BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0017.p (159 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DF04.1 B1DF04_9BACL Putative uncharacterized protein 173 5e-42 A8VUS2.1 A8VUS2_9BACI Histidine kinase EC=2.7.13.3 167 3e-40 C1XF81.1 C1XF81_MEIRU OHCU decarboxylase 165 9e-40 Q9KEU1.1 Q9KEU1_BACHD BH0758 protein 162 8e-39 Q63T52.1 Q63T52_BURPS Putative uricase 150 5e-35 >B1DF04.1 B1DF04_9BACL Putative uncharacterized protein Length = 166 Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 86/156 (55%), Positives = 105/156 (67%) Query: 1 MSKEEFVANLGGIFEHSPWVAEGAYKHTPFQSAAQLHGMMLDTARNAEHSRVEALLRAHP 60 M KE F+ LG IFEHSPWVAE A+ PF+S +LH M+ ++ L HP Sbjct: 11 MPKESFIEALGAIFEHSPWVAESAFAARPFRSVDELHDAMVKVVVHSSDETKLKLFSEHP 70 Query: 61 DLATRLQVSPLSASEQQGAGLDRLSPEEFARLTELNRVYTEKFRFPFILAVRGKDKDDII 120 DLATR+++ S EQQGAGLDRL+PEEF T NR YT KF FPFILAVRGKDK DI+ Sbjct: 71 DLATRIKIGDYSTKEQQGAGLDRLTPEEFEVFTASNREYTGKFGFPFILAVRGKDKSDIL 130 Query: 121 QSIEARVNRSQEEEWEQALAEIGKITAFRLNDLIRE 156 ++EAR+ S EEE ++AL +I +IT FRL DLI E Sbjct: 131 AAMEARIGNSFEEEADEALWQIARITKFRLQDLITE 166 >A8VUS2.1 A8VUS2_9BACI Histidine kinase EC=2.7.13.3 Length = 175 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 79/155 (50%), Positives = 112/155 (72%), Gaps = 1/155 (0%) Query: 1 MSKEEFVANLGGIFEHSPWVAEGAYKHT-PFQSAAQLHGMMLDTARNAEHSRVEALLRAH 59 +S+E FVA +G +FEHSPWVA+ AY+ PF ++ +++ +L + +LLRAH Sbjct: 9 LSREAFVAQIGHVFEHSPWVADSAYEQAGPFHTSEEVYKQLLTAMHEGTEDQKLSLLRAH 68 Query: 60 PDLATRLQVSPLSASEQQGAGLDRLSPEEFARLTELNRVYTEKFRFPFILAVRGKDKDDI 119 PDL R+Q++ S +EQ+GAGL++LS +E+ L LN YTE+F FPFILAV+GK K+DI Sbjct: 69 PDLGGRIQMTDASVAEQKGAGLNQLSEKEYETLKRLNTHYTERFGFPFILAVKGKTKEDI 128 Query: 120 IQSIEARVNRSQEEEWEQALAEIGKITAFRLNDLI 154 I +IE+R+ S+EEE+E AL E+GKI FRLNDL+ Sbjct: 129 ISNIESRIENSREEEFETALNEVGKIAVFRLNDLL 163 >C1XF81.1 C1XF81_MEIRU OHCU decarboxylase Length = 163 Score = 165 bits (418), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 81/155 (52%), Positives = 107/155 (69%) Query: 1 MSKEEFVANLGGIFEHSPWVAEGAYKHTPFQSAAQLHGMMLDTARNAEHSRVEALLRAHP 60 +SKE FV +G +FEHSPW+AE A+ P+ S L ++ R A ALLRAHP Sbjct: 9 LSKEAFVEQVGWVFEHSPWIAEQAWAQRPWASLEALQQSLVQVVRQAPKEAQLALLRAHP 68 Query: 61 DLATRLQVSPLSASEQQGAGLDRLSPEEFARLTELNRVYTEKFRFPFILAVRGKDKDDII 120 DL +R +++P SA+EQ+GAGLD LSP EF R+ LNR YT+KF FPFILAVRGK K DI+ Sbjct: 69 DLGSRARMAPASAAEQKGAGLDALSPAEFERIQALNRAYTKKFGFPFILAVRGKTKADIL 128 Query: 121 QSIEARVNRSQEEEWEQALAEIGKITAFRLNDLIR 155 Q++E R++ + E++ AL E+ KI FRL DL+R Sbjct: 129 QAMEQRLHNPSDVEFQTALEEVFKIAYFRLTDLLR 163 >Q9KEU1.1 Q9KEU1_BACHD BH0758 protein Length = 177 Score = 162 bits (410), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 79/154 (51%), Positives = 104/154 (67%) Query: 1 MSKEEFVANLGGIFEHSPWVAEGAYKHTPFQSAAQLHGMMLDTARNAEHSRVEALLRAHP 60 + KE+FV +G IFEHSPWVAE A+ H PF SA ++ ML+ A+ ALLRAHP Sbjct: 18 LEKEDFVTKIGPIFEHSPWVAERAWAHRPFTSAENMYECMLEKVYEADKRLQLALLRAHP 77 Query: 61 DLATRLQVSPLSASEQQGAGLDRLSPEEFARLTELNRVYTEKFRFPFILAVRGKDKDDII 120 DL TRL++S S SEQQ AGL +L+ EEFA ELN+ Y + FRFPFI+AVRG+ K+ I Sbjct: 78 DLGTRLEISETSQSEQQRAGLSQLTEEEFAVFAELNKCYVDTFRFPFIMAVRGQTKNSIK 137 Query: 121 QSIEARVNRSQEEEWEQALAEIGKITAFRLNDLI 154 + + R+ +E+E + AL E+ KI FRL DL+ Sbjct: 138 EQMRKRLVNDEEQERKTALREVAKIAKFRLADLV 171 >Q63T52.1 Q63T52_BURPS Putative uricase Length = 174 Score = 150 bits (378), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 84/158 (53%), Positives = 102/158 (64%), Gaps = 4/158 (2%) Query: 1 MSKEEFVANLGGIFEHSPWVAEGAYKHTPFQSAAQLHGMMLDTARNAEHSRVEALLRAHP 60 MS + FVA L GIFEHSPWVAE A PF S LHG M D A +R AL+ AHP Sbjct: 15 MSTDAFVAALSGIFEHSPWVAEAAAAARPFGSIDALHGTMKDAVEAAGDARQLALINAHP 74 Query: 61 DLA----TRLQVSPLSASEQQGAGLDRLSPEEFARLTELNRVYTEKFRFPFILAVRGKDK 116 +LA R +++ S EQ GAGLDR + EF RL +LNR Y EKF FPFILAVRG D+ Sbjct: 75 ELAGKAAVRGELTAESTREQSGAGLDRCTQAEFDRLQQLNRAYREKFGFPFILAVRGFDR 134 Query: 117 DDIIQSIEARVNRSQEEEWEQALAEIGKITAFRLNDLI 154 II + EARV +++EE +LA+I +I FRL+DLI Sbjct: 135 HGIIANFEARVGHTRDEELRASLAQIYRIARFRLDDLI 172 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.131 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 842,238,958 Number of extensions: 28626047 Number of successful extensions: 103820 Number of sequences better than 1.0e-05: 289 Number of HSP's gapped: 103452 Number of HSP's successfully gapped: 289 Length of query: 159 Length of database: 3,060,696,203 Length adjustment: 120 Effective length of query: 39 Effective length of database: 1,930,174,403 Effective search space: 75276801717 Effective search space used: 75276801717 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)