BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0013.p (375 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DF11.1 B1DF11_9BACL Basic membrane lipoprotein 559 e-157 B1DMP2.1 B1DMP2_9BACL Basic membrane lipoprotein 488 e-136 B0TBV1.1 B0TBV1_HELMI Membrane protein, bmp family 414 e-114 A4J6J1.1 A4J6J1_DESRM Basic membrane lipoprotein 404 e-111 Q2RH38.1 Q2RH38_MOOTA Basic membrane lipoprotein 403 e-110 >B1DF11.1 B1DF11_9BACL Basic membrane lipoprotein Length = 385 Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust. Identities = 258/328 (78%), Positives = 288/328 (87%) Query: 48 PRVAFVYIGPPGDGGYTYQHDQGRLYMEKELGIKADTVENVPESADAERIITELAQNHDI 107 PRVAFVYIGPPGDGG+T++HD GR YME++LGIKADTVENVPESADAER+ITELAQNHDI Sbjct: 58 PRVAFVYIGPPGDGGWTFEHDNGRKYMEEKLGIKADTVENVPESADAERVITELAQNHDI 117 Query: 108 VFTTSFGYMDYTLNVANKFPKVKFLHASGYKTAANMGTYFGKNYQGSYLAGIAAGKMTKK 167 +FTTSFGYMD TLNVA KFP VKF+H +GYKTA NM TYFGKNY+ SYL GIAAGKMTK Sbjct: 118 IFTTSFGYMDPTLNVAKKFPNVKFMHTAGYKTADNMSTYFGKNYEASYLTGIAAGKMTKS 177 Query: 168 NHLGYVGAFPISEVIYNLNAFTLGAQSVNPEVKVDVVWTNTWYDPATERQAAISLLDKGA 227 N +GYVGAFPI EVIYN+NAF LG QSVNP+ KVDVVW+NTWYDP ERQAAISLLDKGA Sbjct: 178 NVIGYVGAFPIPEVIYNINAFALGIQSVNPDAKVDVVWSNTWYDPTAERQAAISLLDKGA 237 Query: 228 DVLLAYQDSPATLQAAAERGAFAGGNDSDMGKYGPDHYLTNPVWNWGPYYVKAVQSVMDG 287 DVLLAYQDSPATLQAAAERGA AGGNDSDM +Y PD YLTNP WNWGPYY K VQSV+DG Sbjct: 238 DVLLAYQDSPATLQAAAERGALAGGNDSDMTRYAPDAYLTNPTWNWGPYYTKVVQSVIDG 297 Query: 288 TWKSEQYSGDMADGMIDIAPFGSKVPDDVKKLVEDAKAKIISGELDIFTGPISDNQGKVQ 347 TWKSEQ+SGDM DGM+ +AP G +PDDVKKLVEDAKAKIISGELD+F+GPI+D G + Sbjct: 298 TWKSEQFSGDMVDGMVGLAPLGPSIPDDVKKLVEDAKAKIISGELDVFSGPITDASGASK 357 Query: 348 VQEGQKLTLDEVLSMNWLAKGIEGTIPK 375 + GQ ++L+++L MNW KGIEGTIPK Sbjct: 358 QEAGQTMSLEQILEMNWFVKGIEGTIPK 385 >B1DMP2.1 B1DMP2_9BACL Basic membrane lipoprotein Length = 368 Score = 488 bits (1256), Expect = e-136, Method: Compositional matrix adjust. Identities = 225/329 (68%), Positives = 266/329 (80%) Query: 47 KPRVAFVYIGPPGDGGYTYQHDQGRLYMEKELGIKADTVENVPESADAERIITELAQNHD 106 KPRVAFVY+G PGDGG+TY+HDQGR ME+ELG+ A TVENVPE ADAER+ ELA+ +D Sbjct: 40 KPRVAFVYLGVPGDGGWTYEHDQGRKMMEEELGLTATTVENVPEGADAERVFEELAEKND 99 Query: 107 IVFTTSFGYMDYTLNVANKFPKVKFLHASGYKTAANMGTYFGKNYQGSYLAGIAAGKMTK 166 I+F TSFGYMD + VA K P VKFLHASGYKT+ N+GTY GK YQ +YL G+AAGKMTK Sbjct: 100 IIFGTSFGYMDAMVAVAKKHPDVKFLHASGYKTSDNLGTYLGKEYQSAYLVGMAAGKMTK 159 Query: 167 KNHLGYVGAFPISEVIYNLNAFTLGAQSVNPEVKVDVVWTNTWYDPATERQAAISLLDKG 226 NHLGYVGA+PI EVIY +NAF LG QSVNPE KVDVVW+NTW+DP ERQAA SLLDKG Sbjct: 160 NNHLGYVGAYPIPEVIYTINAFALGVQSVNPEAKVDVVWSNTWFDPTAERQAATSLLDKG 