BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0014.p (510 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DF10.1 B1DF10_9BACL ABC transporter related 687 0.0 Q2RH39.1 Q2RH39_MOOTA ABC transporter related 428 e-118 B9K731.1 B9K731_THENN Sugar ABC transporter, ATP-binding protein 407 e-111 B1B912.1 B1B912_CLOBO Ribose import ATP-binding protein RbsA EC=... 405 e-111 A4J6J0.1 A4J6J0_DESRM ABC transporter related 399 e-109 >B1DF10.1 B1DF10_9BACL ABC transporter related Length = 515 Score = 687 bits (1773), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/508 (66%), Positives = 393/508 (77%) Query: 1 MQDPSVEMRGIVKKFGSVTASNQVDFSANAGEIHALLGENGAGKSTVMSMLSGVYRADEG 60 ++ SVEM IVK+FGSV A++QVDF A AGEIHALLGENGAGKST+M MLSGVYR G Sbjct: 2 LETYSVEMHRIVKQFGSVVANDQVDFKAKAGEIHALLGENGAGKSTMMCMLSGVYRPTSG 61 Query: 61 EILLHGQPARIRSPKDAALLGVGMVFQNFRLVQSLTAAENIVLGEKSSFWRGSKWIKNKH 120 EI +HG+ A+IRSPKDA LG+GMVFQNFRLVQ+LTAAENI+LGEKSSFWRG W+K K Sbjct: 62 EIHIHGEKAKIRSPKDAMKLGIGMVFQNFRLVQTLTAAENIILGEKSSFWRGPGWMKKKQ 121 Query: 121 REIEALAEQFGLMFPVDRPVWQLSVGEQQRVEIVKTLYRGAEIIILDEPTSVLTPGEAEQ 180 EIEA+A +FGL FPVDRP+WQLSVGEQQRVEIVKTLYRGA++IILDEPTSVLTPGEAEQ Sbjct: 122 AEIEAIAVKFGLTFPVDRPIWQLSVGEQQRVEIVKTLYRGADLIILDEPTSVLTPGEAEQ 181 Query: 181 LFATLQVMKQAGKTVIMTTHKMKEVMASSDRISVMRKGKMIATLATSGTDELELARLMVG 240 LF TL MK GKTVI+TTHK+KEVMA SD IS+MRKG++ T+ + T+E ELARLMVG Sbjct: 182 LFVTLAQMKAEGKTVIITTHKLKEVMAISDSISIMRKGQLTHTMMKTETNERELARLMVG 241 Query: 241 XXXXXXXXXXXAAPGKPLLVVSNLEVTADHGRKALDGMSLQVCEGEIXXXXXXXXNGQKE 300 GKPLL+V L+V ADHGRKAL+ M+ QV EGE+ NGQKE Sbjct: 242 KELAVQKPLASRPKGKPLLIVDQLDVFADHGRKALNQMAFQVHEGEVVGVAGVAGNGQKE 301 Query: 301 LAEVLTGLRTWKNGDIIFDGGPVKSASVRGAIDSGISHVPENRMKSGLAGRLGSVDNLLF 360 LAEVLTGLR+W+ G I F+G P+K+ASVRGAI++ I+HVPENRMKSGLAG LG VDNLLF Sbjct: 302 LAEVLTGLRSWRKGSITFNGSPLKNASVRGAIEARIAHVPENRMKSGLAGSLGIVDNLLF 361 Query: 361 KSYRSSGHSKFGFLKAAKNRSWSQELVERFNVKTPALDTPVQQLSGGNQQKLLFAREVSH 420 KSYR+S S+FGFL++ NRSWSQ LVE+F+VKTP LD PV+QLSGGNQQKLLFAREV Sbjct: 362 KSYRTSDRSRFGFLRSRANRSWSQSLVEKFDVKTPGLDVPVRQLSGGNQQKLLFAREVEQ 421 Query: 421 QPKLMVAVHPTQGLDVGATAGVHELLMELRSRGSGVXXXXXXXXXXXXXXXRILVIYNGS 