BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0483.0004.p (213 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KCG5.1 B3KCG5_9BACI Putative uncharacterized protein 238 4e-61 B3K7S0.1 B3K7S0_9BACI Putative uncharacterized protein 196 1e-48 B4CYS6.1 B4CYS6_9BACT Membrane-bound dehydrogenase domain protein 88 4e-16 A7NS76.1 A7NS76_ROSCS Putative uncharacterized protein 87 1e-15 A5UYV8.1 A5UYV8_ROSS1 Putative uncharacterized protein 86 2e-15 >B3KCG5.1 B3KCG5_9BACI Putative uncharacterized protein Length = 210 Score = 238 bits (606), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 109/205 (53%), Positives = 142/205 (69%) Query: 6 LKALALGSYTEVKYHPFAGVDRVFEELLGEELQVQSTEDYSLLSKDSLSEYKLVIAYTEF 65 +KA+ALG Y KYHPF +DR + + + V+ T+DY++L KD L Y L I+Y EF Sbjct: 1 MKAIALGQYEGAKYHPFKQIDRELQTIFEPAMDVECTDDYAVLQKDKLEGYDLFISYAEF 60 Query: 66 SDHKIPPEQSGGFLSYVASGGGLLVVHNGISLQRNQELGVMLGGHFTHHPAYTSLQMTVP 125 SD ++P Q +SYV +GGGLLV+HNGISLQR+ EL ++GG FT HPAYTSL + Sbjct: 61 SDGEMPENQVQALISYVRNGGGLLVIHNGISLQRSTELEKLIGGRFTGHPAYTSLPVRYQ 120 Query: 126 ATGHPIMEGITDFVMEDEPYYFDMQPHFETTILAEYPHGGAMRPAAWCHEFGQGRVVYLM 185 + HPI+E +TDF +++EPY F++ PH T + AEY H G PAAW H +G GRVVYLM Sbjct: 121 SGSHPIVESLTDFTIDEEPYRFELSPHETTVVFAEYEHDGQRWPAAWAHPYGSGRVVYLM 180 Query: 186 PGHHLPSFSVEPFRKMIKRGGLWAA 210 PGHHLPSF +E R +I+ GLWAA Sbjct: 181 PGHHLPSFRIESVRHLIRESGLWAA 205 >B3K7S0.1 B3K7S0_9BACI Putative uncharacterized protein Length = 212 Score = 196 bits (498), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 95/208 (45%), Positives = 126/208 (60%) Query: 3 MGELKALALGSYTEVKYHPFAGVDRVFEELLGEELQVQSTEDYSLLSKDSLSEYKLVIAY 62 M + KAL LGSYT K+HP G+D+ LL + VQ TE++ +L + +L Y+L IAY Sbjct: 1 MDKRKALLLGSYTHPKFHPLQGIDKQITHLLNDMFTVQCTENHKMLHESNLYPYELCIAY 60 Query: 63 TEFSDHKIPPEQSGGFLSYVASGGGLLVVHNGISLQRNQELGVMLGGHFTHHPAYTSLQM 122 ++ D ++ P Q+ G LSYV+ GGGLLV+HNG++L EL ++G F HP L Sbjct: 61 SDLWDERVSPRQTAGLLSYVSGGGGLLVIHNGVTLANRYELAQLIGARFDGHPPMEKLYF 120 Query: 123 TVPATGHPIMEGITDFVMEDEPYYFDMQPHFETTILAEYPHGGAMRPAAWCHEFGQGRVV 182 T H I EG+ FV+++EPY F P E T+L Y + G PAAWCH +G GRVV Sbjct: 121 VPGETDHDITEGVEPFVLDEEPYRFVFSPFTEKTVLLHYDYEGKQWPAAWCHTYGIGRVV 180 Query: 183 YLMPGHHLPSFSVEPFRKMIKRGGLWAA 210 +LMPGHH PSF R MI + WAA Sbjct: 181 FLMPGHHEPSFLQPQLRLMITQAAKWAA 208 >B4CYS6.1 B4CYS6_9BACT Membrane-bound dehydrogenase domain protein Length = 1077 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 59/212 (27%), Positives = 97/212 (45%), Gaps = 10/212 (4%) Query: 4 GELKALALGSYTEVKYHPFAGVDRVFEELLGEE---LQVQSTEDYSLLSKDSLSEYKLVI 60 G ++ L LG + +++ H + E LG E +T D L++++LS Y ++ Sbjct: 22 GPIRVLFLG-HEDLRVHNSCSAAALLMEKLGREAIYFDYVTTPD--CLNRETLSHYDALM 78 Query: 61 AYTEFSDHKIPPEQSGGFLSYVASGGGLLVVHNGISLQRNQ-ELGVMLGGHFTHHPAYTS 