BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0486.0002.p (538 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K703.1 B3K703_9BACI Dynamin family protein 486 e-135 B1DMP9.1 B1DMP9_9BACL Dynamin family protein 323 2e-86 C0ZJ00.1 C0ZJ00_BREBN Putative uncharacterized protein 281 1e-73 A9U6L9.1 A9U6L9_PHYPA Predicted protein 277 2e-72 C5D2J0.1 C5D2J0_9BACI Dynamin family protein 262 6e-68 >B3K703.1 B3K703_9BACI Dynamin family protein Length = 1213 Score = 486 bits (1251), Expect = e-135, Method: Compositional matrix adjust. Identities = 263/525 (50%), Positives = 327/525 (62%), Gaps = 4/525 (0%) Query: 1 MKSREDFWEDILHSFSVLQLAAPQPETWTAAAAELQVGGLHPSALPHAGFLRXXXXXXXX 60 MKSR+ +W+D+ +SF VL L P P W + A L G+HP+ LPH GFL+ Sbjct: 683 MKSRDMWWDDLKYSFGVLGLQEPSPANWRSVAEGLNPAGIHPAGLPHYGFLKAAASGWDE 742 Query: 61 XXXXXXTVRTVDLQEYRTLVAEETRACFIQGIDLYYDCPLTASGIVLVDTPGADSLHARH 120 T TV+L EYR VA+ET++CF+ GIDLYY CP+T GIVLVDTPGADSLHARH Sbjct: 743 MESRLGTTETVELAEYRGYVADETKSCFVDGIDLYYSCPMTEQGIVLVDTPGADSLHARH 802 Query: 121 TGVTFGYMKNADAICFVTYYNHAFSKADRGLLAQLGRIKDSFALDKMFFIINASDLASDE 180 TGVTF Y+KNADAI +VTYYNHAFSKADR L+QLGR+KDSFALDKMFFI+NA+DLA E Sbjct: 803 TGVTFNYIKNADAIVYVTYYNHAFSKADRQFLSQLGRVKDSFALDKMFFIVNAADLAQSE 862 Query: 181 DELQEVQQHVAQNLRAGGLMKPQMYSLSSLLALEGKTAGSRELYEASRFSSFEQALADFA 240 DEL EV +HV NL A G+ P ++ +SSL AL+ K G E +AS F FE+AL FA Sbjct: 863 DELNEVVKHVRTNLTASGVGSPHIFPVSSLAALDNKRQGDEEKLQASGFPVFEEALGRFA 922 Query: 241 GGELPRLSLAAAKDSLSTVRRRTEEWQEKARQAAGQREAQMRELEDQCRIAEQRLRQLAG 300 ELPRLS A D +++VR R W E A Q R+ ++ ELE+ A RL LA Sbjct: 923 VEELPRLSQRAGYDEIASVRDRIRGWAEMAAQDETTRKRKIGELEEVQNQAMARLNALA- 981 Query: 301 EERPGRDLRREGEELLYHVRQRISFAFGRFFQESFHPSLLREDGGNLKEIFTACGRELER 360 E+ RD+ +E ELL+HVRQR+ +A RFFQESF+PS+LRED G+LK F ACGR+L R Sbjct: 982 EQEMARDIGQESSELLFHVRQRLDYAMNRFFQESFNPSVLREDAGHLKSAFAACGRDLMR 1041 Query: 361 TVQRELEQELWATTXXXXXXXXXXXXXXXXXXXXXXSIPAEDLQF-LQNDKDPWPSPARL 419 T+ EL+QELWATT + AE L ++ D D W P Sbjct: 1042 TMSVELDQELWATTLRLETAGRKLTEAAAFKAAADINGMAEGLSLAIRRDPD-WAPPELD 1100 Query: 420 ECRLNPL-DWPALWSRFKSPRHFFEGVGRNEVRAAAEPWMKESVAGAAEELESFLLDFYA 478 E L DW WS FK+P+HFFEG G +++R AAEP +KE+VAG E L D Y Sbjct: 1101 ETELQIQGDWLTFWSTFKNPKHFFEGGGSSKLREAAEPKVKEAVAGVVGLREEQLTDHYV 1160 Query: 479 RSVDAALSRAGDALRESLTEREAAITELLKGGDSAEHWHRLSGEL 523 R + +L AL E L E AAI L+ G S W +L+ +L Sbjct: 1161 RMSERSLQHHVSALEEQLKESMAAILGSLQDGQSPLMWRQLADDL 1205 >B1DMP9.1 B1DMP9_9BACL Dynamin family protein Length = 604 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 203/532 (38%), Positives = 277/532 (52%), Gaps = 27/532 (5%) Query: 1 MKSREDFWEDILHSFSVLQLAAPQPETWTAAAAELQVGGLHPSAL-----PHAGFLRXXX 55 MKSR+ ED+ +S ++L A + A+A L + L P + PH FLR Sbjct: 68 MKSRDAIIEDLRYSLALLGEDASESALPNASAIMLAIDMLTPDVIHAGGRPHYSFLRAAR 127 Query: 56 XXXXXXXXXXXTVRTVDLQEYRTLVAEETRACFIQGIDLYYDCPLTASGIVLVDTPGADS 115 T +V EY VAEE+R+CF+ I+L+YDCPLT GIVLVDTPGADS Sbjct: 128 KGWEAHEALLGTEISVSQDEYEKFVAEESRSCFVSEIELHYDCPLTRQGIVLVDTPGADS 187 Query: 116 LHARHTGVTFGYMKNADAICFVTYYNHAFSKADRGLLAQLGRIKDSFALDKMFFIINASD 175 ++ARHTGV F Y+KNADA+ FVTYYNHAFS+ADR L QLGR+KD F LDKMFF++NA+D Sbjct: 188 VNARHTGVAFNYIKNADAVLFVTYYNHAFSQADRQFLMQLGRVKDQFELDKMFFLVNAAD 247 Query: 176 LASDEDELQEVQQHVAQNLRAGGLMKPQMYSLSSLLALEGKTAGSRELYEASRFSSFEQA 235 LA+DE+EL+ V HV NL G+ P+++ +SSL L+ K G+ +L S +FEQ+ Sbjct: 248 LAADEEELEGVLSHVETNLLQHGIRNPRLFPVSSLQGLDAKMDGNMDLLSQSGIGAFEQS 307 Query: 236 LADFAGGELPRLSLAAAKDSLSTVRRRTEEWQEKARQAAGQREAQMRELEDQCRIAEQRL 295 F +L +L++ AA+ ++ W + A A R+A+ L A + Sbjct: 308 FLGFVQNDLGKLAINAAEQEIARAASTVAGWLKSAAGDAASRQAESDRLGKLQLEANASI 367 Query: 296 RQLAGEERPGRDLRREGEELLYHVRQRISFAFGRFFQESFHPSLLREDGGNLKEIFTACG 355 R + P + L +E ELLY+V QRI FG F+ +F+PS L++DG +L+++ Sbjct: 368 RTFQENDPPAQML-QELNELLYYVVQRIQLRFGEFYNYAFNPSTLQDDGRDLRKMIWTAW 426 Query: 356 RELERTVQRELEQELWATTXXXXXXXXXXXXXXXXXXXXXXSIPAEDLQFLQNDKDPWPS 415 EL+R VQ EL QEL ATT + P+ Sbjct: 427 LELQRQVQTELSQELQATTLRMDRKVNSLLKKLYANLTEQLELLIAGYSSAAYTAKDLPT 486 Query: 416 P-ARLECRLNPLDWPALWSRFKSPRHFFEGVGRNEVRA--------AAEPWMKESVAG-- 464 P A E +++ +D LWSRFKSPR FFEG G+ ++R A WM E + Sbjct: 487 PDAVTEWKMSGVDAKWLWSRFKSPRQFFEGDGKGQLRKELEEALSPALHMWMNEHIDSWS 546 Query: 465 ---------AAEELESFLLDFYARSVDAALSRAGD-ALRESLTEREAAITEL 506 AEE S L D +R V + D A E L I EL Sbjct: 547 GLYTGLWRQCAEETSSALADDLSRYVQGMQTSLSDEADTEQLGRLHQQIAEL 598 >C0ZJ00.1 C0ZJ00_BREBN Putative uncharacterized protein Length = 655 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 194/563 (34%), Positives = 286/563 (50%), Gaps = 50/563 (8%) Query: 1 MKSREDFWEDILHSFSVLQLAAPQPETWTAAAAELQVGGLHPSALPHAGFLRXXXXXXXX 60 +K RE +D++ S +V L A + A ++ V + P+A PH FL+ Sbjct: 102 LKEREAIEQDVIRSLAVFGLVASDLDGALAELGKIDVAQIPPTAKPHYTFLKAVTKGLPE 161 Query: 61 XXXXXXTVRTVDLQEYRTLVAEETRACFIQGIDLYYDCPLTASGIVLVDTPGADSLHARH 120 VD+Q ++ VA+E +ACF + I+L+Y CPLT GIVLVDTPGADS++ARH Sbjct: 162 MAAHLGGELLVDMQAFKGFVAKEEKACFAEYIELFYSCPLTDQGIVLVDTPGADSINARH 221 Query: 121 TGVTFGYMKNADAICFVTYYNHAFSKADRGLLAQLGRIKDSFALDKMFFIINASDLASDE 180 TGV F YMKNADA+ FVTYYNHAFS+ADR L Q+GR+KD+F +DKMFFI+NA DLA+++ Sbjct: 222 TGVAFEYMKNADAVLFVTYYNHAFSQADREFLLQMGRVKDTFEMDKMFFIVNACDLAAND 