BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0018.p (464 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DF00.1 B1DF00_9BACL Allantoinase EC=3.5.2.5 558 e-157 C1P9Z9.1 C1P9Z9_BACCO Allantoinase 416 e-114 Q5WBJ6.1 ALLB_BACSK Allantoinase EC=3.5.2.5 387 e-105 C2DLU5.1 C2DLU5_ECOLX Allantoinase EC=3.5.2.5 383 e-104 C1HGH0.1 C1HGH0_9ESCH Allantoinase 383 e-104 >B1DF00.1 B1DF00_9BACL Allantoinase EC=3.5.2.5 Length = 466 Score = 558 bits (1437), Expect = e-157, Method: Compositional matrix adjust. Identities = 271/466 (58%), Positives = 333/466 (71%), Gaps = 2/466 (0%) Query: 1 MEEAYELIIRNGDVVLPGEVRKLDVGVQDGKIXXXXXXXXXXXXXXVIDAEGQYVLPGMI 60 M + Y+ IIRNG VVLP +LD+G+ GKI ++DAEG+YVLPGMI Sbjct: 1 MNQIYDRIIRNGQVVLPEGTYRLDIGIIGGKIATVSESLADSAADEILDAEGKYVLPGMI 60 Query: 61 DMHVHFNEPAFGHWEGFRSGSAALAAGGCTCYADMPLNGNPPTVNRAALQLKAEAASGNS 120 DMHVHFNEP FGHWEGF +GS+ALAAGGCT YADMPLNGNPPTV AL K E A GNS Sbjct: 61 DMHVHFNEPNFGHWEGFATGSSALAAGGCTTYADMPLNGNPPTVTPEALAFKRELAGGNS 120 Query: 121 AVDYMLWGGLVPGNXXXXXXXXXXXVTGFKAFISNPGGEGEGRFREVDDGTLFLGMQKXX 180 AVDY WGGLVPG V GFKAF+SNPGGEGEGRFREVDD TL+ GM+K Sbjct: 121 AVDYTFWGGLVPGKLDQLEKLAAQGVRGFKAFMSNPGGEGEGRFREVDDLTLYEGMKKIA 180 Query: 181 XXXXXXXXHAESEDITAMLSAGAVRSGRTGARDFAASRPAMAELEAVSRALLYSERTGCR 240 HAES+ IT++L+ A++ GRT AR F ASRP +AELEAV++A+L+SE+TGC Sbjct: 181 ALGGFVALHAESDAITSVLAEQAIQEGRTDARAFVASRPVIAELEAVNKAILFSEQTGCE 240 Query: 241 LHFVHISTAAAVEMIHAAKRRGLDVTAETCPHYLVLNEDSMEQLGPVAKCAPPLRSTQEQ 300 +HFVHIS+ AVE+I AK+RG+ +T ETCPHYL+L ++ M +GP AKCAPPLR +++ Sbjct: 241 VHFVHISSVEAVELIDRAKKRGIPLTVETCPHYLLLTDEDMADIGPAAKCAPPLRGKEQK 300 Query: 301 QELWKVLAEGRIDLIASDHSPCPPELKFDPGLTFFEAWGGISGAQSSLELMFHEGVHMRG 360 + LW++LAEG++D+IASDHSPCPPELKFD L+FF+AWGGI+GAQSSLELM EG RG Sbjct: 301 EGLWRLLAEGKLDVIASDHSPCPPELKFDESLSFFDAWGGIAGAQSSLELMLDEGFIKRG 360 Query: 361 LPVTQVSALLSGQPARRFGLDHRKGSIAPGLDADLVLLNPKAGYTLAAGDLLYRHKHSPY 420 +P+ ++ LLS PA+RFGL +KG I G DADLVL++ YTL L RHK SPY Sbjct: 361 IPLHKLVDLLSAGPAKRFGLYPQKGQIDVGADADLVLVDASRTYTLTEDQLWQRHKVSPY 420 Query: 421 IGMTLSCKVTTTVCRGNVVYTAEQGVVSADKGEWL--QIYNAQQAP 464 +G ++CKVT T+ RG VYT EQGV G+ L ++ QQ P Sbjct: 421 LGREIACKVTATLVRGIPVYTDEQGVNPVKHGQLLLKPVHTPQQTP 466 >C1P9Z9.1 C1P9Z9_BACCO Allantoinase Length = 465 Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust. Identities = 202/453 (44%), Positives = 284/453 (62%), Gaps = 3/453 (0%) Query: 5 YELIIRNGDVVLPGEVRKLDVGVQDGKIXXXXXXXXXXXXXXVIDAEGQYVLPGMIDMHV 