BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0021.p (409 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DEZ8.1 B1DEZ8_9BACL Aminotransferase class V 544 e-153 C0Z928.1 C0Z928_BREBN Purine catabolism protein 524 e-147 B4AG38.1 B4AG38_BACPU Purine catabolism protein PucG EC=2.-.-.- 513 e-143 A8FH44.1 A8FH44_BACP2 Aminotransferase 511 e-143 O32148.1 PUCG_BACSU Purine catabolism protein pucG EC=2.-.-.- 501 e-140 >B1DEZ8.1 B1DEZ8_9BACL Aminotransferase class V Length = 413 Score = 544 bits (1401), Expect = e-153, Method: Compositional matrix adjust. Identities = 270/411 (65%), Positives = 305/411 (74%), Gaps = 5/411 (1%) Query: 3 MKRYEDLSPALRCIMTPGPVEVDPRVLRAMSFPVLGQFDPEFTDIMNETMGMLRELFATG 62 MKRY +L+P+ R IMTPGPVEVDPRVLRA+S+P+LGQFDPEFT MN+TM MLR LF T Sbjct: 1 MKRYAELAPSERTIMTPGPVEVDPRVLRALSYPILGQFDPEFTSYMNDTMEMLRSLFRTT 60 Query: 63 NQWAFPVDGTSRSGIEAVMVSLIAPGDRVLIPIFGRFGHLLHEIAERCGAEVFTIETAWG 122 N WAFP+DGTSRSGIEAV+ SLI PGD+VLIPI+GRFG+LL+EIAER GAEV IET WG Sbjct: 61 NHWAFPIDGTSRSGIEAVLTSLIEPGDKVLIPIYGRFGNLLYEIAERVGAEVAFIETEWG 120 Query: 123 SVFAPEEVIAAIRSFNPDVVAMVHGETSTGRVQPLAEIGRACRGHDALLIVDAVATIGGV 182 +VF P +VI+AI P +V MVHGETSTGR+QPLAEIG+ACR L +VDAVATIGGV Sbjct: 121 TVFDPGDVISAIHREKPALVLMVHGETSTGRMQPLAEIGKACRELGILFVVDAVATIGGV 180 Query: 183 PVETDAWMLDAVIGGTQKCLSVPSGMAPVTYNERAEAKLMKRKQVERGLRTG-----GAA 237 PV TD W +DAVIGGTQKCLSVPSGMAP+TYN+ A AK+ RK +ERGLRT Sbjct: 181 PVNTDEWFIDAVIGGTQKCLSVPSGMAPITYNDIAAAKINARKSIERGLRTTHEPTLNNT 240 Query: 238 RSELPVVGSNYFDLGMLQDYWSEQRLNHHTEMTSMLYAXXXXXXXXXXXXXXKRYARHVL 297 PV+ SNYFDL LQDYWS RLNHHTEMTSMLYA +R+ARH L Sbjct: 241 SVRRPVIQSNYFDLAQLQDYWSPARLNHHTEMTSMLYALREGLRLVLEEGLEERFARHRL 300 Query: 298 HERALTAGLAAMGLKLYGDPESKLTVVTCVLIPEGVDGESVRAMLLERFGIEIASSFGPL 357 +E AL GL AMGL LYGDP KL VVTC+ IP G+DGESVR MLL FGIEIASSFG L Sbjct: 301 NESALITGLDAMGLALYGDPSCKLPVVTCITIPGGIDGESVRGMLLNAFGIEIASSFGSL 360 Query: 358 KGLIWRIGTMGFSCRENNXXXXXXXXXXXXXXHGYAVPCGLGVQAALDVYE 408 KG IWRIGTMG+SCR N HG + G G+QAALDVY+ Sbjct: 361 KGKIWRIGTMGYSCRRQNVLQLLGALEAVLIRHGAKLHAGAGLQAALDVYD 411 >C0Z928.1 C0Z928_BREBN Purine catabolism protein Length = 414 Score = 524 bits (1350), Expect = e-147, Method: Compositional matrix adjust. Identities = 256/407 (62%), Positives = 300/407 (73%), Gaps = 1/407 (0%) Query: 3 MKRYEDLSPALRCIMTPGPVEVDPRVLRAMSFPVLGQFDPEFTDIMNETMGMLRELFATG 62 M Y++L+ + R IMTPGPVE +P VLR M P+LGQFDPEFTDIMNETM MLR+LF T Sbjct: 1 MCAYKELTTSQRTIMTPGPVEAEPSVLRVMGSPILGQFDPEFTDIMNETMEMLRKLFQTS 60 Query: 63 NQWAFPVDGTSRSGIEAVMVSLIAPGDRVLIPIFGRFGHLLHEIAERCGAEVFTIETAWG 122 N WAFP+DGTSR+GIEAV+ S+I PGDRVL+PI+GRFGHLL EI+ER GA+V T+ET WG Sbjct: 61 NHWAFPIDGTSRAGIEAVLCSIIEPGDRVLVPIYGRFGHLLTEISERYGADVITMETRWG 120 Query: 123 SVFAPEEVIAAIRSFNPDVVAMVHGETSTGRVQPLAEIGRACRGHDALLIVDAVATIGGV 182 SVF P++VIA I P +VAMVHGETSTG VQPL EIG ACR D L +VDAVA+IGG Sbjct: 121 SVFEPKDVIAEIERVQPKIVAMVHGETSTGCVQPLKEIGEACRRMDVLFVVDAVASIGGT 180 Query: 183 PVETDAWMLDAVIGGTQKCLSVPSGMAPVTYNERAEAKLMKRKQVERGLRTGGAARS-EL 241 V+ D W +DA IGGTQKCLSVPSGMAP+T+N R E L++RK++ERGL A +S + Sbjct: 181 EVKVDDWYIDACIGGTQKCLSVPSGMAPITFNSRIEELLLQRKKIERGLADPSAPKSAQT 240 Query: 242 PVVGSNYFDLGMLQDYWSEQRLNHHTEMTSMLYAXXXXXXXXXXXXXXKRYARHVLHERA 301 + SNYFDL L DYW RLNHHTE T+MLYA R+ARH LHE+A Sbjct: 241 RTIRSNYFDLSQLMDYWGPARLNHHTEATTMLYALREGVRIALTEGLEARFARHRLHEQA 300 Query: 302 LTAGLAAMGLKLYGDPESKLTVVTCVLIPEGVDGESVRAMLLERFGIEIASSFGPLKGLI 361 L AG+ AMGL+LYGDP KL VVTC+ IP+G+DGESVRAMLLE F IEIASSFGPLKG I Sbjct: 301 LVAGVLAMGLQLYGDPACKLPVVTCIKIPDGLDGESVRAMLLEDFHIEIASSFGPLKGTI 360 Query: 362 WRIGTMGFSCRENNXXXXXXXXXXXXXXHGYAVPCGLGVQAALDVYE 408 WRIGTMG+SCR+ N HG V G VQAALD+Y+ Sbjct: 361 WRIGTMGYSCRKKNILHVLGALEAVLIRHGARVHAGRAVQAALDIYD 407 >B4AG38.1 B4AG38_BACPU Purine catabolism protein PucG EC=2.-.-.- Length = 417 Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust. Identities = 243/408 (59%), Positives = 297/408 (72%), Gaps = 2/408 (0%) Query: 3 MKRYEDLSPALRCIMTPGPVEVDPRVLRAMSFPVLGQFDPEFTDIMNETMGMLRELFATG 62 M ++L R IMTPGPVEVDPRVLR MS P+LGQFDP FT IMNETM +LR LF T Sbjct: 7 MDNVKELQIPSRTIMTPGPVEVDPRVLRVMSTPILGQFDPAFTHIMNETMTLLRSLFQTE 66 Query: 63 NQWAFPVDGTSRSGIEAVMVSLIAPGDRVLIPIFGRFGHLLHEIAERCGAEVFTIETAWG 122 N+WAFP+DGTSRSG+EAV+ S+I PGD +L+P+FGRFGHLL EI +R GAEV T+E WG Sbjct: 67 NEWAFPIDGTSRSGLEAVLASVIEPGDSMLVPVFGRFGHLLIEIGQRYGAEVHTMECEWG 126 Query: 123 SVFAPEEVIAAIRSFNPDVVAMVHGETSTGRVQPLAEIGRACRGHDALLIVDAVATIGGV 182 +VF P ++I ++ P +VAMVHGETSTGR+QPL +IG ACR DAL IVDAVATIGGV Sbjct: 127 TVFDPSDIIQEMKQVKPKIVAMVHGETSTGRLQPLEQIGEACRALDALFIVDAVATIGGV 186 Query: 183 