480 P MVAVHPTQGLDVGAT GVH LL E+R +G + RILVIYNG Sbjct: 422 DPLFMVAVHPTQGLDVGATEGVHRLLSEMRGQGKSILLISEDLDEVMQLSDRILVIYNGR 481 Query: 481 IIGESDHEHADREHIGLLMAGIRSKEAS 508 ++GE A RE IGL MAG+R + S Sbjct: 482 MVGELARGEATREQIGLYMAGVRDADDS 509 >Q2RH39.1 Q2RH39_MOOTA ABC transporter related Length = 505 Score = 428 bits (1101), Expect = e-118, Method: Compositional matrix adjust. Identities = 237/512 (46%), Positives = 314/512 (61%), Gaps = 10/512 (1%) Query: 1 MQDPSVEMRGIVKKFGSVTASNQVDFSANAGEIHALLGENGAGKSTVMSMLSGVYRADEG 60 M P VEMRGI K F V A+ V+ + +AGEIHALLGENGAGKST+MS+L+G+YR D G Sbjct: 1 MAVPLVEMRGITKVFPGVVANEGVNLAVHAGEIHALLGENGAGKSTLMSVLTGLYRPDGG 60 Query: 61 EILLHGQPARIRSPKDAALLGVGMVFQNFRLVQSLTAAENIVLGEKSSFWRGSKWIKNKH 120 EI L G+ RSP+DA G+GMV Q+FRLV T EN+ LG K G K N+ Sbjct: 61 EIYLDGRRVNFRSPRDAIEAGIGMVHQHFRLVAPFTVTENVALGLKG----GLKLNVNRL 116 Query: 121 R-EIEALAEQFGLMFPVDRPVWQLSVGEQQRVEIVKTLYRGAEIIILDEPTSVLTPGEAE 179 EI AL++++GL +WQLSVGEQQRVEI+K LYR ++ILDEPT+VLTP EA Sbjct: 117 AGEIAALSKEYGLQVDPQARIWQLSVGEQQRVEIIKLLYRKTRVLILDEPTAVLTPQEAR 176 Query: 180 QLFATLQVMKQAGKTVIMTTHKMKEVMASSDRISVMRKGKMIATLATSGTDELELARLMV 239 L+ TL+ M G VI THK++EVM ++D I+++R GK +AT+ S T E ELAR+MV Sbjct: 177 DLYRTLKRMAAQGCAVIFITHKLQEVMDAADTITILRGGKTVATVKKSETSEKELARMMV 236 Query: 240 GXXXXXXXXXXXAAPGKPLLVVSNLEVTADHGRKALDGMSLQVCEGEIXXXXXXXXNGQK 299 G A G+ +L + +L D G AL G++L+V GEI NGQ+ Sbjct: 237 GREIVWQGDKPVAKKGEKILEIRDLRALNDKGLPALRGINLEVFAGEILGIAGVAGNGQR 296 Query: 300 ELAEVLTGLRTWKNGDIIFDGGPVKSASVRGAIDSGISHVPENRMKSGLAGRLGSVDNLL 359 ELAEV+ GLR + G I G + I +G+ ++PE+R+ +GL LG+VDNLL Sbjct: 297 ELAEVIAGLRPCQGGSITVSGQELGQCDPCRVIQAGVGYIPEDRLGTGLIPNLGAVDNLL 356 Query: 360 FKSYRSSGHSKFG--FLKAAKNRSWSQELVERFNVKTPALDTPVQQLSGGNQQKLLFARE 417 K YR H ++G + R W+ ELV+ F VK LD PV+ +SGGN Q+LL ARE Sbjct: 357 LKEYR---HPRWGRTIMNRRAARQWAGELVQHFKVKMAGLDAPVKMMSGGNLQRLLLARE 413 Query: 418 VSHQPKLMVAVHPTQGLDVGATAGVHELLMELRSRGSGVXXXXXXXXXXXXXXXRILVIY 477 +S +P+L+VAV+P +GLDVGAT VH LL+E R+ G+ + RI V+Y Sbjct: 414 ISSRPRLLVAVYPARGLDVGATETVHRLLLEQRAAGTAILLISEDLEELFRLADRIAVMY 473 Query: 478 NGSIIGESDHEHADREHIGLLMAGIRSKEASA 