BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0486.0004.p (246 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DMD4.1 B1DMD4_9BACL Phosphoribosylglycinamide formyltransferas... 357 4e-97 P39771.2 PURT_BACSU Phosphoribosylglycinamide formyltransferase ... 332 2e-89 B3KCQ5.1 B3KCQ5_9BACI Phosphoribosylglycinamide formyltransferase 2 329 1e-88 A7Z0Z2.1 PURT_BACA2 Phosphoribosylglycinamide formyltransferase ... 314 5e-84 B2V6A3.1 B2V6A3_SULSY Phosphoribosylglycinamide formyltransferase 2 293 1e-77 >B1DMD4.1 B1DMD4_9BACL Phosphoribosylglycinamide formyltransferase 2 EC=4.1.1.21 Length = 392 Score = 357 bits (917), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 168/240 (70%), Positives = 199/240 (82%) Query: 1 VIKPIMSSSGKGQSICRKLEDAESCWNTALEGARAKGTRVIVEAFVTFESEITLLTVRSV 60 VIKPIMSSSGKGQS+C+ D ESCWN A+EG RAK R+IVE FVTFESEITLLT+RSV Sbjct: 151 VIKPIMSSSGKGQSVCKTEADIESCWNYAMEGGRAKKARIIVEGFVTFESEITLLTIRSV 210 Query: 61 SGTIFCPPIGHIQKDGDYVESWQPHHMSAAQLAEAEGIARAVTDQLGGFGIFGVELFLTD 120 SGT FC PIGH+QKDGDY+ESWQPHHM+ Q+ +AE IA +TD+LGG+G++GVELF+T Sbjct: 211 SGTSFCAPIGHVQKDGDYIESWQPHHMTPEQIKQAEDIALRITDELGGYGLYGVELFITR 270 Query: 121 HGVLFSEVSPRPHDTGMVTMITQDLSEFALHVRAILGFPLDPVHLLSPGASATLKAETAG 180 GVLFSEVSPRPHDTGMVTM TQDLSEFALHVRAILGFP+ + LL+PGA+ TLKA+ Sbjct: 271 DGVLFSEVSPRPHDTGMVTMATQDLSEFALHVRAILGFPIPTIRLLTPGATHTLKADRES 330 Query: 181 QAFRVTGIGEALALPRTQVRVFGKPEIRPGRRMAVALSAAEDVEIARTAAKQAASMLKVE 240 +FR+ G+ +ALALP TQVRVFGKPE + GRRMAVALS+A V+ AR A+QAA L ++ Sbjct: 331 ASFRIGGVEQALALPNTQVRVFGKPETKVGRRMAVALSSAGSVDEARDLARQAAESLYIQ 390 >P39771.2 PURT_BACSU Phosphoribosylglycinamide formyltransferase 2 EC=2.1.2.- Length = 384 Score = 332 bits (850), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 157/237 (66%), Positives = 187/237 (78%) Query: 1 VIKPIMSSSGKGQSICRKLEDAESCWNTALEGARAKGTRVIVEAFVTFESEITLLTVRSV 60 V+KP+MSSSGKGQS+CR D ESCW TA+EG R K RVIVE F+ FESEITLLTVR+V Sbjct: 145 VVKPLMSSSGKGQSVCRSEADLESCWETAMEGGRVKNGRVIVEEFIPFESEITLLTVRAV 204 Query: 61 SGTIFCPPIGHIQKDGDYVESWQPHHMSAAQLAEAEGIARAVTDQLGGFGIFGVELFLTD 120 +GT FC PIGH+QKDGDY+ESWQPH M+ Q+ EA+ IA+ +TD+LGG+G+FGVELFL Sbjct: 205 NGTAFCEPIGHVQKDGDYIESWQPHDMTEQQIEEAKHIAKTITDELGGYGLFGVELFLAK 264 Query: 121 HGVLFSEVSPRPHDTGMVTMITQDLSEFALHVRAILGFPLDPVHLLSPGASATLKAETAG 180 V FSEVSPRPHDTG+VT++TQ+LSEFALHVRAILGFP+ + LSPGAS LKA Sbjct: 265 DRVYFSEVSPRPHDTGLVTLVTQNLSEFALHVRAILGFPITEITQLSPGASRPLKAPEEL 324 Query: 181 QAFRVTGIGEALALPRTQVRVFGKPEIRPGRRMAVALSAAEDVEIARTAAKQAASML 237 + V G+ ALA+P+TQVRVFGKP + GRRMAVALSAA+ VE AR AK+A L Sbjct: 325 ADYTVEGLENALAVPKTQVRVFGKPITKAGRRMAVALSAADSVETARENAKKALDQL 381 >B3KCQ5.1 B3KCQ5_9BACI Phosphoribosylglycinamide formyltransferase 2 Length = 386 Score = 329 bits (844), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 156/240 (65%), Positives = 192/240 (80%) Query: 1 VIKPIMSSSGKGQSICRKLEDAESCWNTALEGARAKGTRVIVEAFVTFESEITLLTVRSV 60 VIKP+MSSSGKGQS+CR D ESCWN A+EG R + RVI+E F++F+SEITLLTVRSV Sbjct: 145 VIKPLMSSSGKGQSVCRSEGDIESCWNIAMEGGRVQNGRVIIEEFISFQSEITLLTVRSV 204 Query: 61 SGTIFCPPIGHIQKDGDYVESWQPHHMSAAQLAEAEGIARAVTDQLGGFGIFGVELFLTD 120 +GT FC PIGHIQ+ GDY+ESWQPH MS AQ+ EA+ IAR +TD+LGG+G+FGVELFL + Sbjct: 205 NGTSFCAPIGHIQESGDYIESWQPHDMSEAQIEEAKYIARKITDELGGYGLFGVELFLAE 264 Query: 121 HGVLFSEVSPRPHDTGMVTMITQDLSEFALHVRAILGFPLDPVHLLSPGASATLKAETAG 180 V FSEVSPRPHDTG+VT++TQ+LSEFALHVRAILGFP+ + L++PGAS LKA Sbjct: 265 DKVYFSEVSPRPHDTGLVTLVTQNLSEFALHVRAILGFPIPEIELITPGASRPLKAGREL 324 Query: 181 QAFRVTGIGEALALPRTQVRVFGKPEIRPGRRMAVALSAAEDVEIARTAAKQAASMLKVE 240 + + +TG +ALA+P TQ+R+FGKP + GRR+AVALS A DVE AR+ AK A L VE Sbjct: 325 EDYTITGADQALAVPNTQLRMFGKPVTKVGRRVAVALSTAGDVEEARSRAKLALDKLAVE 384 >A7Z0Z2.1 PURT_BACA2 Phosphoribosylglycinamide formyltransferase 2 EC=2.1.2.- Length = 384 Score = 314 bits (804), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 147/223 (65%), Positives = 179/223 (80%) Query: 1 VIKPIMSSSGKGQSICRKLEDAESCWNTALEGARAKGTRVIVEAFVTFESEITLLTVRSV 60 V+KP+MSSSGKGQS+CR +SCW+ A+EG R K RVIVE F+ FESEITLLTVR+ Sbjct: 145 VVKPLMSSSGKGQSVCRSASGLKSCWDMAMEGGRVKNGRVIVEEFIPFESEITLLTVRAA 204 Query: 61 SGTIFCPPIGHIQKDGDYVESWQPHHMSAAQLAEAEGIARAVTDQLGGFGIFGVELFLTD 120 +GT FC PIGH QKDGDY+ESWQPHHM+ Q+ EA+ IA+++TD+LGG+G+FGVELFLT+ Sbjct: 205 NGTSFCAPIGHEQKDGDYIESWQPHHMTEQQIKEAKHIAKSITDELGGYGLFGVELFLTE 264 Query: 121 HGVLFSEVSPRPHDTGMVTMITQDLSEFALHVRAILGFPLDPVHLLSPGASATLKAETAG 180 V FSEVSPRPHDTG+VT++TQ+LSEFALHVRA+LGFP+ + LSPGAS LKA Sbjct: 265 DKVYFSEVSPRPHDTGLVTLVTQNLSEFALHVRAVLGFPIPEITQLSPGASRPLKAPKEL 324 Query: 181 QAFRVTGIGEALALPRTQVRVFGKPEIRPGRRMAVALSAAEDV 223 + V G+ +ALA+ TQVRVFGKP + GRRMAVALSAAE V Sbjct: 325 ADYAVEGLEKALAVKSTQVRVFGKPVTKVGRRMAVALSAAETV 367 >B2V6A3.1 B2V6A3_SULSY Phosphoribosylglycinamide formyltransferase 2 Length = 392 Score = 293 bits (749), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 140/240 (58%), Positives = 178/240 (74%), Gaps = 2/240 (0%) Query: 1 VIKPIMSSSGKGQSICRKLEDAESCWNTALEGARAKGTRVIVEAFVTFESEITLLTVRSV 60 V+KPIMSSSGKGQSI R L++ + W A E AR K VI+E F+ F+ EITLLTVR+ Sbjct: 152 VVKPIMSSSGKGQSIVRSLDEIDRAWYYAQENARGKSGEVIIEEFINFDYEITLLTVRTK 211 Query: 61 S-GTIFCPPIGHIQKDGDYVESWQPHHMSAAQLAEAEGIARAVTDQLGGFGIFGVELFLT 119 + GT+FC PIGH+Q DGDY ESWQPH MS L +A+ IA+ +TD+LGG+GIFG E+F+ Sbjct: 212 NQGTLFCEPIGHMQVDGDYWESWQPHPMSQTALNKAKEIAKKITDELGGYGIFGCEMFVK 271 Query: 120 DHGVLFSEVSPRPHDTGMVTMITQDLSEFALHVRAILGFPLDPVHLLSPGASATLKAETA 179 + V F+E+SPRPHDTGMVTMITQ++SEF +H+RAILG P+D + LLSPGAS A Sbjct: 272 EDEVWFNEISPRPHDTGMVTMITQNMSEFEIHLRAILGLPID-IKLLSPGASYCFHASDY 330 Query: 180 GQAFRVTGIGEALALPRTQVRVFGKPEIRPGRRMAVALSAAEDVEIARTAAKQAASMLKV 239 G A + G+ EAL++P T+VR+FGKP RP RRM VAL+ E++E AR AK AA +KV Sbjct: 331 GVAPKYKGLEEALSIPGTKVRIFGKPTTRPKRRMGVALAVGENIEDARKKAKLAAESMKV 390 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,311,677,587 Number of extensions: 49483393 Number of successful extensions: 144692 Number of sequences better than 1.0e-05: 1782 Number of HSP's gapped: 142588 Number of HSP's successfully gapped: 1782 Length of query: 246 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 114 Effective length of database: 1,817,122,223 Effective search space: 207151933422 Effective search space used: 207151933422 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)