PVETDAWMLDAVIGGTQKCLSVPSGMAPVTYNERAEAKLMKRKQVERGLRTGGAARSELP 242 V+ D W +DA IGGTQKCLSVPSGM+P+TYN+R A + RK+VE+G+ T + ++ Sbjct: 187 QVKVDEWKIDAAIGGTQKCLSVPSGMSPITYNDRVAAVVESRKKVEKGIATQDELQEQMD 246 Query: 243 V--VGSNYFDLGMLQDYWSEQRLNHHTEMTSMLYAXXXXXXXXXXXXXXKRYARHVLHER 300 + + SNYFDL LQDYWS +RLNHHTE T+MLYA +R+ RH HE+ Sbjct: 247 ISPIKSNYFDLSQLQDYWSPRRLNHHTEATTMLYALREGVRVVLEEGLSERFQRHAFHEK 306 Query: 301 ALTAGLAAMGLKLYGDPESKLTVVTCVLIPEGVDGESVRAMLLERFGIEIASSFGPLKGL 360 AL GL AMG +L+GDP K+ VVTC+ IP G+DGE+VRA LL+ FGIEIASSFGPL G Sbjct: 307 ALMKGLEAMGFELFGDPHCKMPVVTCIEIPSGMDGEAVRADLLKHFGIEIASSFGPLAGR 366 Query: 361 IWRIGTMGFSCRENNXXXXXXXXXXXXXXHGYAVPCGLGVQAALDVYE 408 IWRIGTMG+SCR+ N HG ++ CG G+QAAL +YE Sbjct: 367 IWRIGTMGYSCRKENVLFVLAGLEAILIKHGASIHCGAGLQAALSIYE 414 >A8FH44.1 A8FH44_BACP2 Aminotransferase Length = 417 Score = 511 bits (1315), Expect = e-143, Method: Compositional matrix adjust. Identities = 241/408 (59%), Positives = 297/408 (72%), Gaps = 2/408 (0%) Query: 3 MKRYEDLSPALRCIMTPGPVEVDPRVLRAMSFPVLGQFDPEFTDIMNETMGMLRELFATG 62 M ++L R IMTPGPVEVDPRVLR MS P+LGQFDP FT IMNETM +LR LF T Sbjct: 7 MDNVKELQIPSRTIMTPGPVEVDPRVLRVMSTPILGQFDPAFTQIMNETMTLLRSLFQTE 66 Query: 63 NQWAFPVDGTSRSGIEAVMVSLIAPGDRVLIPIFGRFGHLLHEIAERCGAEVFTIETAWG 122 N+WAFP+DGTSRSG+EAV+ S+I PGD +L+P+FGRFGHLL EI +R GA+V T+E WG Sbjct: 67 NEWAFPIDGTSRSGLEAVLASVIEPGDSMLVPVFGRFGHLLIEIGQRYGADVHTMECEWG 126 Query: 123 SVFAPEEVIAAIRSFNPDVVAMVHGETSTGRVQPLAEIGRACRGHDALLIVDAVATIGGV 182 +VF P ++I ++ P +VAMVHGETSTGR+QPL +IG ACR DAL IVDAVATIGG Sbjct: 127 TVFDPSDIIQEMKQVRPKIVAMVHGETSTGRLQPLEQIGEACRELDALFIVDAVATIGGT 186 Query: 183 PVETDAWMLDAVIGGTQKCLSVPSGMAPVTYNERAEAKLMKRKQVERGLRTGGAARSELP 242 V+ D W +DA IGGTQKCLSVPSGM+P+TYN+R A + RK+VE+G+ T + ++ Sbjct: 187 QVKVDEWKIDAAIGGTQKCLSVPSGMSPITYNDRVAAVVESRKKVEKGIATQDELQEQMD 246 Query: 243 V--VGSNYFDLGMLQDYWSEQRLNHHTEMTSMLYAXXXXXXXXXXXXXXKRYARHVLHER 300 + + SNYFDL LQDYWS +RLNHHTE T+MLYA +R+ RH HE+ Sbjct: 247 ISPIKSNYFDLSQLQDYWSPRRLNHHTEATTMLYALREGVRVVLEEGLSERFKRHAYHEK 306 Query: 301 ALTAGLAAMGLKLYGDPESKLTVVTCVLIPEGVDGESVRAMLLERFGIEIASSFGPLKGL 360 AL GL AMGL+L+GDP K+ VVTC+ IP G+DGE+VR+ LL+ FGIEIASSFGPL G Sbjct: 307 ALMKGLEAMGLELFGDPHCKMPVVTCIEIPSGIDGEAVRSDLLKHFGIEIASSFGPLAGR 366 Query: 361 IWRIGTMGFSCRENNXXXXXXXXXXXXXXHGYAVPCGLGVQAALDVYE 408 IWRIGTMG+SCR+ N HG ++ CG G+QAAL +YE Sbjct: 367 IWRIGTMGYSCRKENVLFVLAGLEAILIKHGASIHCGAGLQAALSIYE 414 >O32148.1 PUCG_BACSU Purine catabolism protein pucG EC=2.