BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0479.0011.p (536 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DF15.1 B1DF15_9BACL Transcriptional regulator, PucR family 532 e-149 C1B5B8.1 C1B5B8_RHOOB Putative CdaR family transcriptional regul... 135 1e-29 A8VR74.1 A8VR74_9BACI Transcriptional regulator, CdaR 133 4e-29 C4EPK2.1 C4EPK2_STRRS Purine catabolism regulator-like protein 131 2e-28 A6TWU1.1 A6TWU1_ALKMQ Transcriptional regulator, CdaR 127 3e-27 >B1DF15.1 B1DF15_9BACL Transcriptional regulator, PucR family Length = 528 Score = 532 bits (1371), Expect = e-149, Method: Compositional matrix adjust. Identities = 253/526 (48%), Positives = 372/526 (70%), Gaps = 2/526 (0%) Query: 13 MNLTVEEALSVYPLSEAKLIAGSKGKHRVIKSVNVMDAPDISDWIKEGEMLLTTAYLIKD 72 M+LTVE+AL+V+PLSE KL+AG G++R++KSVNVMDAPDI+DWIKEGEML TTAYLIKD Sbjct: 1 MHLTVEQALNVFPLSEGKLVAGKAGRNRIVKSVNVMDAPDITDWIKEGEMLFTTAYLIKD 60 Query: 73 SLEDASALLQTLNRRGSAGLGIKLGRFWDAVPEKLIAEAEKMNFPLIELPFQFTFSDQMN 132 +DA+ LL LN+RGS+GLGIKLGRFWDA+PE+LIA A ++ FPLIELP+QFTFSDQM+ Sbjct: 61 HPQDATELLVKLNQRGSSGLGIKLGRFWDAIPEQLIAFANELGFPLIELPYQFTFSDQMS 120 Query: 133 GLFRAELTRSTSVLQSIMEKQRKLMRFALRSGRSRPLFESVSEVIETPLAVVSARGDVVF 192 GLF+ EL R+T VLQ I +KQ +LMR AL++ LF+SV+++I P+A+V +RG +V+ Sbjct: 121 GLFKEELRRNTGVLQDIFDKQVRLMRMALKTDHINELFDSVADIIGFPMAIVGSRGQIVY 180 Query: 193 NNSDNAVPQLLEGWPWQSRNQRFRIGDKIGFRLPLLQGGKCSGYLLYCSIDPLLLPVEES 252 N+S A +L WPW + + + FR+PL++ +C+G++L+ + L +EES Sbjct: 181 NSSQVADTELTGSWPWPQQQKWMKSKQWQAFRIPLMKQSRCTGFVLFFNPQLFLSTIEES 240 Query: 253 LFIQGAELISYHLHSGYEDYFEHAGHREFSGLLRLCLNGGMPCAEMAQAASKLEVGLLQA 312 L++Q AEL+SY ++ YEDYFE + ++F L++ L G+P ++ + A + E+ + Q+ Sbjct: 241 LYLQAAELLSYQMNFNYEDYFELSVQKDFGVLIKRYLRNGLPIDKVVEYADRWELEVFQS 300 Query: 313 PFQLMLTDTV-ASGDARQTELHRLKEEYLEHPLLRDLNGIHVMMNEGLVSLYPA-EPYSP 370 + +L+D AS R +L +LK ++L H L++L G+H++M EGL+S++ + + Sbjct: 301 HYVCVLSDIAHASATQRAEKLEKLKSDFLSHTKLQELKGMHIVMEEGLLSVFSEHDGQAE 360 Query: 371 EQFRELVNACFGNLKFDKGYYPRAALSSAKVKPEGLKEAFAEIKECMGMFQHWGAHGNVV 430 + +N CF +++ + G PRAA+SS K + + L EAF E ++ + W ++ Sbjct: 361 DSLVSALNVCFASIQRESGESPRAAVSSRKKRADQLYEAFDECRQTQRLASEWRVGQSIT 420 Query: 431 HYRQLELNLLLGRIPAETMEKYCSSSLRGLQSREPDYVREMLHTLEVYLENDGHVNETAK 