BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0015.p (371 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DF09.1 B1DF09_9BACL Inner-membrane translocator 528 e-148 Q2RH40.1 Q2RH40_MOOTA Inner-membrane translocator 382 e-104 B0TBU8.1 B0TBU8_HELMI Abc transporter, permease protein, putative 345 6e-93 A4J6I9.1 A4J6I9_DESRM Inner-membrane translocator 342 3e-92 C1TLW7.1 C1TLW7_9BACT Nucleoside ABC transporter membrane protein 290 1e-76 >B1DF09.1 B1DF09_9BACL Inner-membrane translocator Length = 373 Score = 528 bits (1361), Expect = e-148, Method: Compositional matrix adjust. Identities = 255/372 (68%), Positives = 302/372 (81%), Gaps = 3/372 (0%) Query: 3 SKNASDAVLLNSVPAKSAKR---LPMRLEYDASRTRSPWWSPXXXXXXXXXXCAVFIAAN 59 SK + L P + +R L +R+E D SR SPWW C +FIAAN Sbjct: 2 SKQPVQSTLAIEQPDTATRRSKLLSLRIELDPSRKESPWWMTIVSILLALVFCGIFIAAN 61 Query: 60 GMSPVAVYDKMFRGAFGTSYGITETMVKAIPLLLCGLGIAVAYRISVWNIGAEGQLTVGA 119 GM+P+ VY KM GAFGTS+GITET+VK+IPLLLCG+G+A+AYRISVWNIGAEGQ GA Sbjct: 62 GMNPITVYSKMITGAFGTSFGITETLVKSIPLLLCGIGVAIAYRISVWNIGAEGQFLAGA 121 Query: 120 MAATAVTIYFPGLSSFWSIALMLVFGTAAGALWGLMTAIPRTHFGVNELITSLMLNYVAL 179 MAATAVT+YFP + ++ I M+VF G +WGL+TAIPRT+F VNELITSLMLNYVAL Sbjct: 122 MAATAVTVYFPNMPAYLVIPAMIVFSILGGGIWGLLTAIPRTYFQVNELITSLMLNYVAL 181 Query: 180 LALDYVVFGPWKDPKGFNFPGSPMFTAAQSLPVLGATRLHIGLIFGLVAVAIYYLMIRFT 239 LAL+Y VFGPWKDPKGFNFPG+P+FT AQSLPVLG TRLH+GL+F +V V +Y ++++T Sbjct: 182 LALNYFVFGPWKDPKGFNFPGTPVFTDAQSLPVLGDTRLHLGLVFAIVGVLLYAFLMKYT 241 Query: 240 RWGYELRLIGANPTAARYAGIHIKKHIMIVMLISGGLAGIAGMAEVSGVTHKLMQGISPG 299 RWGYELRLIGANP AA+ AGI I +HI++VMLISGG+AG+AGMAEVSGVTH+LM GISPG Sbjct: 242 RWGYELRLIGANPEAAKNAGIKISRHILLVMLISGGMAGLAGMAEVSGVTHRLMYGISPG 301 Query: 300 YGYTAIIVAWLAKLNPLGLIVTSVLFGGLIVGGYSVQTIGLPSSISEMLQGAILFFLIAG 359 YGYTAIIVAWLAKLNP+GL+++S LFGGLIVGG+SVQTIGLPSSIS M+QGAILFFLIAG Sbjct: 302 YGYTAIIVAWLAKLNPIGLVISSFLFGGLIVGGFSVQTIGLPSSISSMIQGAILFFLIAG 361 Query: 360 DMIHRFRIRRNA 371 M +FRIRRNA Sbjct: 362 SMASKFRIRRNA 373 >Q2RH40.1 Q2RH40_MOOTA Inner-membrane translocator Length = 373 Score = 382 bits (982), Expect = e-104, Method: Compositional matrix adjust. Identities = 182/316 (57%), Positives = 251/316 (79%) Query: 53 AVFIAANGMSPVAVYDKMFRGAFGTSYGITETMVKAIPLLLCGLGIAVAYRISVWNIGAE 112 A+F+AA G P+ VY M GA G+ YGI+ET+VKAIPL+L GLG++VA+R+ +WNIGAE Sbjct: 51 AIFLAATGFQPMKVYQSMLNGAVGSKYGISETIVKAIPLMLAGLGVSVAFRMLLWNIGAE 110 Query: 113 GQLTVGAMAATAVTIYFPGLSSFWSIALMLVFGTAAGALWGLMTAIPRTHFGVNELITSL 172 GQ +GA A+ V + FP L ++ + M + G GALWGL+ A+PR +GVNE+IT+L Sbjct: 111 GQFYMGAFGASWVALTFPHLPAYIMLPAMFLAGGLMGALWGLLPALPRAKWGVNEVITTL 170 Query: 173 MLNYVALLALDYVVFGPWKDPKGFNFPGSPMFTAAQSLPVLGATRLHIGLIFGLVAVAIY 