASGDKIEAVLANNDDMALGAIEALKASGYFANGKYMPVVGVDATAPA 280 Query: 292 VQALQDGTMLGTVLNDANNQGKXXXXXXXXXXKGEAPTKENVGFDITDNQYVWISYKKIT 351 ++ L+ GT+LGTVLNDANNQGK KGE PTK++ GFDITD +YVW+ YKKIT Sbjct: 281 LKELEAGTLLGTVLNDANNQGKATLSIAASLAKGETPTKDSTGFDITDGKYVWVPYKKIT 340 Query: 352 KDNVADAK 359 K+N+ DAK Sbjct: 341 KENMNDAK 348 >B1DIU1.1 B1DIU1_9BACL Periplasmic binding protein/LacI transcriptional regulator Length = 338 Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust. Identities = 242/303 (79%), Positives = 267/303 (88%) Query: 52 PKVGVAIYKFDDTFMTGVRNAIDTAAKGIATVDIVDSQNSQPTQNDKVDLFITKKYDGML 111 PK GVAIYKFDDTFM+GVRN+I AA+G VDIVDSQNSQPTQNDKVDLFITKK M Sbjct: 34 PKTGVAIYKFDDTFMSGVRNSISKAAEGNVKVDIVDSQNSQPTQNDKVDLFITKKVKAMA 93 Query: 112 INPVDRTAAGVIIDKAKTADIPVVFLNREPLPEDMKKWDKVYYVGAKAEESGTMSGQLIV 171 INPVDRTAAGVIIDKA+ ADIPVVF+NREPL +D+ KWDK ++VGAKAEESGTM G++I Sbjct: 94 INPVDRTAAGVIIDKAQKADIPVVFINREPLADDLAKWDKAFFVGAKAEESGTMEGEIIA 153 Query: 172 DYWKAHPEADKNKDGVLQYVMLKGEPGHQDAELRTTYSIQAIEDAGIKVEKLAEDTAMWD 231 DYWK+HPEADKN DGVLQYVMLKGEPGHQDAELRT +S+QAIEDAGIKV+KLAEDTAMWD Sbjct: 154 DYWKSHPEADKNGDGVLQYVMLKGEPGHQDAELRTKFSVQAIEDAGIKVQKLAEDTAMWD 213 Query: 232 RVKGQEKMAAFLGSHGDKIEAVLANNDDMALGAIEALKAAGYFTGDKYMPVVGVDATAPA 291 RVKGQEKMAAFLGSHGDKIEAVLANNDDMALGAIEALKAAGYF GDK MPVVGVDAT PA Sbjct: 214 RVKGQEKMAAFLGSHGDKIEAVLANNDDMALGAIEALKAAGYFKGDKKMPVVGVDATDPA 273 Query: 292 VQALQDGTMLGTVLNDANNQGKXXXXXXXXXXKGEAPTKENVGFDITDNQYVWISYKKIT 351 +QAL+DGTMLGTVLNDA+NQGK GE PTKEN G+DITD +YVWI Y+K+T Sbjct: 274 MQALKDGTMLGTVLNDADNQGKATVMLMKVLAAGETPTKENTGYDITDGKYVWIPYQKVT 333 Query: 352 KDN 354 +++ Sbjct: 334 QES 336 >B1D852.1 B1D852_9BACL Periplasmic binding protein/LacI transcriptional regulator Length = 366 Score = 500 bits (1288), Expect = e-140, Method: Compositional matrix adjust. Identities = 242/308 (78%), Positives = 266/308 (86%) Query: 52 PKVGVAIYKFDDTFMTGVRNAIDTAAKGIATVDIVDSQNSQPTQNDKVDLFITKKYDGML 111 P VGVAIYKFDDTFMTGVRNAI+ A++G+A VDIVDSQNSQPTQNDKVDLFITKKY+ M Sbjct: 59 PTVGVAIYKFDDTFMTGVRNAIEAASQGVAKVDIVDSQNSQPTQNDKVDLFITKKYNAMA 118 Query: 112 INPVDRTAAGVIIDKAKTADIPVVFLNREPLPEDMKKWDKVYYVGAKAEESGTMSGQLIV 171 IN VDRTAA +IIDKAK+A+ PVVF NREPL EDM KWD VYYVGAKAEESGTMSG+LI+ Sbjct: 119 INAVDRTAASMIIDKAKSANTPVVFFNREPLAEDMNKWDLVYYVGAKAEESGTMSGELII 178 Query: 172 DYWKAHPEADKNKDGVLQYVMLKGEPGHQDAELRTTYSIQAIEDAGIKVEKLAEDTAMWD 231 DYWKAHPE DKNKDG LQY+MLKGEPGHQDAELRT YSIQAI DAGI VEKLAEDTAMWD Sbjct: 179 