490 + ++L ++ + + ME +C+ L GL +++PDY EML TLE YLE DG +NETAK Sbjct: 421 SFDTMDLAIVFEHVSKDRMEAFCNRWLGGLVNKDPDYANEMLRTLETYLEQDGQLNETAK 480 Query: 491 KLFIHRNTATYRIEKLSELLDVDFKKINDLMRLKLVFIFRKMLERE 536 KL+IHRNTATYRIEKLSE+L VDFKK+NDL+RLK+ F+FRK+L E Sbjct: 481 KLYIHRNTATYRIEKLSEILGVDFKKMNDLLRLKIAFLFRKLLINE 526 >C1B5B8.1 C1B5B8_RHOOB Putative CdaR family transcriptional regulator Length = 564 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 135/556 (24%), Positives = 246/556 (44%), Gaps = 52/556 (9%) Query: 15 LTVEEALSVYPLSEAKLIAGSKGKHRVIKSVNVMDAPDISDWIKEGEMLLTTAYLIK--D 72 LT+ E L++ L+ +KLIAG+ G +++ VNVM+ PDI W+K E+L+TT + ++ D Sbjct: 14 LTIRELLTLPSLAGSKLIAGAGGLEQMVLRVNVMEVPDILPWVKPNELLITTGFPLRHAD 73 Query: 73 SLE--DASALLQ---TLNRRGSAGLGIKLGRFWDAVPEKLIAEAEKMNFPLIELPFQFTF 127 S E D AL++ L RRG A LG+K GR+ D +P +I +++++ PL +P F Sbjct: 74 SGEPFDTGALVELVEGLARRGVAALGVKEGRYLDDLPAAMIEASDRLDVPLFLIPRDIGF 133 Query: 128 SDQMNGLFRAELTRSTSVLQSIMEKQRKLMRFALRSGRSRPLFESVSEVIETPLAVVSAR 187 + M+ +F + R L R L + L G + + V+ + + + + + Sbjct: 134 DEVMSEVFTHLVDRQAFALDVADRMHRALTKIVLEGGDLPQIADEVAALFDAAVLICTPD 193 Query: 188 GDVVFNNSDNAVPQLLEGWPWQSRNQRFRI-----------GDKIG--FRLPLLQGGKCS 234 G V + LEG P + R R G + G P+L GG Sbjct: 194 GRVNATAGATVNLEALEGLPLVDPSGRLRTERLHPGLQSVPGTEAGQIAVAPVLAGGTDH 253 Query: 235 GYLLYCSIDPLLLPVEESLFIQGAELISYHLH-----SGYEDYFEHAGHREFSGLLRLCL 289 G ++ + D L PV + A +++ + S E F H +F LR L Sbjct: 254 GVIVAFAGDGGLGPVAVQALERAATVVALAVTKQLAVSAVESKF----HGDF---LRDVL 306 Query: 290 NGGM-PCAEMAQAASKLEVGLLQAPFQLM------LTDTVASGDARQTELHRLKEEYLEH 342 NG A++A+ ++LE + +A ++ L + A AR R+ ++ L Sbjct: 307 NGDAGTVAQIAEHCAQLEWDVNRAMVVVVAELDPDLARSTAGPAARPPVAGRMPQQRLTD 366 Query: 343 PL-----LRDLNGIHVMMNEGLVSLYPAEPYSPEQFRELVNACFGNLKFDKG---YYPRA 394 RD + V + +V L P R +++ + D+G + Sbjct: 367 AWKQVVRRRDRHAPVVGFSSEVVVLM---PVGGNDTRPVIDDLIAAVTGDRGGGRHSFCT 423 Query: 395 ALSSAKVKPEGLKEAFAEIKECMGMFQHWGAHGNVVHYRQLELNLLLGRIPAETMEKYCS 454 +S + +A+ + ++ + + + +G+V H+ L ++ LL + + + Sbjct: 424 GVSRVIDSATDIPQAYDQARKAVTVGRRMRGNGSVAHFDSLGVHRLLSLVDDSAELRAFA 483 Query: 455 SSLRGLQSREPDYVREMLHTLEVYLENDGHVNETAKKLFIHRNTATYRIEKLSELLDVDF 514 + + G + + D ++ T++ L+ + +V ETA+ L H NT