232 MLNYVA+L +DY+V+GPWKDPKGFNFP + F+ A +LP + TR+H+GLIF LVA + Sbjct: 171 MLNYVAILWVDYLVYGPWKDPKGFNFPLTATFSDAAALPTIAGTRVHVGLIFALVAAVLL 230 Query: 233 YLMIRFTRWGYELRLIGANPTAARYAGIHIKKHIMIVMLISGGLAGIAGMAEVSGVTHKL 292 +++ TRWGYE+R+IG + AARYAG++I+++I++VML+SG LAG+AGM+EV+G+TH+L Sbjct: 231 AIILWHTRWGYEIRVIGESARAARYAGMNIERNIILVMLLSGALAGLAGMSEVAGITHRL 290 Query: 293 MQGISPGYGYTAIIVAWLAKLNPLGLIVTSVLFGGLIVGGYSVQTIGLPSSISEMLQGAI 352 GISPGYGYTAII+AWLAKL+P +I+ S+LFGGLIVGGYSVQT G+P++ MLQGAI Sbjct: 291 QHGISPGYGYTAIIIAWLAKLHPATIILVSILFGGLIVGGYSVQTSGVPAATVSMLQGAI 350 Query: 353 LFFLIAGDMIHRFRIR 368 LFF++ G+++ R+R+ Sbjct: 351 LFFVLGGEILTRYRLH 366 >B0TBU8.1 B0TBU8_HELMI Abc transporter, permease protein, putative Length = 371 Score = 345 bits (884), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 168/316 (53%), Positives = 236/316 (74%) Query: 55 FIAANGMSPVAVYDKMFRGAFGTSYGITETMVKAIPLLLCGLGIAVAYRISVWNIGAEGQ 114 FIAA G P+ VY M GAFG+SYGI+ET+VKAIPL+LC L +++A+R+ +WNIGAEGQ Sbjct: 51 FIAATGKEPLRVYSLMLEGAFGSSYGISETVVKAIPLMLCSLAVSIAFRMQLWNIGAEGQ 110 Query: 115 LTVGAMAATAVTIYFPGLSSFWSIALMLVFGTAAGALWGLMTAIPRTHFGVNELITSLML 174 L +GA A+ V + P ++ + M + G G LWGL+ AIPR + VNE IT+L++ Sbjct: 111 LYMGAFGASWVALNCPDWPAYVLLPAMAIMGMGMGGLWGLLPAIPRAYLKVNETITTLLM 170 Query: 175 NYVALLALDYVVFGPWKDPKGFNFPGSPMFTAAQSLPVLGATRLHIGLIFGLVAVAIYYL 234 NY+A+L +DY+V+GPWKDP GFNFP + F+ + LP G +R+HIGL L+ AI Y Sbjct: 171 NYIAILWVDYLVYGPWKDPNGFNFPITAPFSPSAILPAFGTSRIHIGLFLALITAAILYF 230 Query: 235 MIRFTRWGYELRLIGANPTAARYAGIHIKKHIMIVMLISGGLAGIAGMAEVSGVTHKLMQ 294 ++R TRWG+E+R+ G +P+AARYAG++ K+I++VM +SG LAG+AGM EVSG+T +L Sbjct: 231 VLRHTRWGFEIRVSGESPSAARYAGMNHVKNILLVMFVSGALAGLAGMTEVSGITQRLQH 290 Query: 295 GISPGYGYTAIIVAWLAKLNPLGLIVTSVLFGGLIVGGYSVQTIGLPSSISEMLQGAILF 354 GISPGYGY+AII+AWLA+L+P ++ S LFGGL+VGGYS+QT G P++ MLQGAILF Sbjct: 291 GISPGYGYSAIIIAWLARLHPWAIVFVSFLFGGLLVGGYSIQTSGFPAATVSMLQGAILF 350 Query: 355 FLIAGDMIHRFRIRRN 370 F++ G++ +R++ + Sbjct: 351 FVVGGEIFVNYRLKTS 366 >A4J6I9.1 A4J6I9_DESRM Inner-membrane translocator Length = 364 Score = 342 bits (878), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 169/324 (52%), Positives = 235/324 (72%), Gaps = 9/324 (2%) Query: 53 AVFIAANGM-SP--------VAVYDKMFRGAFGTSYGITETMVKAIPLLLCGLGIAVAYR 103 A+F+ NG+ SP AVY M GA G+SYG++ET+VKAIPL+LCGLG+++A+R Sbjct: 31 AIFLYINGLTSPKGITWGQVFAVYFGMLEGAVGSSYGLSETIVKAIPLMLCGLGVSIAFR 90 Query: 104 ISVWNIGAEGQLTVGAMAATAVTIYFPGLSSFWSIALMLVFGTAAGALWGLMTAIPRTHF 163 + +WNIGAEGQ +GA A V + F L ++ + LM++ G G +WGL+ IPR + Sbjct: 91 MQLWNIGAEGQFHMGAFGAAWVALNFSHLPAYVMLPLMVLAGIICGGIWGLLPGIPRAYL 150 Query: 164 GVNELITSLMLNYVALLALDYVVFGPWKDPKGFNFPGSPMFTAAQSLPVLGATRLHIGLI 