219 Query: 227 ADVLLAYQDSPATLQAAAERGAFAGGNDSDMGKYGPDHYLTNPVWNWGPYYVKAVQSVMD 286 DVL AYQDSPA++QAAAERG + GNDSDM KY PD+Y++NP WNWGPYYV+ V++VMD Sbjct: 220 VDVLAAYQDSPASIQAAAERGVWGIGNDSDMSKYAPDYYISNPKWNWGPYYVQTVKAVMD 279 Query: 287 GTWKSEQYSGDMADGMIDIAPFGSKVPDDVKKLVEDAKAKIISGELDIFTGPISDNQGKV 346 GTWKSE Y G M DG+ DIAPFG VP DVK L E K +I+ G D+F GPI+D G Sbjct: 280 GTWKSESYFGSMKDGITDIAPFGKNVPQDVKDLAEAKKKEILGGSFDVFNGPIADQSGTE 339 Query: 347 QVQEGQKLTLDEVLSMNWLAKGIEGTIPK 375 +V +G+++T+DE+L+MNW KGIEGTIP+ Sbjct: 340 KVPQGKEMTVDEILNMNWFVKGIEGTIPQ 368 >B0TBV1.1 B0TBV1_HELMI Membrane protein, bmp family Length = 373 Score = 414 bits (1065), Expect = e-114, Method: Compositional matrix adjust. Identities = 194/331 (58%), Positives = 244/331 (73%), Gaps = 2/331 (0%) Query: 47 KPRVAFVYIGPPGDGGYTYQHDQGRLYMEKEL-GIKADTVENVPESADAERIITELA-QN 104 K +VAFVY+GP GD G++Y HDQ R Y+EKE+ ++ VE+VPE ADAER++TELA + Sbjct: 43 KVKVAFVYVGPVGDAGWSYAHDQARKYLEKEMPNVETSVVESVPEGADAERVLTELATKG 102 Query: 105 HDIVFTTSFGYMDYTLNVANKFPKVKFLHASGYKTAANMGTYFGKNYQGSYLAGIAAGKM 164 + I+F TSFGYMDY + VA KFP V FLH SGYKTA N+GTYFG+ YQ YL+G+AAGK Sbjct: 103 NKIIFATSFGYMDYVIKVAQKFPDVTFLHCSGYKTAPNVGTYFGRIYQARYLSGLAAGKQ 162 Query: 165 TKKNHLGYVGAFPISEVIYNLNAFTLGAQSVNPEVKVDVVWTNTWYDPATERQAAISLLD 224 T+ N +GYV A PI EVI +NAFTLG + VNP V VVWTNTWYDPA E+ AA SLLD Sbjct: 163 TQSNVIGYVAAMPIPEVIRGINAFTLGVREVNPSAIVKVVWTNTWYDPAKEKDAAKSLLD 222 Query: 225 KGADVLLAYQDSPATLQAAAERGAFAGGNDSDMGKYGPDHYLTNPVWNWGPYYVKAVQSV 284 GADV+ +QD+PA +QAA E+G F G ++DM + P LT PVWNWGPYYVK V++V Sbjct: 223 AGADVIAQHQDTPAPMQAAEEKGKFGVGYNTDMSSFAPKAVLTGPVWNWGPYYVKTVKAV 282 Query: 285 MDGTWKSEQYSGDMADGMIDIAPFGSKVPDDVKKLVEDAKAKIISGELDIFTGPISDNQG 344 MD +WK EQY G M+D ++D+AP+G V DD K L+ K I+ GE D+FTGPI D G Sbjct: 283 MDKSWKPEQYWGPMSDNIVDLAPYGPMVSDDTKALIAKKKESIVKGEWDVFTGPIKDQSG 342 Query: 345 KVQVQEGQKLTLDEVLSMNWLAKGIEGTIPK 375 +V+VQEG K+T E+L NW +G++GTIPK Sbjct: 343 QVKVQEGTKMTDKEMLEFNWFVQGVDGTIPK 373 >A4J6J1.1 A4J6J1_DESRM Basic membrane lipoprotein Length = 368 Score = 404 bits (1038), Expect = e-111, Method: Compositional matrix adjust. Identities = 187/331 (56%), Positives = 247/331 (74%), Gaps = 2/331 (0%) Query: 47 KPRVAFVYIGPPGDGGYTYQHDQGRLYMEKEL-GIKADTVENVPESADAERIITELAQN- 104 K ++ F+Y+GP GDGG++Y HD GR Y+EKE+ G++ +E+VPE AD+ER++TEL + Sbjct: 38 KLKIGFIYVGPVGDGGWSYSHDAGRQYLEKEIPGLETTYIESVPEGADSERVLTELVEKG 97 Query: 105 HDIVFTTSFGYMDYTLNVANKFPKVKFLHASGYKTAANMGTYFGKNYQGSYLAGIAAGKM 164 + I+F TSFGYMD + VA K+P VKFLH SGYKTA N+GTYFG+ YQ YL G+ AG+ Sbjct: 98 NKIIFATSFGYMDSVIKVAQKYPDVKFLHCSGYKTAENVGTYFGRMYQARYLTGVLAGET 157 Query: 165 