BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0486.0003.p
         (119 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C1W7N1.1 C1W7N1_9GAMM Phosphoribosylglycinamide formyltransferas...   168   1e-40
Q48LW5.1 PURT_PSE14 Phosphoribosylglycinamide formyltransferase ...   168   2e-40
C1SXQ1.1 C1SXQ1_DESBA Phosphoribosylglycinamide formyltransferas...   167   3e-40
C4XMB3.1 C4XMB3_9DELT Phosphoribosylglycinamide formyltransferase     167   4e-40
A7MEA0.2 PURT_ENTS8 Phosphoribosylglycinamide formyltransferase ...   166   6e-40

>C1W7N1.1 C1W7N1_9GAMM Phosphoribosylglycinamide formyltransferase 2
           EC=2.1.2.-
          Length = 393

 Score =  168 bits (426), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 82/109 (75%), Positives = 95/109 (87%)

Query: 1   LGSGELGKEVIIEAQRLGVETVAVDRYEAAPAMGVAHRSHVIDMLDAEALKKLIRAEKPD 60
           LGSGELGKEV+IE QR GVE +AVDRY  APAM VAHRSHV++ML+ +ALK++I  EKPD
Sbjct: 18  LGSGELGKEVVIELQRFGVEVIAVDRYANAPAMQVAHRSHVVNMLNGDALKRVIVEEKPD 77

Query: 61  LIVPEIEAIATHALQELEEEGFLVVPTARAARLTMDREGIRRLAAEELG 109
           LIVPEIEAIAT  L ++E+EGF V+PTARA RLTMDREGIRRLAAE+LG
Sbjct: 78  LIVPEIEAIATETLLDVEKEGFTVIPTARATRLTMDREGIRRLAAEDLG 126


>Q48LW5.1 PURT_PSE14 Phosphoribosylglycinamide formyltransferase 2 EC=2.1.2.-
          Length = 393

 Score =  168 bits (425), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 85/108 (78%), Positives = 93/108 (86%)

Query: 1   LGSGELGKEVIIEAQRLGVETVAVDRYEAAPAMGVAHRSHVIDMLDAEALKKLIRAEKPD 60
            GSGELGKEV+IE QRLGVE +AVDRYE APAM VAHRSHVI+MLD  AL+ +I AEKPD
Sbjct: 18  CGSGELGKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGAALRAVIEAEKPD 77

Query: 61  LIVPEIEAIATHALQELEEEGFLVVPTARAARLTMDREGIRRLAAEEL 108
            IVPEIEAIAT  L ELE EGF V+PTARAA+LTM+REGIRRLAAEEL
Sbjct: 78  FIVPEIEAIATATLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEEL 125


>C1SXQ1.1 C1SXQ1_DESBA Phosphoribosylglycinamide formyltransferase 2
           EC=2.1.2.-
          Length = 393

 Score =  167 bits (423), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 82/109 (75%), Positives = 93/109 (85%)

Query: 1   LGSGELGKEVIIEAQRLGVETVAVDRYEAAPAMGVAHRSHVIDMLDAEALKKLIRAEKPD 60
           LGSGELGKEV+IE QRLGVE +AVDRYE APAM VAHRSH + MLD  AL+++I  EKP+
Sbjct: 18  LGSGELGKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHTVSMLDGPALRRIIETEKPN 77

Query: 61  LIVPEIEAIATHALQELEEEGFLVVPTARAARLTMDREGIRRLAAEELG 109
            IVPEIEAIAT  L ELE EG+ V+PTARAA+LTM+REGIRRLAAEELG
Sbjct: 78  FIVPEIEAIATDTLVELEAEGYTVIPTARAAKLTMNREGIRRLAAEELG 126


>C4XMB3.1 C4XMB3_9DELT Phosphoribosylglycinamide formyltransferase
          Length = 393

 Score =  167 bits (422), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 87/109 (79%), Positives = 93/109 (85%)

Query: 1   LGSGELGKEVIIEAQRLGVETVAVDRYEAAPAMGVAHRSHVIDMLDAEALKKLIRAEKPD 60
           LGSGELGKEV IEAQRLGVE +AVDRY  APAM VAHR HV+ MLDA AL+ +I AEKPD
Sbjct: 18  LGSGELGKEVAIEAQRLGVEVIAVDRYPNAPAMQVAHRRHVVSMLDAPALRSIIEAEKPD 77

Query: 61  LIVPEIEAIATHALQELEEEGFLVVPTARAARLTMDREGIRRLAAEELG 109
            IVPEIEAIAT  L +LE EG+ VVPTARAARLTMDREGIRRLAAEELG
Sbjct: 78  YIVPEIEAIATEELIKLEAEGYPVVPTARAARLTMDREGIRRLAAEELG 126


>A7MEA0.2 PURT_ENTS8 Phosphoribosylglycinamide formyltransferase 2 EC=2.1.2.-
          Length = 392

 Score =  166 bits (420), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 86/109 (78%), Positives = 93/109 (85%)

Query: 1   LGSGELGKEVIIEAQRLGVETVAVDRYEAAPAMGVAHRSHVIDMLDAEALKKLIRAEKPD 60
           LGSGELGKEV IE QRLG+E +AVDRY  APAM VAHRSHVI+MLD  ALKKL+  E PD
Sbjct: 18  LGSGELGKEVAIECQRLGIEVIAVDRYADAPAMQVAHRSHVINMLDGAALKKLVAQEMPD 77

Query: 61  LIVPEIEAIATHALQELEEEGFLVVPTARAARLTMDREGIRRLAAEELG 109
            IVPEIEAIAT AL ELE++G  VVPTARAARLTM+REGIRRLAAEELG
Sbjct: 78  FIVPEIEAIATDALVELEQQGQRVVPTARAARLTMNREGIRRLAAEELG 126


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.134    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 605,913,890
Number of extensions: 23371209
Number of successful extensions: 88852
Number of sequences better than 1.0e-05: 576
Number of HSP's gapped: 88922
Number of HSP's successfully gapped: 576
Length of query: 119
Length of database: 3,060,696,203
Length adjustment: 85
Effective length of query: 34
Effective length of database: 2,259,909,928
Effective search space: 76836937552
Effective search space used: 76836937552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)