281 Query: 181 DELQEVQQHVAQNLRAGGLMKPQMYSLSSLLAL------EGKTAGSRE-LY--------- 224 +ELQ V HV +NL + G+ P++Y +SS AL +GK A S E +Y Sbjct: 282 EELQGVITHVEKNLLSCGIRLPRIYPVSSQTALLARMHEKGKLAASAEKVYRQRTNTAEG 341 Query: 225 -------EASRFS---SFEQALADFAGGELPRLSLAAAKDSLSTVRRRTEEWQEKARQAA 274 EA +FS SFE F EL ++++ AA + +RR + E R A Sbjct: 342 EQLMPADEAFKFSGMASFEAEFLRFTIEELTQIAVNAA---IGEIRRAHDTLTEFMRMAQ 398 Query: 275 GQREAQMRELEDQCRIAEQRLRQLAGEERPG--RDLRREGEELLYHVRQRISFAFGRFFQ 332 + ++ E Q L + RDL +E EELLY+VRQR+ F F F Sbjct: 399 SGEDERLLRKEAASNAKTQALSAVEALSTASFERDLAKEREELLYYVRQRLFFRFNELFN 458 Query: 333 ESFHPSLLREDGGNLKEIFTACGRELERTVQRELEQELWATTXXXXXXXXXXXXXXXXXX 392 +F+P+++++DG N+K+ C +L R++ +L QEL ATT Sbjct: 459 LAFNPAVIKDDGRNMKQALQGCLTDLLRSISYDLAQELRATT-------LRLEKFTNKQG 511 Query: 393 XXXXSIPAEDLQFLQNDKDPWPSPARLECRLN-----PLDWPAL---WSRFKSPRHFFEG 444 ++ +D+Q P R L+ P+ A S FK+ + FFE Sbjct: 512 TTLVAVWQQDVQGYAAGLTLAPYQQRQVETLSFANELPVAESAFASAVSLFKNTKDFFEQ 571 Query: 445 VGRNEVRAAAEPWMKESVAGAAE----ELESFLLDFYARSVDAALSRAGDALRESLTERE 500 G+ ++R E M+E V+ E +L+ + V + +R D + E T Sbjct: 572 DGKAKMRDELEKRMQEPVSAYVEIGNKQLDEQFSTLFQELVASERNRVIDQINEYFTGLF 631 Query: 501 AAITELLKGGDSAEHWHRLSGEL 523 AA+ + + A R++ EL Sbjct: 632 AALEMNVDLDELAAKVSRVAAEL 654 >A9U6L9.1 A9U6L9_PHYPA Predicted protein Length = 1049 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 180/497 (36%), Positives = 255/497 (51%), Gaps = 42/497 (8%) Query: 1 MKSREDFWEDILHSFSVLQLAAPQPETWTAAAAELQVGGLHPSALPHAGFLRXXXXXXXX 60 +KSR+ +D+L S +V L A ET A ++ V + P+A PH FL+ Sbjct: 102 LKSRDAIEQDVLRSLAVFGLHASGLETALAELGKIDVAQIPPTAKPHYTFLKAVTKGLPE 161 Query: 61 XXXXXXTVRTVDLQEYRTLVAEETRACFIQGIDLYYDCPLTASGIVLVDTPGADSLHARH 120 VD+Q ++ VA+E +ACF + I+L+Y CPLT GIVLVDTPGADS++ARH Sbjct: 162 MGAHLDGELLVDMQAFKGFVAKEEKACFAEYIELFYSCPLTDQGIVLVDTPGADSINARH 221 Query: 121 TGVTFGYMKNADAICFVTYYNHAFSKADRGLLAQLGRIKDSFALDKMFFIINASDLASDE 180 TGV F YMKNADA+ FVTYYNHAFS+ADR L Q+GR+KD+F +DKMFFI+NA+DLA+ E Sbjct: 222 TGVAFEYMKNADAVLFVTYYNHAFSQADREFLLQMGRVKDTFEMDKMFFIVNAADLAASE 281 Query: 181 DELQEVQQHVAQNLRAGGLMKPQMYSLSSLLAL------EGKTAGS-------------- 220 +ELQ V HV +NL G+ P++Y +SS AL +GK A S Sbjct: 282 EELQGVITHVEKNLLTCGIRLPRIYPVSSQTALLARMHEKGKLAASAEKVYRQRTQTAEG 341 Query: 221 ------RELYEASRFSSFEQALADFAGGELPRLSLAAAKDSLSTVRRRTEEWQEKARQAA 274 E ++ S ++FE F EL ++++ AA + E+ A+ Sbjct: 342 AELMPAEEAFKLSGMANFEAEFLRFTIEELTQIAVNAAIGEIRRAHHTLTEFMRMAQSGE 401 Query: 275 GQREAQMRELEDQCRIAEQRLRQLAGEERPGRDLRREGEELLYHVRQRISFAFGRFFQES 334 +R A+ + A + LA RDL +E EELLY+V+QR+ F F