64 Y+ +I+NG VV V+ D+ +Q+GKI V DA GQYV+PGM+D+HV Sbjct: 3 YDTLIKNGKVVFRNSVKIADLAIQNGKIAVIADKIEETAEQ-VYDASGQYVMPGMVDIHV 61 Query: 65 HFNEPAFGHWEGFRSGSAALAAGGCTCYADMPLNGNPPTVNRAALQLKAEAASGNSAVDY 124 H EP WEGF +G+ ALAAGG T Y DMPLN P T + AL+ K AA+ + VDY Sbjct: 62 HMCEPGRTEWEGFETGTKALAAGGTTTYVDMPLNALPATTTKDALEKKLAAAAEKNYVDY 121 Query: 125 MLWGGLVPGNXXXXXXXXXXXVTGFKAFISNPGGEGEGRFREVDDGTLFLGMQKXXXXXX 184 +GGLVPGN V +K F+++ G + G F+ VDD TL+ GM+K Sbjct: 122 AFYGGLVPGNLDHLKELSDCGVVAYKCFMASCGTDLPGDFKNVDDYTLYAGMKKLAELGH 181 Query: 185 XXXXHAESEDITAMLSAGAVRSGRTGARDFAASRPAMAELEAVSRALLYSERTGCRLHFV 244 HAE+ IT L+ ++ G+T D+ ++RP E++A+ RAL ++++TGC+LHFV Sbjct: 182 ILLIHAENAAITDGLAEEMIKQGKTSPADYVSTRPVFTEVDAIKRALYFAKQTGCKLHFV 241 Query: 245 HISTAAAVEMIHAAKRRGLDVTAETCPHYLVLNEDSMEQLGPVAKCAPPLRSTQEQQELW 304 H+S+A VE I A+ G DVT E+CPHY + ++GP+AKC+PPLRS EQ++LW Sbjct: 242 HVSSAEGVEEITKARNEGQDVTLESCPHYFTITTAQFAEIGPLAKCSPPLRSEAEQEKLW 301 Query: 305 KVLAEGRIDLIASDHSPCPPELKFDPGLTFFEAWGGISGAQSSLELMFHEGVHMRGLPVT 364 +VL +G+ID++ SDHSPCPP +K FE WGGI+G Q +++LMF E V R +P+T Sbjct: 302 EVLKQGKIDMLTSDHSPCPPVMKDSETGNIFEVWGGITGCQHNVDLMFDEAVKKRSIPIT 361 Query: 365 QVSALLSGQPARRFGLDHRKGSIAPGLDADLVLLNPKAGYTLAAGDLLYRHKHSPYIGMT 424 Q + +++ PA RFGL KG IA DADL+ L+P YT++A DL YRHKHSPYIG Sbjct: 362 QFTRMIATNPAERFGL-KSKGEIALAKDADLLFLDPDRPYTVSAEDLYYRHKHSPYIGRK 420 Query: 425 LSCKVTTTVCRGNVVYTAEQGVVSADK-GEWLQ 456 + C+VT T RG +V+ + G + + G+W++ Sbjct: 421 IDCRVTKTFVRGQLVFDLDGGGIKGEPVGKWIR 453 >Q5WBJ6.1 ALLB_BACSK Allantoinase EC=3.5.2.5 Length = 448 Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust. Identities = 207/453 (45%), Positives = 270/453 (59%), Gaps = 7/453 (1%) Query: 6 ELIIRNGDVVLPGEVRKLDVGVQDGKIXXXXXXXXXXXXXXVIDAEGQYVLPGMIDMHVH 65 +L I G VVLP V + DVG+Q GKI +++A GQYV PG +D HVH Sbjct: 3 DLCITGGRVVLPSGVEETDVGIQAGKIARIGPINKKEARC-IMNANGQYVFPGAVDTHVH 61 Query: 66 FNEPAFGHWEGFRSGSAALAAGGCTCYADMPLNGNPPTVNRAALQLKAEAASGNSAVDYM 125 F+EP WEGF +GS +LAAGG T Y +MPLN P T NRA LQ K EAA G + VDY Sbjct: 62 FSEPGRTEWEGFFTGSRSLAAGGTTTYVEMPLNALPATTNRANLQRKLEAAKGQNYVDYS 121 Query: 126 LWGGLVPGNXXXXXXXXXXXVTGFKAFISNPGGEGEGRFREVDDGTLFLGMQKXXXXXXX 185 +GGLVP N V FK F+S G + G FR VD L GM+ Sbjct: 122 FYGGLVPTNLHELADLSASGVVAFKCFLSPCGSDIPGDFRNVDLNGLRAGMRLLAEKGQL 181 Query: 186 XXXHAESEDITAMLSAGAVRSGRTGARDFAASRPAMAELEAVSRALLYSERTGCRLHFVH 245 HAE + + L A + GA + ASRP AE++AV L + TGCR+HFVH Sbjct: 