BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0483.0001.p
         (112 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DHF2.1 B1DHF2_9BACL Thioredoxin domain                              120   3e-26
B3K9M1.1 B3K9M1_9BACI Thioredoxin domain                              115   1e-24
Q404E5.1 Q404E5_BRECH Thioredoxin                                     102   8e-21
C0Z9I0.1 C0Z9I0_BREBN Thioredoxin                                     102   1e-20
B3KEJ5.1 B3KEJ5_9BACI Thioredoxin                                     101   3e-20

>B1DHF2.1 B1DHF2_9BACL Thioredoxin domain
          Length = 105

 Score =  120 bits (302), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 50/96 (52%), Positives = 72/96 (75%)

Query: 12  TLRLRLREGGTVLVDYGAPWCPPCQTLLPILEELDEEYGSNVTILKVNCDVLPELAAEAG 71
           + R  +R  G  LV++GA WCPPC+ LLPIL+EL +E G  V+IL+V+CD  PE+A+E G
Sbjct: 10  SFRQAVRSSGATLVEFGAKWCPPCKVLLPILDELQQEEGERVSILQVDCDESPEIASEFG 69

Query: 72  VMGLPTVVVYNGGQPMEKLVGLRPKSAYQGVLDRFA 107
           VM +PTV+V++ G+P++K +GLRPK  YQ  + R+A
Sbjct: 70  VMSMPTVIVFHNGEPVDKYIGLRPKDVYQQAIARYA 105


>B3K9M1.1 B3K9M1_9BACI Thioredoxin domain
          Length = 106

 Score =  115 bits (289), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 70/99 (70%)

Query: 10  ADTLRLRLREGGTVLVDYGAPWCPPCQTLLPILEELDEEYGSNVTILKVNCDVLPELAAE 69
           A + +  + + G  LV++GA WCPPC+ LLPILEEL  E    + I +V+CD  PELAA+
Sbjct: 8   AGSFQSSINQNGVTLVEFGAAWCPPCKVLLPILEELSREEAGRLDIYQVDCDESPELAAQ 67

Query: 70  AGVMGLPTVVVYNGGQPMEKLVGLRPKSAYQGVLDRFAA 108
            G+M +PTV+V++ G+P +KL+GLRPKS YQ  L R+ +
Sbjct: 68  FGIMSMPTVIVFHNGEPADKLIGLRPKSVYQAALGRYVS 106


>Q404E5.1 Q404E5_BRECH Thioredoxin
          Length = 105

 Score =  102 bits (255), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 1/104 (0%)

Query: 2   MAVINTEHADTLRLRLREGGTVLVDYGAPWCPPCQTLLPILEELDEEYGSNVTILKVNCD 61
           MA++N    +     + +GGTVLVD+ APWC PC+ + P+LE++D E GS + I+KVN D
Sbjct: 1   MAIVNGTDQN-FSQEVEQGGTVLVDFWAPWCGPCKMIAPVLEQMDSEVGSKLKIVKVNVD 59

Query: 62  VLPELAAEAGVMGLPTVVVYNGGQPMEKLVGLRPKSAYQGVLDR 105
             P+ A   GVM +PT++V+  GQP++K++G +PK A    + +
Sbjct: 60  DNPDSAGRFGVMSIPTLIVFKDGQPVDKVIGFQPKEALMATVGK 103


>C0Z9I0.1 C0Z9I0_BREBN Thioredoxin
          Length = 105

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/104 (42%), Positives = 69/104 (66%), Gaps = 1/104 (0%)

Query: 2   MAVINTEHADTLRLRLREGGTVLVDYGAPWCPPCQTLLPILEELDEEYGSNVTILKVNCD 61
           MA++N    +     + +GGTVLVD+ APWC PC+ + P+LE++D E GS + I+KVN D
Sbjct: 1   MAIVNATDQN-FSQEVEQGGTVLVDFWAPWCGPCKMIAPVLEQIDGEVGSQLKIVKVNVD 59

Query: 62  VLPELAAEAGVMGLPTVVVYNGGQPMEKLVGLRPKSAYQGVLDR 105
             P+ A   GVM +PT++V+  GQP++K++G +PK A    + +
Sbjct: 60  DNPDSAGRFGVMSIPTLIVFKDGQPVDKVIGFQPKEALMATVGK 103


>B3KEJ5.1 B3KEJ5_9BACI Thioredoxin
          Length = 105

 Score =  101 bits (251), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 69/105 (65%), Gaps = 3/105 (2%)

Query: 2   MAVINTEHADTLRLRLREG-GTVLVDYGAPWCPPCQTLLPILEELDEEYGSNVTILKVNC 60
           MA++N    D   +   EG GTV+VD+ APWC PC+ L PIL+EL  E G +V I KVN 
Sbjct: 1   MAIVNV--TDQTFVNEVEGQGTVVVDFWAPWCGPCKMLAPILDELSSELGDDVKIAKVNV 58

Query: 61  DVLPELAAEAGVMGLPTVVVYNGGQPMEKLVGLRPKSAYQGVLDR 105
           D  PE AA  GVM +PT++ +  GQP++K+VGL  K A +G++ +
Sbjct: 59  DENPESAARFGVMSIPTMIFFKDGQPVDKVVGLNSKEALKGIIAK 103


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 706,503,671
Number of extensions: 28165946
Number of successful extensions: 84332
Number of sequences better than 1.0e-05: 3431
Number of HSP's gapped: 85341
Number of HSP's successfully gapped: 3434
Length of query: 112
Length of database: 3,060,696,203
Length adjustment: 79
Effective length of query: 33
Effective length of database: 2,316,436,018
Effective search space: 76442388594
Effective search space used: 76442388594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)