F + Sbjct: 402 SERLARKEAAQTAQASALTAVESLATNSFE-RDLAKEREELLYYVKQRLFFRFNELFNFA 460 Query: 335 FHPSLLREDGGNLKEIFTACGRELERTVQRELEQELWATTXXXXXXXXXXXXXXXXXXXX 394 F+ S+L++DG N+K+ +L R++ +L QEL ATT Sbjct: 461 FNSSVLKDDGRNMKQALQGSLTDLLRSISYDLAQELRATTLRLEKFLNKQGVMLAQQWQ- 519 Query: 395 XXSIPAEDLQFLQNDKDPWP-SPARLECRLNPLDWPALWSR-------FKSPRHFFEGVG 446 D+Q N P P ++E + P S FK+ + FFE G Sbjct: 520 ------NDVQAFANGLTLAPYQPRQVETLQFAEELPVAVSAFQPALALFKNTKDFFEQDG 573 Query: 447 RNEVRAAAEPWMKESVA 463 + +VR E M+E VA Sbjct: 574 KLKVRDELEKRMQEPVA 590 >C5D2J0.1 C5D2J0_9BACI Dynamin family protein Length = 1228 Score = 262 bits (670), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 152/384 (39%), Positives = 221/384 (57%), Gaps = 16/384 (4%) Query: 1 MKSREDFWEDILHSFSVLQLAAPQPETWTAA------AAELQVGGLHPSALPHAGFLRXX 54 +KS + + D+ S + A ETW A A+LQ G H PH FL+ Sbjct: 692 VKSDKQLFSDVQASLRYFHMNA---ETWDEALAMCEKIADLQEAGAHEK--PHYSFLQSV 746 Query: 55 XXXXXXXXXXXXTVRTVDLQEYRTLVAEETRACFIQGIDLYYDCPLTASGIVLVDTPGAD 114 + + E+ VAEET ACFI+ ++L+YDC LT GI LVDTPGAD Sbjct: 747 ISGFERMKDHLGRKLRIGIDEFVQYVAEETTACFIESVELHYDCELTRQGITLVDTPGAD 806 Query: 115 SLHARHTGVTFGYMKNADAICFVTYYNHAFSKADRGLLAQLGRIKDSFALDKMFFIINAS 174 S++ARHTGV F Y+KNADAI FVTYYNHAFS+ADR L QLGR+KD+FA+DKMFFI+NA+ Sbjct: 807 SINARHTGVAFEYIKNADAILFVTYYNHAFSRADREFLIQLGRVKDTFAMDKMFFIVNAA 866 Query: 175 DLASDEDELQEVQQHVAQNLRAGGLMKPQMYSLSSLLALEGKTA----GSRELYEASRFS 230 DLA +EL V +V + L G+ P++Y+LSS AL+ KT G S Sbjct: 867 DLAHSREELNAVLAYVEEQLAQFGIRFPRLYALSSRFALDEKTGKKADGGYGFLTESGIR 926 Query: 231 SFEQALADFAGGELPRLSLAAAKDSLSTVRRRTEEWQEKARQAAGQREAQMRELEDQCRI 290 FE+ F EL +++ A + ++ ++ + A+Q+ ++ A+ R L Q + Sbjct: 927 QFEEDFTRFITEELTEVAVRGAYAEMKRAQKTLLDYIDAAQQSNEEKAAKQRAL-SQEQT 985 Query: 291 AEQRLRQLAGEERPGRDLRREGEELLYHVRQRISFAFGRFFQESFHPSLLREDGGNLKEI 350 A +L + +++E EL+Y+V+QR+SF F +F+ESF+P+ LR+DG ++++ Sbjct: 986 AIHKLLDSVSIDHDIHAMKQEIAELVYYVKQRVSFRFNDWFKESFNPASLRDDGRDIRQA 1045 Query: 351 FTACGRELERTVQRELEQELWATT 374 AC EL +V +L QE+ AT+ Sbjct: 1046 LRACLEELLHSVGFDLSQEMRATS 1069 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,920,353,576 Number of extensions: 112502784 Number of successful extensions: 371352 Number of sequences better than 1.0e-05: 166 Number of HSP's gapped: 371132 Number of HSP's successfully gapped: 167 Length of query: 538 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 397 Effective length of database: 1,732,333,088 Effective search space: 687736235936 Effective search space used: 687736235936 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)