TKKNHLGYVGAFPISEVIYNLNAFTLGAQSVNPEVKVDVVWTNTWYDPATERQAAISLLD 224 TK N +GYV AFPI EVI +NAFTLG +SVNPE KV VVWTNTWYDPA E++A SLL+ Sbjct: 158 TKSNVIGYVAAFPIPEVIRGINAFTLGVRSVNPEAKVKVVWTNTWYDPAAEKEAGKSLLE 217 Query: 225 KGADVLLAYQDSPATLQAAAERGAFAGGNDSDMGKYGPDHYLTNPVWNWGPYYVKAVQSV 284 GADV+ +QD+P QAA E+G F G +SDM K P +T+ VWNWGPYYV V+++ Sbjct: 218 AGADVVTQHQDTPGPQQAAEEKGKFGIGYNSDMSKMAPKAVMTSAVWNWGPYYVDTVKAI 277 Query: 285 MDGTWKSEQYSGDMADGMIDIAPFGSKVPDDVKKLVEDAKAKIISGELDIFTGPISDNQG 344 GTWKS+QY G M+D ++D+AP+G V DD+KK+VE K +II G+ D+FTGPI D G Sbjct: 278 QAGTWKSDQYWGPMSDNIVDLAPYGPMVSDDIKKVVETKKQEIIEGKFDVFTGPIKDQAG 337 Query: 345 KVQVQEGQKLTLDEVLSMNWLAKGIEGTIPK 375 K +V GQK++ ++LS++W +G+EGTIPK Sbjct: 338 KERVAAGQKMSDADMLSLDWFVEGVEGTIPK 368 >Q2RH38.1 Q2RH38_MOOTA Basic membrane lipoprotein Length = 373 Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust. Identities = 199/331 (60%), Positives = 253/331 (76%), Gaps = 2/331 (0%) Query: 47 KPRVAFVYIGPPGDGGYTYQHDQGRLYMEKELG-IKADTVENVPESADAERIITELA-QN 104 K +VAFVY+GP GD G+++ HDQGR Y+ ++L ++ +ENVPE ADAER++TELA Q Sbjct: 43 KMKVAFVYVGPVGDAGWSWAHDQGRKYLAEKLPWVETTYMENVPEGADAERVLTELAEQG 102 Query: 105 HDIVFTTSFGYMDYTLNVANKFPKVKFLHASGYKTAANMGTYFGKNYQGSYLAGIAAGKM 164 + I+F TSFGYMDY +NVA K+P V F+H SGYKTA N+GTYFG + YL+G+ AGKM Sbjct: 103 NKIIFATSFGYMDYVINVAKKYPNVIFMHCSGYKTAENVGTYFGAMEEARYLSGMVAGKM 162 Query: 165 TKKNHLGYVGAFPISEVIYNLNAFTLGAQSVNPEVKVDVVWTNTWYDPATERQAAISLLD 224 TKKN LG+V A PI EVI +NAFTLGA+SVNP VKV VVWTNTWYDPA E+QAA+SLLD Sbjct: 163 TKKNVLGFVAAHPIPEVIRGINAFTLGARSVNPNVKVKVVWTNTWYDPAAEKQAALSLLD 222 Query: 225 KGADVLLAYQDSPATLQAAAERGAFAGGNDSDMGKYGPDHYLTNPVWNWGPYYVKAVQSV 284 GADV+ +QD+P QAA ERGA+ G DSDM ++ P+ LT+PVWNWGPYYVK V++V Sbjct: 223 AGADVIAQHQDTPGPQQAAQERGAYGIGYDSDMSQFAPNATLTSPVWNWGPYYVKIVEAV 282 Query: 285 MDGTWKSEQYSGDMADGMIDIAPFGSKVPDDVKKLVEDAKAKIISGELDIFTGPISDNQG 344 +GTWK EQY G M DG++D+APF VP DV+ LVE K +II G+ +F GPI D G Sbjct: 283 KNGTWKPEQYYGTMKDGIVDLAPFNKMVPQDVRDLVEKKKQEIIDGKFFVFQGPIKDQSG 342 Query: 345 KVQVQEGQKLTLDEVLSMNWLAKGIEGTIPK 375 K++VQEGQK++ +++L NW +G+EG IPK Sbjct: 343 KIRVQEGQKMSQEDILGFNWFVEGVEGEIPK 373 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,156,040,880 Number of extensions: 92727115 Number of successful extensions: 242899 Number of sequences better than 1.0e-05: 895 Number of HSP's gapped: 241523 Number of HSP's successfully gapped: 901 Length of query: 375 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 238 Effective length of database: 1,770,017,148 Effective search space: 421264081224 Effective search space used: 421264081224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)