223 GVNE IT+LMLNYVA+L ++Y+VFGPWKDP+G NFP S F + LP LG +R+H GL+ Sbjct: 151 GVNETITTLMLNYVAILWVNYLVFGPWKDPQGMNFPLSKPFEPSAILPTLGNSRVHFGLV 210 Query: 224 FGLVAVAIYYLMIRFTRWGYELRLIGANPTAARYAGIHIKKHIMIVMLISGGLAGIAGMA 283 F LV + +R +RWGYE+ +IG + AA YAG++I K+I++VM +SG +AG+AGMA Sbjct: 211 FALVIAVFLWFALRQSRWGYEVTVIGESSRAASYAGMNITKNILMVMFLSGAMAGLAGMA 270 Query: 284 EVSGVTHKLMQGISPGYGYTAIIVAWLAKLNPLGLIVTSVLFGGLIVGGYSVQTIGLPSS 343 EVS + ++ QGISPGYGYTAIIVAWL KLNP ++ S L G L VGGYSVQ+ G+P++ Sbjct: 271 EVSAIAQRMQQGISPGYGYTAIIVAWLGKLNPFAILFVSFLLGALQVGGYSVQSSGVPAA 330 Query: 344 ISEMLQGAILFFLIAGDMIHRFRI 367 I M+QGA+LFF++ G++ +R++I Sbjct: 331 IVFMIQGALLFFILGGEIFNRYKI 354 >C1TLW7.1 C1TLW7_9BACT Nucleoside ABC transporter membrane protein Length = 354 Score = 290 bits (743), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 148/348 (42%), Positives = 221/348 (63%), Gaps = 6/348 (1%) Query: 25 MRLEYDASRTRSPWW----SPXXXXXXXXXXCAVFIAANGMSPVAVYDKMFRGAFGTSYG 80 MR++ R P W P VF+ G+SP+ Y +M+ AFG SYG Sbjct: 1 MRIKRQ-KRIGQPLWLDLAIPVGGLLMAFLASGVFLVMMGVSPIEAYREMYYSAFGDSYG 59 Query: 81 ITETMVKAIPLLLCGLGIAVAYRISVWNIGAEGQLTVGAMAATAVTIYFPGLSSFWSIAL 140 ++E MVKAIPL + + + +++++ +WNIGAEGQ+ +GA+AATA YFP + + + Sbjct: 60 LSECMVKAIPLAMTAIALMLSFKMLIWNIGAEGQIFMGAIAATAAVRYFPVEGHWTMMTI 119 Query: 141 MLVFGTAAGALWGLMTAIPRTHFGVNELITSLMLNYVALLALDYVVFGPWKDPKGFNFPG 200 M + AG +W R + VNE+IT+LM+NY+A+ +DY V+GPW+DP FP Sbjct: 120 MGISAIIAGGIWAAFAGYLRARWNVNEIITTLMMNYIAIHLMDYFVYGPWRDPSSLGFPM 179 Query: 201 SPMFTAAQSLPVLGATRLHIGLIFGLVAVAIYYLMIRFTRWGYELRLIGANPTAARYAGI 260 + F L +G R+H G+ L + + + + + TRWGYE+R+IG NP AA +AGI Sbjct: 180 TAPFPETAKLVPIGWGRVHSGIFIALALILLAWWVFKMTRWGYEIRVIGENPKAATFAGI 239 Query: 261 HIKKHIMIVMLISGGLAGIAGMAEVSGVTHKLMQGISPGYGYTAIIVAWLAKLNPLGLIV 320 K++++VM ISG +AG+AGM+EV+G+ +L G S G+GYTAIIVAWL++LNPL + + Sbjct: 240 DYVKNVVVVMFISGAIAGLAGMSEVAGLQGRLQHGFSGGFGYTAIIVAWLSRLNPLAIAI 299 Query: 321 TSVLFGGLIVGGYSVQTI-GLPSSISEMLQGAILFFLIAGDMIHRFRI 367 S L GGL+VGG S+Q + GLP + + ++QG ILFF++AG+ R+RI Sbjct: 300 VSFLMGGLLVGGESLQIVMGLPIASTLVVQGCILFFILAGEFFRRYRI 347 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.326 0.140 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,103,623,554 Number of extensions: 85197653 Number of successful extensions: 347873 Number of sequences better than 1.0e-05: 2635 Number of HSP's gapped: 345354 Number of HSP's successfully gapped: 2645 Length of query: 371 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 234 Effective length of database: 1,770,017,148 Effective search space: 414184012632 Effective search space used: 414184012632 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)