YRI KL + V Sbjct: 484 TEILGSLAGDTDEAIDLRQTMQALLDTNCNVAETARILHFHYNTLRYRIGKLESI--VGP 541 Query: 515 KKINDLMRLKLVFIFR 530 + ++RL + R Sbjct: 542 FTTDPILRLDVALALR 557 >A8VR74.1 A8VR74_9BACI Transcriptional regulator, CdaR Length = 547 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 143/550 (26%), Positives = 232/550 (42%), Gaps = 32/550 (5%) Query: 13 MNLTVEEALSVYPLSEAKLIAGSKGKHRVIKSVNVMDAPDISDWIKEGEMLLTTAYLIKD 72 M +T+ + + KLIAG +G RVI++V M+ PDI +I EG LL+T Y I D Sbjct: 1 MEMTLADIQKLPAFEGVKLIAGHEGIDRVIRNVYFMEVPDIFGYIDEGGFLLSTLYPIAD 60 Query: 73 SLEDASALLQTLNRRGSAGLGIKLGRFWDAVPEKLIAEAEKMNFPLIELPFQFTFSDQMN 132 L+ L G AGL IK R+ VP+ +I +A ++ FPL L S N Sbjct: 61 DEAAIQRLIPGLVEVGMAGLAIKPARYITDVPDVMIEQANELGFPLFVLGQGANLSTLTN 120 Query: 133 GLFRAELTRSTSVLQSIMEKQRKLMRFALRSGRSRPLFESVSEVIETPLA--------VV 184 + L ++TS LQ + K+M + L +VSE+IE+P+ + Sbjct: 121 TILETLLDKNTSTLQFRNDLHNKMMEELVNGASLTELTMTVSEMIESPIILLDRELERIT 180 Query: 185 SARGDVVFNNSDNAVPQLLE---GWPWQSRNQ-RFRIGD------KIGFRLPLLQGGKCS 234 G V + ++ P +E P +Q R +G K F P+L G +C Sbjct: 181 DTTGKRVKVDRESVPPLPVERSFCLPNHVLDQVRLSVGSDGEIFLKDSFIQPVLAGEECF 240 Query: 235 GYLLYCSIDPLLLPVEESLFIQGAELISYHLHSGYEDYFEHAGHREFSGLLRLCLNGGMP 294 GY++ + D + P + Q + L++ + + +R LN M Sbjct: 241 GYMILPTTDRQIDPNAKMALEQTSLLMASVFQR--DKALKQKEENYLDAFIRDVLNEKMG 298 Query: 295 CAEMAQAASKLEVGLLQAPFQLM-----LTDTVASGDAR-QTELHRLKEEYLEHPLLRDL 348 +KL LQ P L L D V Q +R+ E++L L + Sbjct: 299 SQFEVIEKAKLFKWDLQFPVALFNMSVRLEDVVKKRRILIQYMENRVVEQFLSRKLDIHI 358 Query: 349 NGIHVMMNEGLVSLYPAEPYSPEQFRELVNACFGNLKFDKGYYPRAALSSAKVKP-EGL- 406 + I ++ + + + + L+ C + + + + P A LS EGL Sbjct: 359 SKIKLIYMDDSICAFINVAFESGIDERLIGVCEELVAYLESHDPDAPLSIGIADTVEGLG 418 Query: 407 --KEAFAEIKECMGMFQHWGAHGNVV-HYRQLELNLLLGRIPAETMEKYCSSSLRGLQSR 463 +A+ E + + G+ V HYR + L L+ +I + + + + Sbjct: 419 RFSKAYHEAIRTRELSEKIAEGGSFVRHYRDMVLYELIDQISEDVRADFIDKRIGAVLRY 478 Query: 464 EPDYVREMLHTLEVYLENDGHVNETAKKLFIHRNTATYRIEKLSELLDVDFKKINDLMRL 523 + E+L TLE ++++D + + A LFIH NT YR+EKL E L VD+ D M Sbjct: 479 DETKKMELLKTLEAFIDHDFNAQKAAASLFIHYNTFRYRLEKLKE-LGVDYDSGFDWMET 537 Query: 524 KLVFIFRKML 533 L +K+L Sbjct: 538 ALACRMQKLL 547 >C4EPK2.1 C4EPK2_STRRS Purine catabolism regulator-like