182 LCVHAEDPSMISQLEAKLLSP--VGADAYVASRPVEAEVKAVCDTLAAARETGCRIHFVH 239 Query: 246 ISTAAAVEMIHAAKRRGLDVTAETCPHYLVLNEDSMEQLGPVAKCAPPLRSTQEQQELWK 305 IS+AAA+E I AK G+DVT E+CPHY +L+ + + +LGP+AKC PPLR QEQ +LW Sbjct: 240 ISSAAAIEAIERAKEEGVDVTVESCPHYFLLSAEELAELGPLAKCQPPLRPKQEQAKLWA 299 Query: 306 VLAEGRIDLIASDHSPCPPELKFDPGLTFFEAWGGISGAQSSLELMFHEGVHMRGLPVTQ 365 L +G+ID +ASDHSPC P+LK F AWGGISG Q+++++MF V RG+P Q Sbjct: 300 CLLDGQIDWLASDHSPCTPDLKDG---DFLTAWGGISGCQNNIDIMFDAAVKRRGMPPEQ 356 Query: 366 VSALLSGQPARRFGLDHRKGSIAPGLDADLVLLNPKAGYTLAAGDLLYRHKHSPYIGMTL 425 ++ L++ PA+R L KG IA G DAD ++ + YTL L Y++KHSPY+G T+ Sbjct: 357 LARLIATNPAKRMNL-REKGEIAIGKDADFAFVDDRQSYTLTKEQLYYKNKHSPYVGRTI 415 Query: 426 SCKVTTTVCRGNVVYTAEQGVVSADKGEWLQIY 458 CKV + RG +YT E+G++ GE L I+ Sbjct: 416 GCKVRRVLLRGQTIYTEEKGIIGKPSGELLHIH 448 >C2DLU5.1 C2DLU5_ECOLX Allantoinase EC=3.5.2.5 Length = 453 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/453 (42%), Positives = 265/453 (58%), Gaps = 7/453 (1%) Query: 4 AYELIIRNGDVVLPGEVRKLDVGVQDGKIXXXXXXXXXXXXXXVIDAEGQYVLPGMIDMH 63 +++LII+NG V+L E R +D+ V+DGKI V+DA G V PGM+D H Sbjct: 2 SFDLIIKNGTVILENEARVVDIAVKDGKIAAIGQDLGDAKD--VMDASGLVVSPGMVDAH 59 Query: 64 VHFNEPAFGHWEGFRSGSAALAAGGCTCYADMPLNGNPPTVNRAALQLKAEAASGNSAVD 123 H +EP HWEG+ +G+ A A GG T +MPLN P TV+RA+++LK +AA G +D Sbjct: 60 THISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTID 119 Query: 124 YMLWGGLVPGNXXXXXXXXXXXVTGFKAFISNPGGEG-EGRFREVDDGTLFLGMQKXXXX 182 GGLV N V GFK F++ G G + FR+V+D F G QK Sbjct: 120 AAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGEL 179 Query: 183 XXXXXXHAESEDITAMLSAGAVRSGRTGARDFAASRPAMAELEAVSRALLYSERTGCRLH 242 H E+ I L A R GR A D+ ASRP E+EA+ R L ++ GCRLH Sbjct: 180 GQPVLVHCENALICDALGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLH 239 Query: 243 FVHISTAAAVEMIHAAKRRGLDVTAETCPHYLVLNEDSMEQLGPVAKCAPPLRSTQEQQE 302 H+S+ VE + A++ G DVT E+CPHY VL+ D E++G +AKC+PP+R + Q+ Sbjct: 240 VCHVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKG 299 Query: 303 LWKVLAEGRIDLIASDHSPCPPELKFDPGLTFFEAWGGISGAQSSLELMFHEGVHMRGLP 362 +W+ L G ID + SDHSPCPPE+K +AWGGI+G QS +++MF E V RG+ Sbjct: 300 MWEKLFNGEIDCLVSDHSPCPPEMK---AGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMS 356 Query: 363 VTQVSALLSGQPARRFGLDHRKGSIAPGLDADLVLLNPKAGYTLAAGDLLYRHKHSPYIG 422 + L++ A FGL +KG IAPG DAD V + P + Y L DL YRHK SPY+G Sbjct: 357 LPMFGKLMATNAADIFGL-QQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVG 415 Query: 423 MTLSCKVTTTVCRGNVVYTAEQGVVSADKGEWL 455 T+ ++T T+ RG+V+Y EQG A KG+++ Sbjct: 416 RTIGARITKTILRGDVIYDIEQGFPVAPKGQFI 448 >C1HGH0.1 C1HGH0_9ESCH Allantoinase Length = 453 Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust. Identities = 193/453 (42%), Positives = 265/453 (58%), Gaps = 7/453 (1%) Query: 4 AYELIIRNGDVVLPGEVRKLDVGVQDGKIXXXXXXXXXXXXXXVIDAEGQYVLPGMIDMH 63 +++LII+NG V+L E R +D+ V+DGKI V+DA G V PGM+D H Sbjct: 2 SFDLIIKNGTVILENEARVVDIAVKDGKIAAIGQDLGDAKD--VMDASGLVVSPGMVDAH 59 Query: 64 VHFNEPAFGHWEGFRSGSAALAAGGCTCYADMPLNGNPPTVNRAALQLKAEAASGNSAVD 123 H +EP HWEG+ +G+ A A GG T +MPLN P TV+RA+++LK +AA G +D Sbjct: 60 THISEPGRSHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDRASIELKFDAAKGKLTID 119 Query: 124 YMLWGGLVPGNXXXXXXXXXXXVTGFKAFISNPGGEG-EGRFREVDDGTLFLGMQKXXXX 182 GGLV N V GFK F++ G G + FR+V+D F G QK Sbjct: 120 AAQLGGLVSYNIDRLHELDEVGVVGFKCFVATCGDRGIDNDFRDVNDWQFFKGAQKLGEL 179 Query: 183 XXXXXXHAESEDITAMLSAGAVRSGRTGARDFAASRPAMAELEAVSRALLYSERTGCRLH 242 H E+ I L A R GR A D+ ASRP E+EA+ R L ++ GCRLH Sbjct: 180 GQPVLVHCENALICDALGEEAKREGRVTAHDYVASRPVFTEVEAIRRVLYLAKVAGCRLH 239 Query: 243 FVHISTAAAVEMIHAAKRRGLDVTAETCPHYLVLNEDSMEQLGPVAKCAPPLRSTQEQQE 302 H+S+ VE + A++ G DVT E+CPHY VL+ D E++G +AKC+PP+R + Q+ Sbjct: 240 VCHVSSPEGVEEVTRARQEGQDVTCESCPHYFVLDTDQFEEIGTLAKCSPPIRDLENQKG 299 Query: 303 LWKVLAEGRIDLIASDHSPCPPELKFDPGLTFFEAWGGISGAQSSLELMFHEGVHMRGLP 362 +W+ L G ID + SDHSPCPPE+K +AWGGI+G QS +++MF E V RG+ Sbjct: 300 MWEKLFNGEIDCLVSDHSPCPPEMK---AGNIMKAWGGIAGLQSCMDVMFDEAVQKRGMS 356 Query: 363 VTQVSALLSGQPARRFGLDHRKGSIAPGLDADLVLLNPKAGYTLAAGDLLYRHKHSPYIG 422 + L++ A FGL +KG IAPG DAD V + P + Y L DL YRHK SPY+G Sbjct: 357 LPMFGKLMATNAADIFGL-QQKGRIAPGKDADFVFIQPNSSYVLTNDDLEYRHKVSPYVG 415 Query: 423 MTLSCKVTTTVCRGNVVYTAEQGVVSADKGEWL 455 T+ ++T T+ RG+V+Y EQG A KG+++ Sbjct: 416 RTIGARITKTILRGDVIYDIEQGFPVAPKGQFI 448 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,641,071,932 Number of extensions: 102932160 Number of successful extensions: 224401 Number of sequences better than 1.0e-05: 2233 Number of HSP's gapped: 219402 Number of HSP's successfully gapped: 2596 Length of query: 464 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 325 Effective length of database: 1,751,175,118 Effective search space: 569131913350 Effective search space used: 569131913350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)