509 G I+G E A E +GL+MAG + E A Sbjct: 474 EGQIMGLMPTEKASVEELGLMMAGAKRMEVGA 505 >B9K731.1 B9K731_THENN Sugar ABC transporter, ATP-binding protein Length = 507 Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust. Identities = 221/503 (43%), Positives = 309/503 (61%), Gaps = 3/503 (0%) Query: 5 SVEMRGIVKKFGSVTASNQVDFSANAGEIHALLGENGAGKSTVMSMLSGVYRADEGEILL 64 +V M+GIVK+F V A+N VD GEIHA++GENGAGK+T+M L G+ + DEGEI + Sbjct: 4 AVVMKGIVKRFPGVLANNHVDLFVEKGEIHAIVGENGAGKTTLMKQLYGLLKPDEGEIYI 63 Query: 65 HGQPARIRSPKDAALLGVGMVFQNFRLVQSLTAAENIVLGEKSSFWRGSKWIKNKHR-EI 123 +G P DA G+GMV Q+F LV++LTA EN+++G + +G + K R E+ Sbjct: 64 NGTKVEFSGPADAIKHGIGMVHQHFMLVENLTAYENVIIGMEPK--KGLILDRKKARNEV 121 Query: 124 EALAEQFGLMFPVDRPVWQLSVGEQQRVEIVKTLYRGAEIIILDEPTSVLTPGEAEQLFA 183 + L+E++GLM VD + + VG QQRVEI+KTLYRGA+I+ILDEPT+VLTP E E+LF Sbjct: 122 KKLSEEYGLMVDVDMKIEDMPVGLQQRVEIIKTLYRGADILILDEPTAVLTPQETEELFD 181 Query: 184 TLQVMKQAGKTVIMTTHKMKEVMASSDRISVMRKGKMIATLATSGTDELELARLMVGXXX 243 L+ +K+ GKT+I +HK+ EVMA SDRI+VMR+GK+ L TS T E+ARLMVG Sbjct: 182 ILRRLKKNGKTIIFISHKLNEVMAISDRITVMRQGKVTGNLITSQTTPQEIARLMVGRDV 241 Query: 244 XXXXXXXXAAPGKPLLVVSNLEVTADHGRKALDGMSLQVCEGEIXXXXXXXXNGQKELAE 303 PG+ LL V +L V + G A+ G+SL+V +GEI NGQ EL E Sbjct: 242 VLTVEKKPKKPGETLLEVKDLWVKDNRGLDAVKGISLEVKKGEIVGIAGVAGNGQSELVE 301 Query: 304 VLTGLRTWKNGDIIFDGGPVKSASVRGAIDSGISHVPENRMKSGLAGRLGSVDNLLFKSY 363 +TGLR + G ++F G + + D GI HVPE+R+K GL + N + + Sbjct: 302 AITGLRRVEKGKVLFKGKDITGYDPKRLRDLGIYHVPEDRLKRGLIVDFPAYFNTILGRH 361 Query: 364 RSSGHSKFGFLKAAKNRSWSQELVERFNVKTPALDTPVQQLSGGNQQKLLFAREVSHQPK 423 K GFL + +S+S++L E F+++ ++ SGGNQQK++ ARE+S P+ Sbjct: 362 MIEPFVKNGFLNFREIKSFSRKLFEEFDIRPRNIELLAGSFSGGNQQKIIVARELSFSPE 421 Query: 424 LMVAVHPTQGLDVGATAGVHELLMELRSRGSGVXXXXXXXXXXXXXXXRILVIYNGSIIG 483 L+V PT+GLDVGA +H+ L+ +R RG G+ RILV+Y G I+G Sbjct: 422 LLVVAQPTRGLDVGAIEFIHKTLVSMRDRGVGILLISMELDEIFSLSDRILVMYEGQIMG 481 Query: 484 ESDHEHADREHIGLLMAGIRSKE 506 E E RE +GL+MAG R +E Sbjct: 482 EVRPEETTREEVGLMMAGHRLEE 504 >B1B912.1 B1B912_CLOBO Ribose import ATP-binding protein RbsA EC=3.6.3.17 Length = 510 Score = 405 bits (1042), Expect = e-111, Method: Compositional matrix adjust. Identities = 209/507 (41%), Positives = 312/507 (61%), Gaps = 8/507 (1%) Query: 4 PSVEMRGIVKKFGSVTASNQVDFSANAGEIHALLGENGAGKSTVMSMLSGVYRADEGEIL 63 P ++M I K+FG V A+N ++ GE+HALLGENGAGKST+M+MLSGVY D G IL Sbjct: 7 PYIKMNNITKRFGKVIANNNINLEVYGGEVHALLGENGAGKSTLMNMLSGVYTPDGGSIL 66 Query: 64 LHGQPARIRSPKDAALLGVGMVFQNFRLVQSLTAAENIVLGEKSSFWRGSKWIKNKHREI 123 +HG+ + SPKDA GVGM++Q+F+LV+++TA ENI+ G+K + + KN + I Sbjct: 67 VHGKEVKFTSPKDAINSGVGMIYQHFKLVENMTAVENIIFGQKGKLFLNKR--KNIQK-I 123 Query: 124 EALAEQFGLMFPVDRPVWQLSVGEQQRVEIVKTLYRGAEIIILDEPTSVLTPGEAEQLFA 183 + + ++F L +++ V+++SVGE+Q +EI+K LYRGA I+ILDEPT+V TP E+E+LF Sbjct: 124 QNIIDKFNLEVELNKNVYEMSVGEKQNLEILKVLYRGANILILDEPTAVFTPQESEKLFK 183 Query: 184 TLQVMKQAGKTVIMTTHKMKEVMASSDRISVMRKGKMIATLATSGTDELELARLMVGXXX 243 ++ MK G VI THKM EVM +DRI+++RKG+ I T+ ++ EL LMVG Sbjct: 184 IIEKMKSEGCAVIFITHKMDEVMKMADRITILRKGETIKTVNKKDSNPKELTELMVGHSV 243 Query: 244 XXXXXXXXAAPGKPLLVVSNLEVTADHGRKALDGMSLQVCEGEIXXXXXXXXNGQKELAE 303 LL V NL+V + + + ++ V +GEI +GQKEL E Sbjct: 244 ELSIKTVPFKKENKLLEVKNLKVLNEDKLEIIKDVNFDVFKGEILGIAGVAGSGQKELCE 303 Query: 304 VLTGLRTWKNGDIIFDGGPVKSASVRGAIDSGI--SHVPENRMKSGLAGRLGSVDNLLFK 361 + G+ KNG+IIFDG + + R I GI S +PE+R+ GL + VDNLL K Sbjct: 304 AIAGIHKIKNGEIIFDGENIAGENPRDIITKGISMSFIPEDRLGMGLVASMDMVDNLLLK 363 Query: 362 SYRSSGHSKFGFLKAAKNRSWSQELVERFNVKTPALDTPVQQLSGGNQQKLLFAREVSHQ 421 +Y+S K F+K + ++E+V++ +KTP+++ P++ LSGGN QK+L RE+S Sbjct: 364 NYQS---QKGMFIKRKPIEARAKEMVKKLEIKTPSINYPIRYLSGGNIQKILLGRELSLN 420 Query: 422 PKLMVAVHPTQGLDVGATAGVHELLMELRSRGSGVXXXXXXXXXXXXXXXRILVIYNGSI 481 PKL++ +P +GLDV ++EL+ E + +GS V R++V+YNG I Sbjct: 421 PKLLIMAYPVRGLDVSTCYTIYELINEEKKKGSSVIYIGEDLDVLMQLCDRVMVMYNGEI 480 Query: 482 IGESDHEHADREHIGLLMAGIRSKEAS 508 G + E+ RE IG+LM G + +E + Sbjct: 481 TGILNAENTSREEIGMLMVGKKLEEEA 507 >A4J6J0.1 A4J6J0_DESRM ABC transporter related Length = 509 Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust. Identities = 213/505 (42%), Positives = 313/505 (61%), Gaps = 4/505 (0%) Query: 6 VEMRGIVKKFGSVTASNQVDFSANAGEIHALLGENGAGKSTVMSMLSGVYRADEGEILLH 65 VEM+ I K+F V A++ V+ GE+ ALLGENG+GKST+MS+LSG+YR DEGEI + Sbjct: 7 VEMKQITKRFPGVLANDGVNLQVKKGEVLALLGENGSGKSTLMSILSGLYRPDEGEIYIS 66 Query: 66 GQPARIRSPKDAALLGVGMVFQNFRLVQSLTAAENIVLGEK-SSFWRGSKWIKNKHREIE 124 G+ +SP++A G+GMV Q+F+ V + + AEN++LG K + F+ +K ++ +EIE Sbjct: 67 GKKQIFKSPREAIDAGIGMVHQHFKQVDTFSVAENVILGSKEAKFFINAKKVE---KEIE 123 Query: 125 ALAEQFGLMFPVDRPVWQLSVGEQQRVEIVKTLYRGAEIIILDEPTSVLTPGEAEQLFAT 184 ++ +GL VWQLSV E+QRVEIVK LYRG+++++LDEPT+VLTP EA +LF T Sbjct: 124 DISLGYGLHVDPTAKVWQLSVAEKQRVEIVKMLYRGSKLLVLDEPTAVLTPQEARELFQT 183 Query: 185 LQVMKQAGKTVIMTTHKMKEVMASSDRISVMRKGKMIATLATSGTDELELARLMVGXXXX 244 ++ M G+++I+ THK+ EVM SDR++++R G+ IAT +E ELARLM+G Sbjct: 184 VRQMTAKGQSIILITHKLNEVMEVSDRVTILRGGRSIATREKHEVNERELARLMMGQDIV 243 Query: 245 XXXXXXXAAPGKPLLVVSNLEVTADHGRKALDGMSLQVCEGEIXXXXXXXXNGQKELAEV 304 G+ +L + NL +D R + +SLQV GEI NG++ELAE Sbjct: 244 VPSQKKPGKFGQTVLKLDNLSAGSDSRRAGIKDISLQVRAGEIMGIAGIAGNGRRELAET 303 Query: 305 LTGLRTWKNGDIIFDGGPVKSASVRGAIDSGISHVPENRMKSGLAGRLGSVDNLLFKSYR 364 + GLR +G I + V + S ID G+S++PE+R+ +GL LG+V+NL+ K YR Sbjct: 304 IAGLRQVSSGKIYIEEKDVTNLSTLEVIDEGVSYIPEDRLGTGLVPNLGAVENLILKEYR 363 Query: 365 SSGHSKFGFLKAAKNRSWSQELVERFNVKTPALDTPVQQLSGGNQQKLLFAREVSHQPKL 424 G F+ K ++ ELV VK +D PV+ LSGGN Q+LL ARE++ PK+ Sbjct: 364 RPGLGSGPFINRNKANEYTNELVNEVGVKLTGMDAPVKMLSGGNLQRLLLARELACSPKV 423 Query: 425 MVAVHPTQGLDVGATAGVHELLMELRSRGSGVXXXXXXXXXXXXXXXRILVIYNGSIIGE 484 +VAV+P +GLD+ A +H++L+E RS+G+ + I V+Y GS++G Sbjct: 424 IVAVYPVRGLDIAAAEFIHKMLLEQRSKGAAIVLISEDLEELLKLSDNIGVLYKGSLVGI 483 Query: 485 SDHEHADREHIGLLMAGIRSKEASA 509 E A+ E IGL+M G +S E A Sbjct: 484 LPVEKAEPEVIGLMMLGAKSGEVMA 508 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,656,238,295 Number of extensions: 101306849 Number of successful extensions: 727176 Number of sequences better than 1.0e-05: 82709 Number of HSP's gapped: 594146 Number of HSP's successfully gapped: 90529 Length of query: 510 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 370 Effective length of database: 1,741,754,103 Effective search space: 644449018110 Effective search space used: 644449018110 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)