DYWKAHPEMDKNKDGKLQYIMLKGEPGHQDAELRTKYSIQAITDAGIGVEKLAEDTAMWD 238 Query: 232 RVKGQEKMAAFLGSHGDKIEAVLANNDDMALGAIEALKAAGYFTGDKYMPVVGVDATAPA 291 RVK Q+KMA FL +HGDKIEAVLANNDDMALGAIEALKAAGYF K+MPVVGVDATA A Sbjct: 239 RVKAQDKMATFLSAHGDKIEAVLANNDDMALGAIEALKAAGYFKDGKFMPVVGVDATAAA 298 Query: 292 VQALQDGTMLGTVLNDANNQGKXXXXXXXXXXKGEAPTKENVGFDITDNQYVWISYKKIT 351 +QAL +GT+LGTVLNDA NQG GE P+K N GFDITD++YVW+ YKKIT Sbjct: 299 LQALSEGTLLGTVLNDAKNQGAATLKLAAALANGETPSKVNTGFDITDSKYVWVPYKKIT 358 Query: 352 KDNVADAK 359 KDN++DA+ Sbjct: 359 KDNMSDAQ 366 >B7R6W8.1 B7R6W8_9THEO Putative uncharacterized protein Length = 344 Score = 474 bits (1219), Expect = e-132, Method: Compositional matrix adjust. Identities = 221/304 (72%), Positives = 260/304 (85%) Query: 52 PKVGVAIYKFDDTFMTGVRNAIDTAAKGIATVDIVDSQNSQPTQNDKVDLFITKKYDGML 111 P +GVAIYKFDDTFMT VR+ I AA+G A VDIVDSQNSQP QNDK+DLFITKK D ++ Sbjct: 36 PVIGVAIYKFDDTFMTSVRDNIAKAAEGKAKVDIVDSQNSQPVQNDKIDLFITKKVDALI 95 Query: 112 INPVDRTAAGVIIDKAKTADIPVVFLNREPLPEDMKKWDKVYYVGAKAEESGTMSGQLIV 171 +NPVDRTAAG II+KAK A+IPVVF+NREPLPEDM+KWDKVYYVGAKAE+SG + G+++ Sbjct: 96 VNPVDRTAAGTIIEKAKAANIPVVFINREPLPEDMQKWDKVYYVGAKAEQSGILQGEIMA 155 Query: 172 DYWKAHPEADKNKDGVLQYVMLKGEPGHQDAELRTTYSIQAIEDAGIKVEKLAEDTAMWD 231 +YWK+HPEADKN DG++QYVML GEPGHQDAELRT YSI+ +E AGIKV++LA DTAMWD Sbjct: 156 EYWKSHPEADKNHDGIMQYVMLMGEPGHQDAELRTKYSIETVEKAGIKVQELARDTAMWD 215 Query: 232 RVKGQEKMAAFLGSHGDKIEAVLANNDDMALGAIEALKAAGYFTGDKYMPVVGVDATAPA 291 RVK Q+KMAAFL ++GDKIEAV ANNDDMALGAIEALKAAGYF KY+PVVGVDAT P Sbjct: 216 RVKAQDKMAAFLAAYGDKIEAVFANNDDMALGAIEALKAAGYFKNGKYIPVVGVDATVPG 275 Query: 292 VQALQDGTMLGTVLNDANNQGKXXXXXXXXXXKGEAPTKENVGFDITDNQYVWISYKKIT 351 VQAL++GT+LGTVLNDA NQGK +G+ PTKENVG++ITD +Y+WI Y K+T Sbjct: 276 VQALKEGTLLGTVLNDAKNQGKAAFMLAYVLAQGKTPTKENVGYEITDGKYIWIPYVKVT 335 Query: 352 KDNV 355 +DNV Sbjct: 336 RDNV 339 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.131 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,872,177,651 Number of extensions: 76505663 Number of successful extensions: 152939 Number of sequences better than 1.0e-05: 1618 Number of HSP's gapped: 150821 Number of HSP's successfully gapped: 1622 Length of query: 359 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 222 Effective length of database: 1,770,017,148 Effective search space: 392943806856 Effective search space used: 392943806856 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 132 (55.5 bits)