-.-.- Length = 416 Score = 501 bits (1291), Expect = e-140, Method: Compositional matrix adjust. Identities = 251/408 (61%), Positives = 289/408 (70%), Gaps = 2/408 (0%) Query: 3 MKRYEDLSPALRCIMTPGPVEVDPRVLRAMSFPVLGQFDPEFTDIMNETMGMLRELFATG 62 M +L LR IMTPGPVEVDPRVLR MS PV+GQFDP FT IMNETM MLRELF T Sbjct: 1 MSGRRELCTPLRTIMTPGPVEVDPRVLRVMSTPVVGQFDPAFTGIMNETMEMLRELFQTK 60 Query: 63 NQWAFPVDGTSRSGIEAVMVSLIAPGDRVLIPIFGRFGHLLHEIAERCGAEVFTIETAWG 122 N+WA+P+DGTSR+GIEAV+ S+I P D VLIPI+GRFG+LL EIAER GA V +E WG Sbjct: 61 NRWAYPIDGTSRAGIEAVLASVIEPEDDVLIPIYGRFGYLLTEIAERYGANVHMLECEWG 120 Query: 123 SVFAPEEVIAAIRSFNPDVVAMVHGETSTGRVQPLAEIGRACRGHDALLIVDAVATIGGV 182 +VF PE++I I+ P +VAMVHGETSTGR+ PL IG ACR DAL IVDAVATIGG Sbjct: 121 TVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVATIGGC 180 Query: 183 PVETDAWMLDAVIGGTQKCLSVPSGMAPVTYNERAEAKLMKRKQVERGLRTGG--AARSE 240 V+ D W +DA IGGTQKCLSVPSGMAP+TYNER + RK+VERG+ T AA S Sbjct: 181 EVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQADRAALSG 240 Query: 241 LPVVGSNYFDLGMLQDYWSEQRLNHHTEMTSMLYAXXXXXXXXXXXXXXKRYARHVLHER 300 + SNYFDL L+DYWSE+RLNHHTE T+MLYA R+ RH HE Sbjct: 241 NRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEA 300 Query: 301 ALTAGLAAMGLKLYGDPESKLTVVTCVLIPEGVDGESVRAMLLERFGIEIASSFGPLKGL 360 AL AG+ AMGL+L+GD K+ VVTCV IP G+DGESVR MLL +FGIEIASSFGPL G Sbjct: 301 ALAAGIKAMGLRLFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPLAGK 360 Query: 361 IWRIGTMGFSCRENNXXXXXXXXXXXXXXHGYAVPCGLGVQAALDVYE 408 IWRIGTMG+SCR+ N H + G +QAALDVYE Sbjct: 361 IWRIGTMGYSCRKENVLFVLAGLEAVLLRHNAGIEAGKALQAALDVYE 408 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,346,590,508 Number of extensions: 93101804 Number of successful extensions: 218129 Number of sequences better than 1.0e-05: 1579 Number of HSP's gapped: 215634 Number of HSP's successfully gapped: 1591 Length of query: 409 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 271 Effective length of database: 1,760,596,133 Effective search space: 477121552043 Effective search space used: 477121552043 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 132 (55.5 bits)