119 Y + KI P+Q +V SG G L +H+ + N+ ++G F H A Sbjct: 79 LYANYP--KISPDQFAALNEFVESGHGFLPIHSASACFGNEPRFIALVGARFKTH-ATGV 135 Query: 120 LQMTVPATGHPIMEGITDFVMEDEPYYFDMQPHFETTILAEYPHGGAMRPAAWCHEFGQG 179 + + HPIM+G+ ++ DE Y D +LAE G P W E G+G Sbjct: 136 FKAAIVDKAHPIMQGVNEYETWDETYIHDQHNTLGRKLLAERVEGAMREPWTWVREQGKG 195 Query: 180 RVVYLMPGHHLPSFSVEPFRKMIKRGGLWAAG 211 RV Y GH ++ F+KM++ +W+ G Sbjct: 196 RVFYTASGHDKRTWENADFQKMLRNAIIWSVG 227 >A7NS76.1 A7NS76_ROSCS Putative uncharacterized protein Length = 217 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 65/204 (31%), Positives = 94/204 (46%), Gaps = 16/204 (7%) Query: 19 YHPFAGVDRVFEELL---GEELQVQSTEDYSLLSKDSLSEYKLVIAYTEFSDHKIPPEQS 75 + P VD +F LL G E+ + T D S L ++ L Y L++ S I EQ Sbjct: 14 HEPKRCVD-IFAPLLRAEGYEVTISDTLD-SYLDRERLHAYSLIVQVYTMS--TITREQE 69 Query: 76 GGFLSYVASGGGLLVVHNGIS--LQRNQELGVMLGGHFTHHPA-YTSLQMTVPATGHPIM 132 G L +ASG G H G++ +++ + M+GG + HP + + HPI Sbjct: 70 RGLLDAIASGVGFAGWHGGMADAFRQSTDYQFMVGGQWVAHPGNIIDYTVNIINHDHPIT 129 Query: 133 EGITDFVMEDEPYYFDMQPH----FETTILAEYPHG--GAMRPAAWCHEFGQGRVVYLMP 186 G+ DF M E YY + P TT EY G + P W +G+GRV Y Sbjct: 130 AGLNDFRMHSEQYYMHVDPSNHVLATTTFSGEYCPWIEGVVMPVVWTRMWGKGRVSYCSL 189 Query: 187 GHHLPSFSVEPFRKMIKRGGLWAA 210 GH F V R++++RG LWA+ Sbjct: 190 GHVARDFDVPEARELVRRGMLWAS 213 >A5UYV8.1 A5UYV8_ROSS1 Putative uncharacterized protein Length = 217 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/205 (32%), Positives = 98/205 (47%), Gaps = 18/205 (8%) Query: 19 YHPFAGVDRVFEELL---GEELQVQSTEDYSLLSKDSLSEYKLVIAYTEFSDHKIPPEQS 75 + P VD +F LL G E+ + T D S L ++ + Y L++ ++ I EQ Sbjct: 14 HEPKQCVD-IFAPLLRAEGYEITISDTLD-SYLDRERMHSYSLIVQV--YTMATITREQE 69 Query: 76 GGFLSYVASGGGLLVVHNGIS--LQRNQELGVMLGGHFTHHPAYTSLQMTVPATGH--PI 131 G L +ASG G H G++ +++ + M+GG + HP + TV T H PI Sbjct: 70 QGLLEAIASGVGFAGWHGGMADAFRQSTDYQFMVGGQWVAHPG-NIIDYTVNITNHDHPI 128 Query: 132 MEGITDFVMEDEPYYFDMQP--HF--ETTILAEYPHG--GAMRPAAWCHEFGQGRVVYLM 185 G+ DF M E YY + P H TT EY G + P W +G+GRV Y Sbjct: 129 TAGLNDFRMHSEQYYMHVDPGNHVLATTTFSGEYCPWIEGVVMPVVWTKMWGKGRVSYCS 188 Query: 186 PGHHLPSFSVEPFRKMIKRGGLWAA 210 GH F V R++++RG LWA+ Sbjct: 189 LGHVARDFDVPEARELVRRGMLWAS 213 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,409,779,589 Number of extensions: 60502185 Number of successful extensions: 120627 Number of sequences better than 1.0e-05: 128 Number of HSP's gapped: 120543 Number of HSP's successfully gapped: 129 Length of query: 213 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 83 Effective length of database: 1,835,964,253 Effective search space: 152385032999 Effective search space used: 152385032999 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)