protein Length = 326 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/233 (31%), Positives = 124/233 (53%), Gaps = 11/233 (4%) Query: 9 GGVAMNLTVEEALSVYPLSEAKLIAGSKGKHRVIKSVNVMDAPDISDWIKEGEMLLTTAY 68 G + + V E L V L+ A+LIAG +G R+++ +NVM+ PD+ W+K E+LLTT Y Sbjct: 11 GTIIHGVAVGEVLGVSTLAGARLIAGERGLGRIVQRLNVMEVPDVLAWVKPHELLLTTGY 70 Query: 69 LIKDSLEDASALLQTLNRRGSAGLGIKLGRFWDAVPEKLIAEAEKMNFPLIELPFQFTFS 128 ++++ + L+ L+ RG A L IKLGR+ D +PE+++ +A+++ FPLI+LP F Sbjct: 71 PLRNTPQSLDRLVADLDERGLAALAIKLGRYLDRLPEEMVEQADRLGFPLIQLPDDVGFD 130 Query: 129 DQMNGLFRAELTRSTSVLQSIMEKQRKLMRFALRSGRSRPLFESVSEVIETPLAVVSARG 188 D +N + L R +VL E R L++ L G R + V+ +++ +AV+ G Sbjct: 131 DILNQVLTDILNRQAAVLARAEEAHRALVQVVLAGGGLREVTAEVAGLLDVAVAVLDGAG 190 Query: 189 DVVFNNSDNAVPQLLEGWPWQSRNQRFRIGDKIGFRLPLLQGGKCSGYLLYCS 241 V+ L G P + R+ +P++ GG G ++ C Sbjct: 191 QVLAAAGPAEHLAALRGTP-EGRHT----------SVPVVAGGHHHGRIVACG 232 >A6TWU1.1 A6TWU1_ALKMQ Transcriptional regulator, CdaR Length = 551 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 65/170 (38%), Positives = 105/170 (61%), Gaps = 1/170 (0%) Query: 15 LTVEEALSVYPLSEAKLIAGSKGKHRVIKSVNVMDAPDISDWIKEGEMLLTTAY-LIKDS 73 +T++E L + + ++KLIAG KG + VNVM PDI +W+ EGE+LLTTAY KD Sbjct: 7 ITIDEVLKMECMEKSKLIAGFKGTGNAVTKVNVMADPDILNWVDEGELLLTTAYSFQKDD 66 Query: 74 LEDASALLQTLNRRGSAGLGIKLGRFWDAVPEKLIAEAEKMNFPLIELPFQFTFSDQMNG 133 E +L+Q + +G AG+GIK+ + + + E+++A A+K+N P+I+L + FSD M Sbjct: 67 KEAQKSLIQACSEKGLAGIGIKIYPYLECLSEEVLAIADKLNLPIIDLYYATPFSDIMTP 126 Query: 134 LFRAELTRSTSVLQSIMEKQRKLMRFALRSGRSRPLFESVSEVIETPLAV 183 +FR R TS+LQ + + +LM+ L G + + + V E + P+A+ Sbjct: 127 VFREIFNRQTSLLQRLEKIHERLMKVVLAGGEVKEIAQVVYENLRNPIAI 176 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,005,527,276 Number of extensions: 123899292 Number of successful extensions: 306642 Number of sequences better than 1.0e-05: 315 Number of HSP's gapped: 306703 Number of HSP's successfully gapped: 358 Length of query: 536 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 395 Effective length of database: 1,732,333,088 Effective search space: 684271569760 Effective search space used: 684271569760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 134 (56.2 bits)