BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0483.0002.p
         (120 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K9M0.1 B3K9M0_9BACI Regulatory protein MerR                         170   5e-41
B1DHF1.1 B1DHF1_9BACL Transcriptional regulator, MerR family          169   9e-41
Q8DUZ8.1 Q8DUZ8_STRMU Putative transcriptional regulator              104   3e-21
C3DSS7.1 C3DSS7_BACTS Transcriptional regulator, MerR                 102   2e-20
C2VJD3.1 C2VJD3_BACCE Transcriptional regulator, MerR                 101   2e-20

>B3K9M0.1 B3K9M0_9BACI Regulatory protein MerR
          Length = 125

 Score =  170 bits (430), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 82/112 (73%), Positives = 95/112 (84%)

Query: 1   MKIGELAERTGVSIRSLRYYERQGLITPLRKANGYREYSALAVETVETIKLYLNLGLSTE 60
           MKIGELA RTGVSIRSLRYYE+QGL+TP+R  NGYREYS LA E V TI+LYLNLGL+TE
Sbjct: 1   MKIGELAARTGVSIRSLRYYEQQGLLTPVRNENGYREYSMLAEEQVRTIQLYLNLGLTTE 60

Query: 61  EIAGFLNCVLMKKEAFCAEVMPLYRSKLEDIERQLLQLNQIKSNLEERIASI 112
           +IAGFL+CVL  KEAFCAEV P++R K+ +IE Q+ QLN IK NLEER+ SI
Sbjct: 61  QIAGFLHCVLKNKEAFCAEVFPIFRQKIAEIEAQIHQLNHIKMNLEERMQSI 112


>B1DHF1.1 B1DHF1_9BACL Transcriptional regulator, MerR family
          Length = 121

 Score =  169 bits (427), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 84/120 (70%), Positives = 100/120 (83%)

Query: 1   MKIGELAERTGVSIRSLRYYERQGLITPLRKANGYREYSALAVETVETIKLYLNLGLSTE 60
           MKIGELA RTGVS+RSLRYYE QGL+TP+R  NGYREYS LA E V TI+LYL LGLSTE
Sbjct: 1   MKIGELATRTGVSLRSLRYYEEQGLLTPIRLENGYREYSPLAEEQVRTIQLYLQLGLSTE 60

Query: 61  EIAGFLNCVLMKKEAFCAEVMPLYRSKLEDIERQLLQLNQIKSNLEERIASIQQEQKESE 120
           +I+GFL+CVL  KEAFC EV+P+YR K+E+IE Q+  L+ IK NLE+RI SI +EQKE+E
Sbjct: 61  QISGFLHCVLKNKEAFCKEVLPIYREKMEEIETQIGLLSSIKRNLEDRIQSILEEQKETE 120


>Q8DUZ8.1 Q8DUZ8_STRMU Putative transcriptional regulator
          Length = 127

 Score =  104 bits (259), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 77/115 (66%), Gaps = 3/115 (2%)

Query: 1   MKIGELAERTGVSIRSLRYYERQGLITPLRKANGYREYSALAVETVETIKLYLNLGLSTE 60
           M+IGE+++ T VS+RSLRYYE +GLI P R  NGYR+Y  L +E ++T+KLY +LGL+T 
Sbjct: 1   MRIGEVSKLTNVSMRSLRYYEEKGLIHPERLENGYRDYDKLTLERIKTLKLYFDLGLTTA 60

Query: 61  EIAGFLNC---VLMKKEAFCAEVMPLYRSKLEDIERQLLQLNQIKSNLEERIASI 112
           E+   + C   V   K   C +V+ +Y  KL+++  Q+  L QI+S L+ER+  I
Sbjct: 61  EMQQVMGCDPFVFPYKNLMCKDVIMIYEDKLKEVSHQIQILQQIESRLKERLMKI 115


>C3DSS7.1 C3DSS7_BACTS Transcriptional regulator, MerR
          Length = 122

 Score =  102 bits (253), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/117 (41%), Positives = 82/117 (70%), Gaps = 3/117 (2%)

Query: 1   MKIGELAERTGVSIRSLRYYERQGLITPLRKANGYREYSALAVETVETIKLYLNLGLSTE 60
           M+IGEL+++TGVS RSLR+YE +GL+   R ANGYR++   AVE VE I++YL +GL+ E
Sbjct: 1   MRIGELSKKTGVSERSLRHYEEKGLLPSKRLANGYRDFDESAVEKVELIQMYLQIGLNLE 60

Query: 61  EIAGFLNCVLMKKEAF---CAEVMPLYRSKLEDIERQLLQLNQIKSNLEERIASIQQ 114
           E A  L C+ ++   +   C+ ++ LY  KL ++ +Q+  L+ I++NL++ ++ ++Q
Sbjct: 61  ETARMLRCLAIEPHLYDNPCSSILTLYEDKLNEVTKQISLLSNIQTNLQKHVSLLKQ 117


>C2VJD3.1 C2VJD3_BACCE Transcriptional regulator, MerR
          Length = 122

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 82/119 (68%), Gaps = 3/119 (2%)

Query: 1   MKIGELAERTGVSIRSLRYYERQGLITPLRKANGYREYSALAVETVETIKLYLNLGLSTE 60
           M+IGEL++ TGVS RSLR+YE +GL+   R  NGYR++   A+E VE I++YL LGL+ E
Sbjct: 1   MRIGELSKETGVSERSLRHYEEKGLLPSNRLTNGYRDFDKSAIEKVELIQMYLQLGLNLE 60

Query: 61  EIAGFLNCVLMKKEAF---CAEVMPLYRSKLEDIERQLLQLNQIKSNLEERIASIQQEQ 116
           E A  L C+ ++   +   C+ ++ LY  KL ++ RQ+  L+ I++NL++ ++ ++QE+
Sbjct: 61  ETARMLRCLEIEPHLYENPCSSILALYEDKLNEVTRQISLLSNIQTNLQKHVSLLKQEK 119


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.133    0.350 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 579,898,594
Number of extensions: 19620883
Number of successful extensions: 98321
Number of sequences better than 1.0e-05: 1627
Number of HSP's gapped: 99610
Number of HSP's successfully gapped: 1627
Length of query: 120
Length of database: 3,060,696,203
Length adjustment: 86
Effective length of query: 34
Effective length of database: 2,250,488,913
Effective search space: 76516623042
Effective search space used: 76516623042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)